Wall clock time and date at job start Mon Mar 30 2020 03:23:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86793 * 119.99921 * 2 1
4 4 H 1.48502 * 109.47343 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.47254 * 300.00348 * 3 2 1
6 6 H 1.48498 * 109.47367 * 60.00100 * 3 2 1
7 7 C 1.37877 * 119.99994 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00348 * 186.25188 * 7 2 1
9 9 C 1.50707 * 120.00191 * 5.97838 * 7 2 1
10 10 H 1.09003 * 109.53839 * 355.66429 * 9 7 2
11 11 C 1.51002 * 109.54484 * 115.83772 * 9 7 2
12 12 C 1.38374 * 118.41203 * 287.17926 * 11 9 7
13 13 C 1.38067 * 120.45410 * 179.54209 * 12 11 9
14 14 C 1.38293 * 119.84133 * 359.93414 * 13 12 11
15 15 C 1.37857 * 119.97485 * 0.17588 * 14 13 12
16 16 C 1.38440 * 121.60596 * 106.91164 * 11 9 7
17 17 O 1.35738 * 123.02254 * 0.82637 * 16 11 9
18 18 C 1.42833 * 118.81156 * 340.96459 * 17 16 11
19 19 C 1.52948 * 109.54427 * 235.48862 * 9 7 2
20 20 C 1.52540 * 118.35135 * 136.26330 * 19 9 7
21 21 C 1.52608 * 118.19068 * 66.81135 * 19 9 7
22 22 H 0.97002 * 120.00478 * 359.97438 * 1 2 3
23 23 H 1.07994 * 119.74770 * 359.53506 * 12 11 9
24 24 H 1.07995 * 120.07702 * 179.97438 * 13 12 11
25 25 H 1.08001 * 120.01444 * 180.20120 * 14 13 12
26 26 H 1.08006 * 119.79189 * 179.97438 * 15 14 13
27 27 H 1.08995 * 109.78448 * 286.37295 * 18 17 16
28 28 H 1.08995 * 109.78635 * 165.54292 * 18 17 16
29 29 H 1.08997 * 117.50914 * 359.41980 * 20 19 9
30 30 H 1.09003 * 117.50810 * 144.49206 * 20 19 9
31 31 H 1.08997 * 117.51395 * 215.75448 * 21 19 9
32 32 H 1.08997 * 117.51191 * 0.82020 * 21 19 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0797 -1.1969 0.1013
9 6 1.2572 -2.4956 -0.1370
10 1 0.1847 -2.3010 -0.1460
11 6 1.6578 -3.1756 -1.4244
12 6 1.1974 -2.6488 -2.6182
13 6 1.5455 -3.2312 -3.8206
14 6 2.3610 -4.3480 -3.8337
15 6 2.8210 -4.8789 -2.6475
16 6 2.4701 -4.2966 -1.4305
17 8 2.9472 -4.8706 -0.2968
18 6 2.9617 -4.1050 0.9089
19 6 1.6016 -3.4093 1.0402
20 6 0.4689 -4.1695 1.7227
21 6 1.1419 -2.9929 2.4345
22 1 -0.4851 0.8400 0.0004
23 1 0.5613 -1.7761 -2.6089
24 1 1.1823 -2.8153 -4.7488
25 1 2.6377 -4.8040 -4.7728
26 1 3.4575 -5.7514 -2.6611
27 1 3.7548 -3.3587 0.8626
28 1 3.1231 -4.7635 1.7623
29 1 -0.5410 -4.0166 1.3422
30 1 0.6859 -5.1719 2.0916
31 1 1.8017 -3.2215 3.2714
32 1 0.5753 -2.0659 2.5219
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260885506.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:22
Heat of formation + Delta-G solvation = -8.711884 kcal
Electronic energy + Delta-G solvation = -16113.936291 eV
Core-core repulsion = 13618.434994 eV
Total energy + Delta-G solvation = -2495.501298 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.46905 -38.64690 -37.58807 -34.98312 -32.67809 -31.07222 -29.23383 -27.65358
-25.27164 -23.44125 -23.13350 -22.54129 -19.66054 -18.59202 -18.23489 -17.25839
-16.79035 -16.57780 -15.85463 -15.45707 -14.91446 -14.50317 -14.40622 -14.27239
-13.70074 -13.40701 -13.03892 -12.90452 -12.63893 -12.30321 -12.14250 -12.00665
-11.91694 -11.71444 -11.09002 -10.82818 -10.56778 -10.33840 -9.47401 -8.89458
-8.14427 -6.24485 0.64451 0.70164 1.35127 1.38590 1.48747 2.37457
2.47329 3.03891 3.09162 3.26067 3.81037 3.98680 4.15060 4.22448
4.29425 4.33606 4.52137 4.65791 4.66665 4.74573 4.81378 4.85704
5.07665 5.12877 5.32490 5.33614 5.42491 5.57085 5.63572 5.71116
5.77536 6.04668 6.11497 6.23539 6.69106 6.88467 7.39449 8.90357
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.020987 B = 0.012482 C = 0.009198
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1333.865972 B = 2242.660340 C = 3043.406991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C 0.026 3.974
3 Si 0.946 3.054
4 H -0.270 1.270
5 H -0.281 1.281
6 H -0.278 1.278
7 C -0.501 4.501
8 H 0.042 0.958
9 C 0.099 3.901
10 H 0.047 0.953
11 C -0.132 4.132
12 C -0.101 4.101
13 C -0.158 4.158
14 C -0.103 4.103
15 C -0.160 4.160
16 C 0.095 3.905
17 O -0.327 6.327
18 C 0.109 3.891
19 C -0.166 4.166
20 C -0.166 4.166
21 C -0.146 4.146
22 H 0.263 0.737
23 H 0.095 0.905
24 H 0.139 0.861
25 H 0.160 0.840
26 H 0.143 0.857
27 H 0.053 0.947
28 H 0.128 0.872
29 H 0.073 0.927
30 H 0.112 0.888
31 H 0.112 0.888
32 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.028 -7.887 -1.685 9.014
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.173 4.173
3 Si 0.772 3.228
4 H -0.194 1.194
5 H -0.207 1.207
6 H -0.204 1.204
7 C -0.538 4.538
8 H 0.060 0.940
9 C 0.080 3.920
10 H 0.065 0.935
11 C -0.133 4.133
12 C -0.120 4.120
13 C -0.176 4.176
14 C -0.120 4.120
15 C -0.178 4.178
16 C 0.050 3.950
17 O -0.242 6.242
18 C 0.034 3.966
19 C -0.167 4.167
20 C -0.203 4.203
21 C -0.183 4.183
22 H 0.072 0.928
23 H 0.113 0.887
24 H 0.157 0.843
25 H 0.177 0.823
26 H 0.161 0.839
27 H 0.071 0.929
28 H 0.145 0.855
29 H 0.091 0.909
30 H 0.131 0.869
31 H 0.130 0.870
32 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 3.951 -7.942 -1.650 9.022
hybrid contribution -0.080 1.690 0.211 1.705
sum 3.871 -6.252 -1.439 7.492
Atomic orbital electron populations
1.70006 1.07058 1.27326 1.51572 1.25568 0.95497 1.01929 0.94342
0.85693 0.79173 0.80244 0.77726 1.19444 1.20651 1.20398 1.21027
0.92670 0.90831 1.49315 0.93961 1.17444 0.97378 0.91071 0.86074
0.93528 1.20694 0.98582 0.95606 0.98399 1.20885 0.99725 0.98797
0.92579 1.21250 1.01075 0.97954 0.97334 1.21099 0.97167 0.95826
0.97952 1.20890 1.04168 1.03057 0.89680 1.19028 0.95395 0.93801
0.86767 1.85700 1.79813 1.42064 1.16599 1.22475 0.94596 0.94423
0.85058 1.22174 0.95812 1.01919 0.96781 1.22957 0.96465 0.96774
1.04117 1.22608 1.03306 0.97984 0.94441 0.92790 0.88668 0.84296
0.82253 0.83889 0.92880 0.85462 0.90852 0.86942 0.86992 0.91270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -52.59 12.62 21.45 0.27 -52.32 16
2 C 0.03 1.40 5.45 84.65 0.46 1.86 16
3 Si 0.95 43.50 29.54 68.60 2.03 45.53 16
4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16
7 C -0.50 -27.17 7.95 25.60 0.20 -26.97 16
8 H 0.04 2.34 7.78 -2.91 -0.02 2.31 16
9 C 0.10 4.99 2.25 -12.21 -0.03 4.96 16
10 H 0.05 2.69 6.81 -2.39 -0.02 2.67 16
11 C -0.13 -6.18 5.11 -19.69 -0.10 -6.28 16
12 C -0.10 -4.55 9.49 22.26 0.21 -4.34 16
13 C -0.16 -5.60 10.05 22.24 0.22 -5.38 16
14 C -0.10 -3.18 10.03 22.19 0.22 -2.96 16
15 C -0.16 -5.51 9.90 22.46 0.22 -5.29 16
16 C 0.09 3.97 6.47 22.60 0.15 4.11 16
17 O -0.33 -12.91 10.19 -90.62 -0.92 -13.83 16
18 C 0.11 4.03 6.77 72.09 0.49 4.52 16
19 C -0.17 -7.00 1.48 -52.37 -0.08 -7.08 16
20 C -0.17 -6.12 9.95 30.47 0.30 -5.82 16
21 C -0.15 -5.64 9.84 30.50 0.30 -5.34 16
22 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16
23 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16
24 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16
25 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16
26 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16
27 H 0.05 2.06 8.10 -2.39 -0.02 2.05 16
28 H 0.13 3.66 8.13 -2.39 -0.02 3.64 16
29 H 0.07 2.90 8.13 -2.39 -0.02 2.88 16
30 H 0.11 3.39 8.14 -2.39 -0.02 3.38 16
31 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16
32 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16
Total: -1.00 -61.72 272.35 5.05 -56.67
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: 1.10 Total: 17.94 kcal
Atomic # 6 Polarization: -56.56 SS G_CDS: 2.58 Total: -53.99 kcal
Atomic # 7 Polarization: -52.59 SS G_CDS: 0.27 Total: -52.32 kcal
Atomic # 8 Polarization: -12.91 SS G_CDS: -0.92 Total: -13.83 kcal
Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal
Total: -61.72 5.05 -56.67 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260885506.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.957 kcal
(2) G-P(sol) polarization free energy of solvation -61.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.764 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.669 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds