Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47254 * 300.00348 * 3 2 1 6 6 H 1.48498 * 109.47367 * 60.00100 * 3 2 1 7 7 C 1.37877 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00348 * 186.25188 * 7 2 1 9 9 C 1.50707 * 120.00191 * 5.97838 * 7 2 1 10 10 H 1.09003 * 109.53839 * 355.66429 * 9 7 2 11 11 C 1.51002 * 109.54484 * 115.83772 * 9 7 2 12 12 C 1.38374 * 118.41203 * 287.17926 * 11 9 7 13 13 C 1.38067 * 120.45410 * 179.54209 * 12 11 9 14 14 C 1.38293 * 119.84133 * 359.93414 * 13 12 11 15 15 C 1.37857 * 119.97485 * 0.17588 * 14 13 12 16 16 C 1.38440 * 121.60596 * 106.91164 * 11 9 7 17 17 O 1.35738 * 123.02254 * 0.82637 * 16 11 9 18 18 C 1.42833 * 118.81156 * 340.96459 * 17 16 11 19 19 C 1.52948 * 109.54427 * 235.48862 * 9 7 2 20 20 C 1.52540 * 118.35135 * 136.26330 * 19 9 7 21 21 C 1.52608 * 118.19068 * 66.81135 * 19 9 7 22 22 H 0.97002 * 120.00478 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.74770 * 359.53506 * 12 11 9 24 24 H 1.07995 * 120.07702 * 179.97438 * 13 12 11 25 25 H 1.08001 * 120.01444 * 180.20120 * 14 13 12 26 26 H 1.08006 * 119.79189 * 179.97438 * 15 14 13 27 27 H 1.08995 * 109.78448 * 286.37295 * 18 17 16 28 28 H 1.08995 * 109.78635 * 165.54292 * 18 17 16 29 29 H 1.08997 * 117.50914 * 359.41980 * 20 19 9 30 30 H 1.09003 * 117.50810 * 144.49206 * 20 19 9 31 31 H 1.08997 * 117.51395 * 215.75448 * 21 19 9 32 32 H 1.08997 * 117.51191 * 0.82020 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1969 0.1013 9 6 1.2572 -2.4956 -0.1370 10 1 0.1847 -2.3010 -0.1460 11 6 1.6578 -3.1756 -1.4244 12 6 1.1974 -2.6488 -2.6182 13 6 1.5455 -3.2312 -3.8206 14 6 2.3610 -4.3480 -3.8337 15 6 2.8210 -4.8789 -2.6475 16 6 2.4701 -4.2966 -1.4305 17 8 2.9472 -4.8706 -0.2968 18 6 2.9617 -4.1050 0.9089 19 6 1.6016 -3.4093 1.0402 20 6 0.4689 -4.1695 1.7227 21 6 1.1419 -2.9929 2.4345 22 1 -0.4851 0.8400 0.0004 23 1 0.5613 -1.7761 -2.6089 24 1 1.1823 -2.8153 -4.7488 25 1 2.6377 -4.8040 -4.7728 26 1 3.4575 -5.7514 -2.6611 27 1 3.7548 -3.3587 0.8626 28 1 3.1231 -4.7635 1.7623 29 1 -0.5410 -4.0166 1.3422 30 1 0.6859 -5.1719 2.0916 31 1 1.8017 -3.2215 3.2714 32 1 0.5753 -2.0659 2.5219 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260885506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = 5.214075 kcal Electronic energy + Delta-G solvation = -16113.332417 eV Core-core repulsion = 13618.434994 eV Total energy + Delta-G solvation = -2494.897423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88501 -37.10576 -35.99064 -33.08651 -30.95098 -29.52429 -27.56671 -25.94296 -23.45351 -21.88801 -21.54729 -20.96152 -17.99110 -17.00152 -16.32464 -15.66119 -15.24551 -14.73195 -14.31458 -13.86982 -13.24954 -12.95170 -12.69951 -12.51898 -12.08078 -11.85537 -11.32412 -11.04773 -10.89117 -10.76297 -10.49584 -10.38976 -10.21999 -9.94167 -9.36564 -9.09480 -8.74267 -8.56988 -7.85723 -7.29567 -6.14583 -4.17981 2.21640 2.24940 3.22240 3.31274 3.35922 3.98152 4.30952 4.65725 4.74994 5.14862 5.36021 5.56000 5.65980 5.69608 5.78123 5.83082 5.97073 6.17104 6.20236 6.31069 6.31103 6.39793 6.61397 6.67827 6.87249 6.95383 7.04025 7.16978 7.31380 7.56015 7.64196 7.70613 7.77511 8.16874 8.32575 8.90166 9.44364 10.91744 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.012482 C = 0.009198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.865972 B = 2242.660340 C = 3043.406991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.070 3.930 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.496 4.496 8 H 0.054 0.946 9 C 0.098 3.902 10 H 0.089 0.911 11 C -0.100 4.100 12 C -0.076 4.076 13 C -0.162 4.162 14 C -0.118 4.118 15 C -0.161 4.161 16 C 0.112 3.888 17 O -0.327 6.327 18 C 0.105 3.895 19 C -0.143 4.143 20 C -0.183 4.183 21 C -0.151 4.151 22 H 0.263 0.737 23 H 0.124 0.876 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -6.159 -1.013 6.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.080 3.920 10 H 0.107 0.893 11 C -0.101 4.101 12 C -0.094 4.094 13 C -0.180 4.180 14 C -0.136 4.136 15 C -0.180 4.180 16 C 0.068 3.932 17 O -0.241 6.241 18 C 0.031 3.969 19 C -0.144 4.144 20 C -0.221 4.221 21 C -0.188 4.188 22 H 0.073 0.927 23 H 0.142 0.858 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.359 -6.211 -0.980 6.716 hybrid contribution 0.426 1.209 0.080 1.284 sum 2.786 -5.002 -0.900 5.796 Atomic orbital electron populations 1.69883 1.05884 1.26886 1.50146 1.24935 0.94856 0.99193 0.94255 0.86550 0.80349 0.83566 0.77704 1.19644 1.20809 1.20948 1.20873 0.93273 0.89357 1.49861 0.92747 1.17680 1.00181 0.90646 0.83497 0.89347 1.20745 0.96535 0.93941 0.98862 1.20917 0.98781 0.98718 0.91028 1.20928 1.01586 0.97844 0.97677 1.20587 0.99367 0.97182 0.96485 1.20454 1.04523 1.02614 0.90372 1.18766 0.95147 0.93907 0.85398 1.85711 1.79926 1.42025 1.16456 1.22360 0.96392 0.93952 0.84243 1.22220 0.93803 1.00957 0.97385 1.22942 0.97945 0.95539 1.05627 1.22640 1.03158 0.98931 0.94057 0.92665 0.85827 0.87156 0.86906 0.86772 0.91695 0.89387 0.89302 0.90240 0.90340 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.19 12.62 55.43 0.70 -23.49 16 2 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -12.94 7.95 -34.44 -0.27 -13.22 16 8 H 0.05 1.46 7.78 -52.49 -0.41 1.05 16 9 C 0.10 2.38 2.25 -92.80 -0.21 2.17 16 10 H 0.09 2.37 6.81 -51.93 -0.35 2.02 16 11 C -0.10 -2.29 5.11 -104.35 -0.53 -2.82 16 12 C -0.08 -1.67 9.49 -39.59 -0.38 -2.04 16 13 C -0.16 -3.02 10.05 -39.62 -0.40 -3.42 16 14 C -0.12 -2.06 10.03 -39.70 -0.40 -2.46 16 15 C -0.16 -3.04 9.90 -39.29 -0.39 -3.43 16 16 C 0.11 2.42 6.47 -39.07 -0.25 2.16 16 17 O -0.33 -6.75 10.19 -18.92 -0.19 -6.94 16 18 C 0.11 2.03 6.77 37.33 0.25 2.28 16 19 C -0.14 -3.00 1.48 -154.80 -0.23 -3.23 16 20 C -0.18 -3.44 9.95 -26.92 -0.27 -3.71 16 21 C -0.15 -2.92 9.84 -26.88 -0.26 -3.18 16 22 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 23 H 0.12 2.83 8.06 -52.49 -0.42 2.41 16 24 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 27 H 0.06 1.29 8.10 -51.93 -0.42 0.86 16 28 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 29 H 0.09 1.71 8.13 -51.93 -0.42 1.29 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 272.35 15.07 4.10 4.10 Total: -1.00 -27.38 272.35 -7.97 -35.35 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.12 Total: 4.49 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -3.44 Total: -29.15 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.70 Total: -23.49 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.19 Total: -6.94 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.38 -7.97 -35.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.563 kcal (2) G-P(sol) polarization free energy of solvation -27.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds