Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47254 * 300.00348 * 3 2 1 6 6 H 1.48498 * 109.47367 * 60.00100 * 3 2 1 7 7 C 1.37877 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00348 * 186.25188 * 7 2 1 9 9 C 1.50707 * 120.00191 * 5.97838 * 7 2 1 10 10 H 1.09003 * 109.53839 * 355.66429 * 9 7 2 11 11 C 1.51002 * 109.54484 * 115.83772 * 9 7 2 12 12 C 1.38374 * 118.41203 * 287.17926 * 11 9 7 13 13 C 1.38067 * 120.45410 * 179.54209 * 12 11 9 14 14 C 1.38293 * 119.84133 * 359.93414 * 13 12 11 15 15 C 1.37857 * 119.97485 * 0.17588 * 14 13 12 16 16 C 1.38440 * 121.60596 * 106.91164 * 11 9 7 17 17 O 1.35738 * 123.02254 * 0.82637 * 16 11 9 18 18 C 1.42833 * 118.81156 * 340.96459 * 17 16 11 19 19 C 1.52948 * 109.54427 * 235.48862 * 9 7 2 20 20 C 1.52540 * 118.35135 * 136.26330 * 19 9 7 21 21 C 1.52608 * 118.19068 * 66.81135 * 19 9 7 22 22 H 0.97002 * 120.00478 * 359.97438 * 1 2 3 23 23 H 1.07994 * 119.74770 * 359.53506 * 12 11 9 24 24 H 1.07995 * 120.07702 * 179.97438 * 13 12 11 25 25 H 1.08001 * 120.01444 * 180.20120 * 14 13 12 26 26 H 1.08006 * 119.79189 * 179.97438 * 15 14 13 27 27 H 1.08995 * 109.78448 * 286.37295 * 18 17 16 28 28 H 1.08995 * 109.78635 * 165.54292 * 18 17 16 29 29 H 1.08997 * 117.50914 * 359.41980 * 20 19 9 30 30 H 1.09003 * 117.50810 * 144.49206 * 20 19 9 31 31 H 1.08997 * 117.51395 * 215.75448 * 21 19 9 32 32 H 1.08997 * 117.51191 * 0.82020 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0797 -1.1969 0.1013 9 6 1.2572 -2.4956 -0.1370 10 1 0.1847 -2.3010 -0.1460 11 6 1.6578 -3.1756 -1.4244 12 6 1.1974 -2.6488 -2.6182 13 6 1.5455 -3.2312 -3.8206 14 6 2.3610 -4.3480 -3.8337 15 6 2.8210 -4.8789 -2.6475 16 6 2.4701 -4.2966 -1.4305 17 8 2.9472 -4.8706 -0.2968 18 6 2.9617 -4.1050 0.9089 19 6 1.6016 -3.4093 1.0402 20 6 0.4689 -4.1695 1.7227 21 6 1.1419 -2.9929 2.4345 22 1 -0.4851 0.8400 0.0004 23 1 0.5613 -1.7761 -2.6089 24 1 1.1823 -2.8153 -4.7488 25 1 2.6377 -4.8040 -4.7728 26 1 3.4575 -5.7514 -2.6611 27 1 3.7548 -3.3587 0.8626 28 1 3.1231 -4.7635 1.7623 29 1 -0.5410 -4.0166 1.3422 30 1 0.6859 -5.1719 2.0916 31 1 1.8017 -3.2215 3.2714 32 1 0.5753 -2.0659 2.5219 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260885506.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = -8.711884 kcal Electronic energy + Delta-G solvation = -16113.936291 eV Core-core repulsion = 13618.434994 eV Total energy + Delta-G solvation = -2495.501298 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46905 -38.64690 -37.58807 -34.98312 -32.67809 -31.07222 -29.23383 -27.65358 -25.27164 -23.44125 -23.13350 -22.54129 -19.66054 -18.59202 -18.23489 -17.25839 -16.79035 -16.57780 -15.85463 -15.45707 -14.91446 -14.50317 -14.40622 -14.27239 -13.70074 -13.40701 -13.03892 -12.90452 -12.63893 -12.30321 -12.14250 -12.00665 -11.91694 -11.71444 -11.09002 -10.82818 -10.56778 -10.33840 -9.47401 -8.89458 -8.14427 -6.24485 0.64451 0.70164 1.35127 1.38590 1.48747 2.37457 2.47329 3.03891 3.09162 3.26067 3.81037 3.98680 4.15060 4.22448 4.29425 4.33606 4.52137 4.65791 4.66665 4.74573 4.81378 4.85704 5.07665 5.12877 5.32490 5.33614 5.42491 5.57085 5.63572 5.71116 5.77536 6.04668 6.11497 6.23539 6.69106 6.88467 7.39449 8.90357 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.012482 C = 0.009198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.865972 B = 2242.660340 C = 3043.406991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.026 3.974 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.501 4.501 8 H 0.042 0.958 9 C 0.099 3.901 10 H 0.047 0.953 11 C -0.132 4.132 12 C -0.101 4.101 13 C -0.158 4.158 14 C -0.103 4.103 15 C -0.160 4.160 16 C 0.095 3.905 17 O -0.327 6.327 18 C 0.109 3.891 19 C -0.166 4.166 20 C -0.166 4.166 21 C -0.146 4.146 22 H 0.263 0.737 23 H 0.095 0.905 24 H 0.139 0.861 25 H 0.160 0.840 26 H 0.143 0.857 27 H 0.053 0.947 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.028 -7.887 -1.685 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.173 4.173 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.080 3.920 10 H 0.065 0.935 11 C -0.133 4.133 12 C -0.120 4.120 13 C -0.176 4.176 14 C -0.120 4.120 15 C -0.178 4.178 16 C 0.050 3.950 17 O -0.242 6.242 18 C 0.034 3.966 19 C -0.167 4.167 20 C -0.203 4.203 21 C -0.183 4.183 22 H 0.072 0.928 23 H 0.113 0.887 24 H 0.157 0.843 25 H 0.177 0.823 26 H 0.161 0.839 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.951 -7.942 -1.650 9.022 hybrid contribution -0.080 1.690 0.211 1.705 sum 3.871 -6.252 -1.439 7.492 Atomic orbital electron populations 1.70006 1.07058 1.27326 1.51572 1.25568 0.95497 1.01929 0.94342 0.85693 0.79173 0.80244 0.77726 1.19444 1.20651 1.20398 1.21027 0.92670 0.90831 1.49315 0.93961 1.17444 0.97378 0.91071 0.86074 0.93528 1.20694 0.98582 0.95606 0.98399 1.20885 0.99725 0.98797 0.92579 1.21250 1.01075 0.97954 0.97334 1.21099 0.97167 0.95826 0.97952 1.20890 1.04168 1.03057 0.89680 1.19028 0.95395 0.93801 0.86767 1.85700 1.79813 1.42064 1.16599 1.22475 0.94596 0.94423 0.85058 1.22174 0.95812 1.01919 0.96781 1.22957 0.96465 0.96774 1.04117 1.22608 1.03306 0.97984 0.94441 0.92790 0.88668 0.84296 0.82253 0.83889 0.92880 0.85462 0.90852 0.86942 0.86992 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.59 12.62 21.45 0.27 -52.32 16 2 C 0.03 1.40 5.45 84.65 0.46 1.86 16 3 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.50 -27.17 7.95 25.60 0.20 -26.97 16 8 H 0.04 2.34 7.78 -2.91 -0.02 2.31 16 9 C 0.10 4.99 2.25 -12.21 -0.03 4.96 16 10 H 0.05 2.69 6.81 -2.39 -0.02 2.67 16 11 C -0.13 -6.18 5.11 -19.69 -0.10 -6.28 16 12 C -0.10 -4.55 9.49 22.26 0.21 -4.34 16 13 C -0.16 -5.60 10.05 22.24 0.22 -5.38 16 14 C -0.10 -3.18 10.03 22.19 0.22 -2.96 16 15 C -0.16 -5.51 9.90 22.46 0.22 -5.29 16 16 C 0.09 3.97 6.47 22.60 0.15 4.11 16 17 O -0.33 -12.91 10.19 -90.62 -0.92 -13.83 16 18 C 0.11 4.03 6.77 72.09 0.49 4.52 16 19 C -0.17 -7.00 1.48 -52.37 -0.08 -7.08 16 20 C -0.17 -6.12 9.95 30.47 0.30 -5.82 16 21 C -0.15 -5.64 9.84 30.50 0.30 -5.34 16 22 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 23 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 24 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 25 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 26 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 27 H 0.05 2.06 8.10 -2.39 -0.02 2.05 16 28 H 0.13 3.66 8.13 -2.39 -0.02 3.64 16 29 H 0.07 2.90 8.13 -2.39 -0.02 2.88 16 30 H 0.11 3.39 8.14 -2.39 -0.02 3.38 16 31 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -61.72 272.35 5.05 -56.67 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.10 Total: 17.94 kcal Atomic # 6 Polarization: -56.56 SS G_CDS: 2.58 Total: -53.99 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.27 Total: -52.32 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.92 Total: -13.83 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -61.72 5.05 -56.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885506.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.957 kcal (2) G-P(sol) polarization free energy of solvation -61.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds