Wall clock time and date at job start Mon Mar 30 2020 03:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47409 * 2 1 4 4 H 1.09006 * 109.47383 * 304.79603 * 3 2 1 5 5 C 1.50693 * 109.47079 * 184.79863 * 3 2 1 6 6 H 1.08006 * 119.99694 * 239.99948 * 5 3 2 7 7 C 1.37874 * 120.00570 * 60.00095 * 5 3 2 8 8 N 1.31518 * 119.99482 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00337 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47230 * 89.99953 * 9 7 5 11 11 H 1.48501 * 109.47377 * 209.99810 * 9 7 5 12 12 H 1.48502 * 109.47492 * 330.00019 * 9 7 5 13 13 C 1.53000 * 109.46923 * 64.79725 * 3 2 1 14 14 C 1.52578 * 109.22940 * 65.60362 * 13 3 2 15 15 C 1.53086 * 109.95938 * 190.99716 * 14 13 3 16 16 S 1.81753 * 108.84120 * 296.97367 * 15 14 13 17 17 O 1.42103 * 109.46844 * 169.26100 * 16 15 14 18 18 C 1.81747 * 102.21834 * 53.26664 * 16 15 14 19 19 C 1.52585 * 109.22565 * 186.84161 * 13 3 2 20 20 H 1.08990 * 109.47214 * 173.88708 * 1 2 3 21 21 H 1.09002 * 109.46423 * 293.88391 * 1 2 3 22 22 H 1.08994 * 109.47111 * 53.87840 * 1 2 3 23 23 H 1.09002 * 109.46523 * 240.00028 * 2 1 3 24 24 H 1.08995 * 109.47355 * 120.00552 * 2 1 3 25 25 H 0.97004 * 119.99741 * 179.97438 * 8 7 5 26 26 H 1.09005 * 109.18848 * 306.21664 * 13 3 2 27 27 H 1.09001 * 109.39066 * 70.84203 * 14 13 3 28 28 H 1.09000 * 109.30671 * 311.09424 * 14 13 3 29 29 H 1.09002 * 109.57642 * 177.16425 * 15 14 13 30 30 H 1.09007 * 109.57773 * 56.77727 * 15 14 13 31 31 H 1.09001 * 109.58027 * 66.54031 * 18 16 15 32 32 H 1.09002 * 109.57021 * 186.93078 * 18 16 15 33 33 H 1.09001 * 109.38861 * 289.14926 * 19 13 3 34 34 H 1.08999 * 109.39183 * 48.95031 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6084 1.9806 -0.8439 5 6 3.5424 1.4440 -0.1189 6 1 4.1451 1.8895 0.6588 7 6 4.1475 0.8768 -1.2203 8 7 3.4135 0.3348 -2.1675 9 14 6.0096 0.8795 -1.3679 10 1 6.5574 -0.3513 -0.7430 11 1 6.3924 0.9189 -2.8021 12 1 6.5594 2.0728 -0.6758 13 6 1.6310 2.1280 1.3052 14 6 2.3492 1.4566 2.4720 15 6 1.7545 1.9376 3.7981 16 16 2.0393 3.7258 3.9548 17 8 1.2852 4.2315 5.0479 18 6 1.3512 4.3628 2.3979 19 6 1.9913 3.6088 1.2293 20 1 -0.3633 -1.0217 -0.1094 21 1 -0.3632 0.4161 0.9397 22 1 -0.3633 0.6058 -0.8301 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8391 -0.0639 -2.9426 26 1 0.5541 2.0272 1.4406 27 1 3.4091 1.7088 2.4380 28 1 2.2318 0.3758 2.3937 29 1 2.2374 1.4170 4.6251 30 1 0.6834 1.7357 3.8127 31 1 0.2723 4.2082 2.3851 32 1 1.5707 5.4268 2.3100 33 1 3.0746 3.7205 1.2765 34 1 1.6255 4.0226 0.2897 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260846073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:24 Heat of formation + Delta-G solvation = -64.984840 kcal Electronic energy + Delta-G solvation = -14999.731742 eV Core-core repulsion = 12637.234217 eV Total energy + Delta-G solvation = -2362.497525 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.74576 -35.35388 -33.45472 -31.54572 -30.93836 -28.18753 -25.21254 -22.96589 -22.66368 -20.59292 -18.70019 -17.26959 -16.04391 -15.37427 -14.70825 -14.63436 -14.00523 -13.85986 -13.50545 -13.17601 -12.76923 -12.32555 -12.02941 -11.87271 -11.39325 -11.19829 -10.96462 -10.92318 -10.71141 -10.65377 -10.35560 -10.20790 -9.72542 -9.59861 -9.08913 -8.94913 -8.61510 -8.28190 -7.92258 -5.97493 -4.03765 1.90347 2.85964 3.29988 3.38183 3.39144 4.09406 4.43496 5.20970 5.26279 5.33822 5.45194 5.51827 5.77514 5.87358 6.01385 6.19498 6.21675 6.31575 6.38116 6.53515 6.62165 6.63288 6.85546 6.98261 7.02784 7.08634 7.26340 7.47930 7.75574 7.98943 8.15185 8.46666 8.99914 9.60952 11.07770 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029564 B = 0.008823 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.863256 B = 3172.639424 C = 3675.188707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.057 3.943 4 H 0.026 0.974 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.885 3.115 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.273 1.273 13 C -0.093 4.093 14 C -0.084 4.084 15 C -0.429 4.429 16 S 1.214 4.786 17 O -0.879 6.879 18 C -0.429 4.429 19 C -0.082 4.082 20 H 0.030 0.970 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.258 0.742 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 3.374 6.386 7.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.039 3.961 4 H 0.044 0.956 5 C -0.545 4.545 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.198 1.198 13 C -0.112 4.112 14 C -0.122 4.122 15 C -0.568 4.568 16 S 1.414 4.586 17 O -0.875 6.875 18 C -0.568 4.568 19 C -0.120 4.120 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.111 0.889 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.647 3.812 6.993 7.990 hybrid contribution -1.371 -0.630 -0.437 1.571 sum -0.724 3.182 6.556 7.323 Atomic orbital electron populations 1.21883 0.99892 0.99118 0.99660 1.21692 0.91114 1.00817 1.02342 1.18701 0.95655 0.91515 0.90268 0.95562 1.21249 0.91340 1.36917 1.04998 0.91996 1.24983 0.97622 0.95556 0.95948 1.69883 1.34666 1.38839 1.09560 0.86709 0.86424 0.78405 0.77132 1.20888 1.21567 1.19753 1.21278 0.97800 0.93909 0.98197 1.21242 1.00468 1.01557 0.88905 1.27602 1.06074 1.17982 1.05111 1.70196 1.18307 0.86997 0.83065 1.93019 1.75844 1.74513 1.44091 1.27587 1.07544 1.07302 1.14330 1.21162 1.01207 0.94602 0.95079 0.95046 0.94736 0.93863 0.88932 0.94586 0.93171 0.93701 0.89853 0.90725 0.87772 0.90455 0.90420 0.87762 0.89881 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.51 37.16 0.35 -2.49 16 2 C -0.12 -2.68 5.12 -26.73 -0.14 -2.82 16 3 C 0.06 1.26 1.52 -91.78 -0.14 1.12 16 4 H 0.03 0.65 8.05 -51.93 -0.42 0.24 16 5 C -0.51 -12.07 7.33 -34.44 -0.25 -12.32 16 6 H 0.06 1.38 5.85 -52.48 -0.31 1.08 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -24.00 11.30 55.43 0.63 -23.38 16 9 Si 0.88 19.72 29.54 -169.99 -5.02 14.70 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C -0.09 -1.67 1.57 -91.05 -0.14 -1.82 16 14 C -0.08 -1.35 4.42 -26.90 -0.12 -1.47 16 15 C -0.43 -6.12 6.44 37.20 0.24 -5.88 16 16 S 1.21 16.59 13.75 -107.50 -1.48 15.11 16 17 O -0.88 -17.09 18.14 -35.23 -0.64 -17.73 16 18 C -0.43 -6.05 6.44 37.21 0.24 -5.81 16 19 C -0.08 -1.31 4.71 -26.89 -0.13 -1.43 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.03 0.61 6.73 -51.93 -0.35 0.26 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.09 2.34 5.96 -51.93 -0.31 2.03 16 24 H 0.04 0.76 6.16 -51.93 -0.32 0.44 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.04 0.81 6.33 -51.93 -0.33 0.48 16 27 H 0.08 1.28 6.62 -51.93 -0.34 0.93 16 28 H 0.07 1.29 6.03 -51.93 -0.31 0.98 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.25 7.30 -51.93 -0.38 0.87 16 34 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 LS Contribution 270.61 15.07 4.08 4.08 Total: -1.00 -30.32 270.61 -7.77 -38.09 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.16 Total: 0.63 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: -0.18 Total: -31.50 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.63 Total: -23.38 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.64 Total: -17.73 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 16.59 SS G_CDS: -1.48 Total: 15.11 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.32 -7.77 -38.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260846073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.897 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds