Wall clock time and date at job start Mon Mar 30 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38749 * 119.65578 * 2 1 4 4 C 1.36734 * 120.41397 * 180.25375 * 3 2 1 5 5 C 1.39407 * 119.72001 * 359.45308 * 4 3 2 6 6 C 1.46780 * 134.37189 * 180.18045 * 5 4 3 7 7 C 1.34002 * 106.18294 * 180.32790 * 6 5 4 8 8 C 1.50702 * 124.91825 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47280 * 359.97438 * 8 7 6 10 10 C 1.53007 * 109.46997 * 119.99632 * 8 7 6 11 11 C 1.50701 * 109.46877 * 239.99256 * 8 7 6 12 12 H 1.07998 * 119.99815 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99931 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99778 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99935 * 0.02562 * 13 11 8 16 16 H 1.48495 * 109.47461 * 89.99883 * 15 13 11 17 17 H 1.48504 * 109.46728 * 210.00078 * 15 13 11 18 18 H 1.48500 * 109.47016 * 329.99328 * 15 13 11 19 19 O 1.34444 * 110.15683 * 359.97438 * 7 6 5 20 20 C 1.34812 * 110.88878 * 0.02562 * 19 7 6 21 21 C 1.37842 * 119.65871 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.46946 * 90.00451 * 1 2 3 23 23 H 1.09000 * 109.47131 * 210.00381 * 1 2 3 24 24 H 1.09001 * 109.47020 * 330.00358 * 1 2 3 25 25 H 1.08002 * 119.78919 * 359.97017 * 3 2 1 26 26 H 1.08003 * 120.14282 * 179.71964 * 4 3 2 27 27 H 1.07993 * 126.90757 * 0.32208 * 6 5 4 28 28 H 1.08999 * 109.47174 * 59.99851 * 10 8 7 29 29 H 1.08990 * 109.47044 * 179.97438 * 10 8 7 30 30 H 1.08996 * 109.46955 * 300.00254 * 10 8 7 31 31 H 0.97004 * 119.99829 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.09008 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2058 0.0000 4 6 3.5607 1.2239 -0.0052 5 6 4.2679 0.0224 0.0010 6 6 5.6927 -0.3300 0.0016 7 6 5.7463 -1.6689 0.0019 8 6 7.0155 -2.4815 0.0030 9 1 7.8756 -1.8119 0.0032 10 6 7.0551 -3.3636 1.2526 11 6 7.0564 -3.3510 -1.2272 12 1 6.2447 -3.3181 -1.9388 13 6 8.1300 -4.1884 -1.4441 14 7 8.1659 -4.9468 -2.5179 15 14 9.5335 -4.2457 -0.2127 16 1 9.2505 -5.2818 0.8128 17 1 10.7972 -4.5794 -0.9178 18 1 9.6688 -2.9215 0.4456 19 8 4.5037 -2.1823 0.0021 20 6 3.5785 -1.2017 0.0014 21 6 2.1891 -1.1978 0.0005 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6445 2.1358 -0.0005 26 1 4.0907 2.1649 -0.0098 27 1 6.5296 0.3526 0.0017 28 1 6.1950 -4.0332 1.2521 29 1 7.9728 -3.9516 1.2532 30 1 7.0254 -2.7347 2.1423 31 1 8.9211 -5.5363 -2.6703 32 1 1.6450 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261260762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:41 Heat of formation + Delta-G solvation = 18.110074 kcal Electronic energy + Delta-G solvation = -15284.266960 eV Core-core repulsion = 12789.928750 eV Total energy + Delta-G solvation = -2494.338210 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.88354 -37.96598 -34.69947 -32.85912 -31.71641 -30.07588 -29.76632 -26.07001 -25.14189 -22.93306 -21.83712 -21.01279 -19.53487 -16.90159 -16.69306 -16.01188 -15.54682 -15.05821 -14.52919 -13.77948 -13.56312 -13.52179 -13.15008 -12.65342 -12.45118 -12.30372 -12.10004 -11.69324 -11.55009 -11.22801 -11.17778 -10.70606 -10.44845 -10.25374 -9.61021 -9.50734 -9.22183 -8.67937 -8.22514 -7.47882 -6.17891 -4.20380 1.30738 1.69416 3.01230 3.20297 3.27973 3.32351 3.34984 4.00330 4.29471 4.88097 4.96599 5.10644 5.13164 5.23850 5.49077 5.57903 5.59484 5.72192 5.82810 5.90761 6.11616 6.20732 6.25146 6.32563 6.43777 6.58081 6.69496 6.70059 6.76597 6.96412 7.03724 7.20997 7.49195 7.87561 8.35865 8.85118 9.39481 10.94829 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.050964 B = 0.006170 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.271918 B = 4536.636727 C = 4708.879876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.078 4.078 5 C -0.121 4.121 6 C -0.257 4.257 7 C 0.117 3.883 8 C 0.072 3.928 9 H 0.063 0.937 10 C -0.149 4.149 11 C -0.520 4.520 12 H 0.078 0.922 13 C 0.075 3.925 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.265 1.265 19 O -0.181 6.181 20 C 0.043 3.957 21 C -0.104 4.104 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.151 0.849 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.267 0.733 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 9.974 6.809 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.082 4.082 3 C -0.159 4.159 4 C -0.096 4.096 5 C -0.122 4.122 6 C -0.276 4.276 7 C 0.069 3.931 8 C 0.053 3.947 9 H 0.081 0.919 10 C -0.207 4.207 11 C -0.557 4.557 12 H 0.096 0.904 13 C -0.128 4.128 14 N -0.529 5.529 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.221 1.221 18 H -0.190 1.190 19 O -0.081 6.081 20 C -0.004 4.004 21 C -0.123 4.123 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.169 0.831 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.817 9.546 6.695 15.242 hybrid contribution 0.912 -0.032 0.461 1.022 sum -8.905 9.513 7.156 14.867 Atomic orbital electron populations 1.20716 0.90834 1.02556 1.02221 1.19483 0.95734 0.91971 1.01037 1.20513 0.93796 0.97236 1.04306 1.20175 0.93578 0.96231 0.99655 1.20014 0.93725 0.93789 1.04633 1.22094 0.94440 0.94781 1.16305 1.23028 0.84240 0.92521 0.93336 1.18238 0.86015 0.94179 0.96263 0.91924 1.22173 1.01721 0.99885 0.96871 1.20804 1.07588 1.22323 1.05002 0.90356 1.24953 0.97772 0.94707 0.95334 1.69876 1.31328 1.25183 1.26525 0.86847 0.81463 0.79077 0.80869 1.20250 1.22115 1.18982 1.84064 1.14376 1.34482 1.75186 1.19684 0.91142 0.86523 1.03098 1.19702 0.88617 0.98557 1.05403 0.91270 0.91627 0.91609 0.86069 0.86064 0.83116 0.92136 0.93288 0.94569 0.92306 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.99 36.01 0.36 -0.67 16 2 C -0.08 -1.12 5.88 -104.58 -0.61 -1.73 16 3 C -0.14 -1.87 9.62 -39.94 -0.38 -2.26 16 4 C -0.08 -1.19 10.05 -39.69 -0.40 -1.59 16 5 C -0.12 -2.26 6.40 -105.16 -0.67 -2.94 16 6 C -0.26 -5.10 10.97 -37.62 -0.41 -5.52 16 7 C 0.12 2.61 5.68 -35.80 -0.20 2.41 16 8 C 0.07 1.69 2.28 -92.92 -0.21 1.48 16 9 H 0.06 1.43 7.14 -51.93 -0.37 1.06 16 10 C -0.15 -3.23 8.65 37.16 0.32 -2.91 16 11 C -0.52 -14.62 9.13 -34.44 -0.31 -14.94 16 12 H 0.08 2.45 7.98 -52.49 -0.42 2.03 16 13 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 14 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 15 Si 0.89 21.14 24.37 -169.99 -4.14 17.00 16 16 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.26 -5.91 6.53 56.52 0.37 -5.55 16 19 O -0.18 -4.08 10.58 3.91 0.04 -4.04 16 20 C 0.04 0.85 7.42 -38.47 -0.29 0.57 16 21 C -0.10 -1.69 9.70 -39.47 -0.38 -2.07 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 24 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 25 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 27 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 32 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 270.14 15.07 4.07 4.07 Total: -1.00 -30.65 270.14 -6.49 -37.14 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -3.94 Total: 0.11 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -3.30 Total: -28.12 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.77 Total: -26.17 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 17.00 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.65 -6.49 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.255 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds