Wall clock time and date at job start Mon Mar 30 2020 03:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52996 * 109.47409 * 2 1
4 4 H 1.09006 * 109.47383 * 304.79603 * 3 2 1
5 5 C 1.50693 * 109.47079 * 184.79863 * 3 2 1
6 6 H 1.08006 * 119.99694 * 239.99948 * 5 3 2
7 7 C 1.37874 * 120.00570 * 60.00095 * 5 3 2
8 8 N 1.31518 * 119.99482 * 0.02562 * 7 5 3
9 9 Si 1.86793 * 120.00337 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.47230 * 89.99953 * 9 7 5
11 11 H 1.48501 * 109.47377 * 209.99810 * 9 7 5
12 12 H 1.48502 * 109.47492 * 330.00019 * 9 7 5
13 13 C 1.53000 * 109.46923 * 64.79725 * 3 2 1
14 14 C 1.52578 * 109.22940 * 65.60362 * 13 3 2
15 15 C 1.53086 * 109.95938 * 190.99716 * 14 13 3
16 16 S 1.81753 * 108.84120 * 296.97367 * 15 14 13
17 17 O 1.42103 * 109.46844 * 169.26100 * 16 15 14
18 18 C 1.81747 * 102.21834 * 53.26664 * 16 15 14
19 19 C 1.52585 * 109.22565 * 186.84161 * 13 3 2
20 20 H 1.08990 * 109.47214 * 173.88708 * 1 2 3
21 21 H 1.09002 * 109.46423 * 293.88391 * 1 2 3
22 22 H 1.08994 * 109.47111 * 53.87840 * 1 2 3
23 23 H 1.09002 * 109.46523 * 240.00028 * 2 1 3
24 24 H 1.08995 * 109.47355 * 120.00552 * 2 1 3
25 25 H 0.97004 * 119.99741 * 179.97438 * 8 7 5
26 26 H 1.09005 * 109.18848 * 306.21664 * 13 3 2
27 27 H 1.09001 * 109.39066 * 70.84203 * 14 13 3
28 28 H 1.09000 * 109.30671 * 311.09424 * 14 13 3
29 29 H 1.09002 * 109.57642 * 177.16425 * 15 14 13
30 30 H 1.09007 * 109.57773 * 56.77727 * 15 14 13
31 31 H 1.09001 * 109.58027 * 66.54031 * 18 16 15
32 32 H 1.09002 * 109.57021 * 186.93078 * 18 16 15
33 33 H 1.09001 * 109.38861 * 289.14926 * 19 13 3
34 34 H 1.08999 * 109.39183 * 48.95031 * 19 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6084 1.9806 -0.8439
5 6 3.5424 1.4440 -0.1189
6 1 4.1451 1.8895 0.6588
7 6 4.1475 0.8768 -1.2203
8 7 3.4135 0.3348 -2.1675
9 14 6.0096 0.8795 -1.3679
10 1 6.5574 -0.3513 -0.7430
11 1 6.3924 0.9189 -2.8021
12 1 6.5594 2.0728 -0.6758
13 6 1.6310 2.1280 1.3052
14 6 2.3492 1.4566 2.4720
15 6 1.7545 1.9376 3.7981
16 16 2.0393 3.7258 3.9548
17 8 1.2852 4.2315 5.0479
18 6 1.3512 4.3628 2.3979
19 6 1.9913 3.6088 1.2293
20 1 -0.3633 -1.0217 -0.1094
21 1 -0.3632 0.4161 0.9397
22 1 -0.3633 0.6058 -0.8301
23 1 1.8933 -0.5139 -0.8900
24 1 1.8934 -0.5139 0.8899
25 1 3.8391 -0.0639 -2.9426
26 1 0.5541 2.0272 1.4406
27 1 3.4091 1.7088 2.4380
28 1 2.2318 0.3758 2.3937
29 1 2.2374 1.4170 4.6251
30 1 0.6834 1.7357 3.8127
31 1 0.2723 4.2082 2.3851
32 1 1.5707 5.4268 2.3100
33 1 3.0746 3.7205 1.2765
34 1 1.6255 4.0226 0.2897
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260846073.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:55:24
Heat of formation + Delta-G solvation = -64.984840 kcal
Electronic energy + Delta-G solvation = -14999.731742 eV
Core-core repulsion = 12637.234217 eV
Total energy + Delta-G solvation = -2362.497525 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-37.74576 -35.35388 -33.45472 -31.54572 -30.93836 -28.18753 -25.21254 -22.96589
-22.66368 -20.59292 -18.70019 -17.26959 -16.04391 -15.37427 -14.70825 -14.63436
-14.00523 -13.85986 -13.50545 -13.17601 -12.76923 -12.32555 -12.02941 -11.87271
-11.39325 -11.19829 -10.96462 -10.92318 -10.71141 -10.65377 -10.35560 -10.20790
-9.72542 -9.59861 -9.08913 -8.94913 -8.61510 -8.28190 -7.92258 -5.97493
-4.03765 1.90347 2.85964 3.29988 3.38183 3.39144 4.09406 4.43496
5.20970 5.26279 5.33822 5.45194 5.51827 5.77514 5.87358 6.01385
6.19498 6.21675 6.31575 6.38116 6.53515 6.62165 6.63288 6.85546
6.98261 7.02784 7.08634 7.26340 7.47930 7.75574 7.98943 8.15185
8.46666 8.99914 9.60952 11.07770
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.029564 B = 0.008823 C = 0.007617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 946.863256 B = 3172.639424 C = 3675.188707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.122 4.122
3 C 0.057 3.943
4 H 0.026 0.974
5 C -0.507 4.507
6 H 0.062 0.938
7 C 0.060 3.940
8 N -0.890 5.890
9 Si 0.885 3.115
10 H -0.283 1.283
11 H -0.290 1.290
12 H -0.273 1.273
13 C -0.093 4.093
14 C -0.084 4.084
15 C -0.429 4.429
16 S 1.214 4.786
17 O -0.879 6.879
18 C -0.429 4.429
19 C -0.082 4.082
20 H 0.030 0.970
21 H 0.034 0.966
22 H 0.042 0.958
23 H 0.092 0.908
24 H 0.035 0.965
25 H 0.258 0.742
26 H 0.045 0.955
27 H 0.083 0.917
28 H 0.074 0.926
29 H 0.104 0.896
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.104 0.896
33 H 0.083 0.917
34 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.227 3.374 6.386 7.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.160 4.160
3 C 0.039 3.961
4 H 0.044 0.956
5 C -0.545 4.545
6 H 0.080 0.920
7 C -0.141 4.141
8 N -0.529 5.529
9 Si 0.713 3.287
10 H -0.209 1.209
11 H -0.216 1.216
12 H -0.198 1.198
13 C -0.112 4.112
14 C -0.122 4.122
15 C -0.568 4.568
16 S 1.414 4.586
17 O -0.875 6.875
18 C -0.568 4.568
19 C -0.120 4.120
20 H 0.050 0.950
21 H 0.053 0.947
22 H 0.061 0.939
23 H 0.111 0.889
24 H 0.054 0.946
25 H 0.068 0.932
26 H 0.063 0.937
27 H 0.101 0.899
28 H 0.093 0.907
29 H 0.122 0.878
30 H 0.095 0.905
31 H 0.096 0.904
32 H 0.122 0.878
33 H 0.101 0.899
34 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 0.647 3.812 6.993 7.990
hybrid contribution -1.371 -0.630 -0.437 1.571
sum -0.724 3.182 6.556 7.323
Atomic orbital electron populations
1.21883 0.99892 0.99118 0.99660 1.21692 0.91114 1.00817 1.02342
1.18701 0.95655 0.91515 0.90268 0.95562 1.21249 0.91340 1.36917
1.04998 0.91996 1.24983 0.97622 0.95556 0.95948 1.69883 1.34666
1.38839 1.09560 0.86709 0.86424 0.78405 0.77132 1.20888 1.21567
1.19753 1.21278 0.97800 0.93909 0.98197 1.21242 1.00468 1.01557
0.88905 1.27602 1.06074 1.17982 1.05111 1.70196 1.18307 0.86997
0.83065 1.93019 1.75844 1.74513 1.44091 1.27587 1.07544 1.07302
1.14330 1.21162 1.01207 0.94602 0.95079 0.95046 0.94736 0.93863
0.88932 0.94586 0.93171 0.93701 0.89853 0.90725 0.87772 0.90455
0.90420 0.87762 0.89881 0.91474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.84 9.51 37.16 0.35 -2.49 16
2 C -0.12 -2.68 5.12 -26.73 -0.14 -2.82 16
3 C 0.06 1.26 1.52 -91.78 -0.14 1.12 16
4 H 0.03 0.65 8.05 -51.93 -0.42 0.24 16
5 C -0.51 -12.07 7.33 -34.44 -0.25 -12.32 16
6 H 0.06 1.38 5.85 -52.48 -0.31 1.08 16
7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16
8 N -0.89 -24.00 11.30 55.43 0.63 -23.38 16
9 Si 0.88 19.72 29.54 -169.99 -5.02 14.70 16
10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16
11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16
13 C -0.09 -1.67 1.57 -91.05 -0.14 -1.82 16
14 C -0.08 -1.35 4.42 -26.90 -0.12 -1.47 16
15 C -0.43 -6.12 6.44 37.20 0.24 -5.88 16
16 S 1.21 16.59 13.75 -107.50 -1.48 15.11 16
17 O -0.88 -17.09 18.14 -35.23 -0.64 -17.73 16
18 C -0.43 -6.05 6.44 37.21 0.24 -5.81 16
19 C -0.08 -1.31 4.71 -26.89 -0.13 -1.43 16
20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
21 H 0.03 0.61 6.73 -51.93 -0.35 0.26 16
22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
23 H 0.09 2.34 5.96 -51.93 -0.31 2.03 16
24 H 0.04 0.76 6.16 -51.93 -0.32 0.44 16
25 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16
26 H 0.04 0.81 6.33 -51.93 -0.33 0.48 16
27 H 0.08 1.28 6.62 -51.93 -0.34 0.93 16
28 H 0.07 1.29 6.03 -51.93 -0.31 0.98 16
29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16
30 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16
31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16
33 H 0.08 1.25 7.30 -51.93 -0.38 0.87 16
34 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16
LS Contribution 270.61 15.07 4.08 4.08
Total: -1.00 -30.32 270.61 -7.77 -38.09
By element:
Atomic # 1 Polarization: 5.79 SS G_CDS: -5.16 Total: 0.63 kcal
Atomic # 6 Polarization: -31.32 SS G_CDS: -0.18 Total: -31.50 kcal
Atomic # 7 Polarization: -24.00 SS G_CDS: 0.63 Total: -23.38 kcal
Atomic # 8 Polarization: -17.09 SS G_CDS: -0.64 Total: -17.73 kcal
Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal
Atomic # 16 Polarization: 16.59 SS G_CDS: -1.48 Total: 15.11 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -30.32 -7.77 -38.09 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260846073.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.897 kcal
(2) G-P(sol) polarization free energy of solvation -30.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds