Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50692 * 109.86558 * 2 1 4 4 H 1.08008 * 119.99843 * 126.54406 * 3 2 1 5 5 C 1.37879 * 120.00309 * 306.53651 * 3 2 1 6 6 N 1.31516 * 119.99426 * 354.84751 * 5 3 2 7 7 Si 1.86790 * 120.00328 * 174.84240 * 5 3 2 8 8 H 1.48506 * 109.47188 * 94.84177 * 7 5 3 9 9 H 1.48495 * 109.47396 * 214.84295 * 7 5 3 10 10 H 1.48506 * 109.47248 * 334.84326 * 7 5 3 11 11 C 1.53435 * 109.87177 * 120.99507 * 2 1 3 12 12 C 1.52632 * 109.39157 * 55.60361 * 11 2 1 13 13 C 1.50415 * 111.26244 * 54.62735 * 12 11 2 14 14 C 1.38302 * 119.13308 * 157.45312 * 13 12 11 15 15 C 1.38257 * 120.36270 * 179.51807 * 14 13 12 16 16 C 1.38430 * 120.48335 * 359.97073 * 15 14 13 17 17 C 1.37894 * 119.95471 * 0.13795 * 16 15 14 18 18 C 1.39581 * 121.60216 * 337.15499 * 13 12 11 19 19 C 1.47590 * 120.10836 * 0.85513 * 18 13 12 20 20 O 1.21245 * 121.17728 * 168.31830 * 19 18 13 21 21 H 1.09005 * 109.46968 * 299.00895 * 1 2 3 22 22 H 1.09004 * 109.47007 * 59.00745 * 1 2 3 23 23 H 1.08998 * 109.47596 * 179.00622 * 1 2 3 24 24 H 0.97006 * 119.99453 * 179.97438 * 6 5 3 25 25 H 1.09003 * 109.48243 * 295.62945 * 11 2 1 26 26 H 1.09000 * 109.48671 * 175.57951 * 11 2 1 27 27 H 1.08998 * 109.11773 * 294.16096 * 12 11 2 28 28 H 1.08999 * 109.06739 * 175.05209 * 12 11 2 29 29 H 1.08002 * 119.82225 * 359.49042 * 14 13 12 30 30 H 1.07989 * 119.75636 * 179.97438 * 15 14 13 31 31 H 1.08003 * 120.01951 * 180.14205 * 16 15 14 32 32 H 1.08008 * 120.11286 * 180.24962 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4172 0.0000 4 1 2.7494 1.7359 0.7515 5 6 1.6078 2.3072 -0.9594 6 7 0.8266 1.8945 -1.9335 7 14 2.1289 4.0990 -0.8754 8 1 3.3270 4.3066 -1.7280 9 1 1.0208 4.9601 -1.3609 10 1 2.4534 4.4549 0.5293 11 6 2.0516 -0.7431 1.2369 12 6 1.4589 -2.1492 1.2707 13 6 1.7308 -2.8867 -0.0118 14 6 1.7050 -4.2695 -0.0118 15 6 1.9414 -4.9728 -1.1784 16 6 2.2062 -4.3032 -2.3607 17 6 2.2382 -2.9248 -2.3790 18 6 2.0021 -2.2093 -1.2016 19 6 2.0464 -0.7342 -1.2202 20 8 2.4812 -0.1313 -2.1781 21 1 -0.3633 0.4984 0.8988 22 1 -0.3633 0.5292 -0.8810 23 1 -0.3634 -1.0275 -0.0178 24 1 0.5208 2.5207 -2.6083 25 1 1.7571 -0.2027 2.1367 26 1 3.1387 -0.8077 1.1908 27 1 0.3816 -2.0791 1.4209 28 1 1.8998 -2.7016 2.1005 29 1 1.4995 -4.8029 0.9045 30 1 1.9193 -6.0524 -1.1671 31 1 2.3876 -4.8602 -3.2681 32 1 2.4405 -2.3997 -3.3009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260737926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = -34.896291 kcal Electronic energy + Delta-G solvation = -16155.084201 eV Core-core repulsion = 13658.447462 eV Total energy + Delta-G solvation = -2496.636739 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24610 -38.79851 -37.03002 -34.55504 -32.29246 -31.57827 -29.37663 -27.40933 -26.20406 -23.98506 -22.73172 -22.12851 -19.31982 -18.22266 -17.54270 -16.64708 -16.36541 -16.02994 -15.42642 -15.14247 -14.94546 -14.70910 -14.13083 -14.10696 -13.41522 -13.14267 -13.01046 -12.86161 -12.64781 -12.46972 -12.25909 -12.13250 -12.05032 -11.69000 -11.09048 -10.91651 -10.48030 -9.77846 -9.70809 -9.50097 -8.02093 -6.16472 0.03393 0.49850 1.37920 1.40164 1.49374 2.00769 2.44749 3.00801 3.19492 3.74217 3.88487 4.03142 4.16565 4.38063 4.42443 4.54573 4.59160 4.74568 4.82628 4.98945 5.04459 5.11544 5.16207 5.23374 5.26074 5.45029 5.47456 5.57337 5.65120 5.68640 5.87153 6.10600 6.16655 6.34817 6.82558 7.37534 7.52054 8.99837 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.041850 B = 0.008999 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.903076 B = 3110.843978 C = 3489.613674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.021 3.979 3 C -0.538 4.538 4 H 0.053 0.947 5 C 0.031 3.969 6 N -0.888 5.888 7 Si 0.946 3.054 8 H -0.290 1.290 9 H -0.280 1.280 10 H -0.261 1.261 11 C -0.097 4.097 12 C -0.082 4.082 13 C -0.042 4.042 14 C -0.132 4.132 15 C -0.091 4.091 16 C -0.139 4.139 17 C -0.099 4.099 18 C -0.188 4.188 19 C 0.385 3.615 20 O -0.475 6.475 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.253 0.747 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -13.913 5.544 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.020 3.980 3 C -0.575 4.575 4 H 0.071 0.929 5 C -0.171 4.171 6 N -0.524 5.524 7 Si 0.772 3.228 8 H -0.217 1.217 9 H -0.206 1.206 10 H -0.185 1.185 11 C -0.135 4.135 12 C -0.118 4.118 13 C -0.042 4.042 14 C -0.150 4.150 15 C -0.109 4.109 16 C -0.157 4.157 17 C -0.117 4.117 18 C -0.189 4.189 19 C 0.262 3.738 20 O -0.350 6.350 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.125 0.875 29 H 0.180 0.820 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.187 -13.519 4.885 14.376 hybrid contribution 0.347 1.558 -0.702 1.744 sum 0.160 -11.961 4.183 12.672 Atomic orbital electron populations 1.21554 0.95232 0.98733 1.01966 1.18918 0.94590 0.93694 0.90758 1.21152 1.27011 0.95527 1.13839 0.92909 1.25594 0.94878 1.02115 0.94466 1.70028 1.34738 1.34941 1.12720 0.85749 0.77541 0.81048 0.78473 1.21681 1.20583 1.18536 1.21518 0.98896 0.95038 0.98044 1.20590 1.02555 0.94620 0.94079 1.20382 0.94922 0.94884 0.94018 1.21490 1.01086 0.92118 1.00302 1.21702 0.95913 1.01648 0.91587 1.21383 1.01522 0.92567 1.00237 1.21463 0.97525 0.95726 0.97003 1.21030 1.06230 0.95912 0.95747 1.24023 0.73218 0.87799 0.88764 1.90318 1.36113 1.72205 1.36339 0.93554 0.92609 0.94288 0.93749 0.90616 0.94047 0.89002 0.87547 0.82036 0.81830 0.83348 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 7.76 71.98 0.56 -5.00 16 2 C 0.02 1.06 0.49 -53.28 -0.03 1.04 16 3 C -0.54 -30.46 7.78 25.60 0.20 -30.26 16 4 H 0.05 2.94 7.76 -2.91 -0.02 2.92 16 5 C 0.03 1.81 4.72 84.65 0.40 2.21 16 6 N -0.89 -53.85 9.42 21.45 0.20 -53.65 16 7 Si 0.95 46.03 29.54 68.60 2.03 48.06 16 8 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 11 C -0.10 -3.79 4.75 30.62 0.15 -3.64 16 12 C -0.08 -2.44 5.11 29.64 0.15 -2.29 16 13 C -0.04 -1.37 5.58 -19.61 -0.11 -1.48 16 14 C -0.13 -3.19 9.65 22.29 0.22 -2.97 16 15 C -0.09 -2.01 10.03 22.32 0.22 -1.78 16 16 C -0.14 -3.81 10.04 22.23 0.22 -3.58 16 17 C -0.10 -3.75 9.60 22.56 0.22 -3.53 16 18 C -0.19 -7.90 5.78 -20.11 -0.12 -8.02 16 19 C 0.38 20.15 5.72 28.40 0.16 20.32 16 20 O -0.48 -29.04 14.58 -2.92 -0.04 -29.08 16 21 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 22 H 0.06 3.06 5.78 -2.38 -0.01 3.05 16 23 H 0.04 1.61 6.35 -2.39 -0.02 1.59 16 24 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 25 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 26 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 2.57 6.71 -2.39 -0.02 2.55 16 28 H 0.11 2.34 8.11 -2.39 -0.02 2.32 16 29 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.16 2.18 8.06 -2.92 -0.02 2.16 16 31 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.10 4.25 7.72 -2.91 -0.02 4.22 16 Total: -1.00 -71.80 261.22 5.54 -66.26 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.11 Total: 7.41 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 2.24 Total: -39.00 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.20 Total: -53.65 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.04 Total: -29.08 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.80 5.54 -66.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260737926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.361 kcal (2) G-P(sol) polarization free energy of solvation -71.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds