Wall clock time and date at job start Mon Mar 30 2020 03:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38749 * 119.65578 * 2 1 4 4 C 1.36734 * 120.41397 * 180.25375 * 3 2 1 5 5 C 1.39407 * 119.72001 * 359.45308 * 4 3 2 6 6 C 1.46780 * 134.37189 * 180.18045 * 5 4 3 7 7 C 1.34002 * 106.18294 * 180.32790 * 6 5 4 8 8 C 1.50702 * 124.91825 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47280 * 359.97438 * 8 7 6 10 10 C 1.53007 * 109.46997 * 119.99632 * 8 7 6 11 11 C 1.50701 * 109.46877 * 239.99256 * 8 7 6 12 12 H 1.07998 * 119.99815 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99931 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99778 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 119.99935 * 0.02562 * 13 11 8 16 16 H 1.48495 * 109.47461 * 89.99883 * 15 13 11 17 17 H 1.48504 * 109.46728 * 210.00078 * 15 13 11 18 18 H 1.48500 * 109.47016 * 329.99328 * 15 13 11 19 19 O 1.34444 * 110.15683 * 359.97438 * 7 6 5 20 20 C 1.34812 * 110.88878 * 0.02562 * 19 7 6 21 21 C 1.37842 * 119.65871 * 179.97438 * 2 1 3 22 22 H 1.08992 * 109.46946 * 90.00451 * 1 2 3 23 23 H 1.09000 * 109.47131 * 210.00381 * 1 2 3 24 24 H 1.09001 * 109.47020 * 330.00358 * 1 2 3 25 25 H 1.08002 * 119.78919 * 359.97017 * 3 2 1 26 26 H 1.08003 * 120.14282 * 179.71964 * 4 3 2 27 27 H 1.07993 * 126.90757 * 0.32208 * 6 5 4 28 28 H 1.08999 * 109.47174 * 59.99851 * 10 8 7 29 29 H 1.08990 * 109.47044 * 179.97438 * 10 8 7 30 30 H 1.08996 * 109.46955 * 300.00254 * 10 8 7 31 31 H 0.97004 * 119.99829 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.09008 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2058 0.0000 4 6 3.5607 1.2239 -0.0052 5 6 4.2679 0.0224 0.0010 6 6 5.6927 -0.3300 0.0016 7 6 5.7463 -1.6689 0.0019 8 6 7.0155 -2.4815 0.0030 9 1 7.8756 -1.8119 0.0032 10 6 7.0551 -3.3636 1.2526 11 6 7.0564 -3.3510 -1.2272 12 1 6.2447 -3.3181 -1.9388 13 6 8.1300 -4.1884 -1.4441 14 7 8.1659 -4.9468 -2.5179 15 14 9.5335 -4.2457 -0.2127 16 1 9.2505 -5.2818 0.8128 17 1 10.7972 -4.5794 -0.9178 18 1 9.6688 -2.9215 0.4456 19 8 4.5037 -2.1823 0.0021 20 6 3.5785 -1.2017 0.0014 21 6 2.1891 -1.1978 0.0005 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6445 2.1358 -0.0005 26 1 4.0907 2.1649 -0.0098 27 1 6.5296 0.3526 0.0017 28 1 6.1950 -4.0332 1.2521 29 1 7.9728 -3.9516 1.2532 30 1 7.0254 -2.7347 2.1423 31 1 8.9211 -5.5363 -2.6703 32 1 1.6450 -2.1307 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:40 Heat of formation + Delta-G solvation = -0.333706 kcal Electronic energy + Delta-G solvation = -15285.066743 eV Core-core repulsion = 12789.928750 eV Total energy + Delta-G solvation = -2495.137993 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.34286 -39.19113 -36.56725 -34.22521 -33.63600 -31.32973 -31.12893 -27.36549 -27.08647 -24.27967 -23.38165 -22.41552 -21.03101 -18.91011 -18.09587 -17.57817 -17.09263 -16.58743 -15.96804 -15.22031 -15.09714 -14.86337 -14.40522 -14.27925 -14.03401 -13.82585 -13.21116 -13.01016 -12.91042 -12.76018 -12.56662 -12.35499 -12.10824 -11.79534 -11.45858 -11.35481 -10.84694 -10.74187 -9.50540 -8.87961 -8.36237 -6.45126 0.03018 0.44245 1.31764 1.36823 1.48429 1.49870 1.91629 2.28602 2.77067 2.98311 3.52713 3.80230 4.01507 4.15880 4.25825 4.34250 4.37373 4.50601 4.57971 4.73317 4.78336 4.84386 4.89602 4.90788 4.98076 5.23153 5.31865 5.38145 5.43676 5.45505 5.57556 5.61303 5.91108 6.16067 6.38113 6.58873 7.19055 8.80977 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.050964 B = 0.006170 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.271918 B = 4536.636727 C = 4708.879876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.066 4.066 3 C -0.133 4.133 4 C -0.077 4.077 5 C -0.150 4.150 6 C -0.242 4.242 7 C 0.070 3.930 8 C 0.073 3.927 9 H 0.076 0.924 10 C -0.144 4.144 11 C -0.528 4.528 12 H 0.021 0.979 13 C 0.016 3.984 14 N -0.946 5.946 15 Si 0.957 3.043 16 H -0.262 1.262 17 H -0.293 1.293 18 H -0.234 1.234 19 O -0.214 6.214 20 C 0.010 3.990 21 C -0.129 4.129 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.165 0.835 26 H 0.150 0.850 27 H 0.174 0.826 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.270 0.730 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 12.721 8.765 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.066 4.066 3 C -0.151 4.151 4 C -0.095 4.095 5 C -0.151 4.151 6 C -0.260 4.260 7 C 0.022 3.978 8 C 0.054 3.946 9 H 0.094 0.906 10 C -0.201 4.201 11 C -0.566 4.566 12 H 0.039 0.961 13 C -0.182 4.182 14 N -0.585 5.585 15 Si 0.781 3.219 16 H -0.188 1.188 17 H -0.220 1.220 18 H -0.158 1.158 19 O -0.116 6.116 20 C -0.037 4.037 21 C -0.147 4.147 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.183 0.817 26 H 0.168 0.832 27 H 0.191 0.809 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.731 12.317 8.664 18.491 hybrid contribution 0.910 -0.766 -0.235 1.213 sum -9.821 11.551 8.429 17.347 Atomic orbital electron populations 1.20844 0.87555 1.04314 1.03564 1.20076 0.97985 0.91035 0.97478 1.21070 0.93291 0.98814 1.01888 1.20606 0.94592 0.95959 0.98360 1.20277 0.93165 0.94904 1.06734 1.22450 0.96011 0.94100 1.13466 1.22855 0.84056 0.93409 0.97473 1.18111 0.87656 0.94010 0.94795 0.90645 1.22081 1.01007 0.99806 0.97250 1.20985 1.06006 1.23572 1.06041 0.96057 1.25948 1.00914 0.93880 0.97471 1.70045 1.32721 1.26575 1.29146 0.85733 0.76949 0.80889 0.78287 1.18795 1.22039 1.15760 1.83963 1.15097 1.36265 1.76315 1.20327 0.92212 0.86578 1.04598 1.20098 0.87496 1.00419 1.06726 0.89912 0.90874 0.88973 0.81710 0.83187 0.80877 0.93535 0.93292 0.91196 0.92064 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.99 71.24 0.71 -0.90 16 2 C -0.07 -1.59 5.88 -19.84 -0.12 -1.70 16 3 C -0.13 -2.99 9.62 22.04 0.21 -2.78 16 4 C -0.08 -2.13 10.05 22.20 0.22 -1.90 16 5 C -0.15 -5.55 6.40 -20.21 -0.13 -5.67 16 6 C -0.24 -9.58 10.97 23.54 0.26 -9.33 16 7 C 0.07 3.22 5.68 24.72 0.14 3.36 16 8 C 0.07 3.50 2.28 -12.28 -0.03 3.48 16 9 H 0.08 3.38 7.14 -2.39 -0.02 3.36 16 10 C -0.14 -6.17 8.65 71.98 0.62 -5.55 16 11 C -0.53 -31.38 9.13 25.60 0.23 -31.15 16 12 H 0.02 1.45 7.98 -2.91 -0.02 1.42 16 13 C 0.02 0.92 5.45 84.66 0.46 1.38 16 14 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 15 Si 0.96 43.55 24.37 68.60 1.67 45.23 16 16 H -0.26 -11.31 6.87 99.48 0.68 -10.63 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.23 -9.47 6.53 99.48 0.65 -8.82 16 19 O -0.21 -10.28 10.58 -8.91 -0.09 -10.37 16 20 C 0.01 0.39 7.42 22.99 0.17 0.56 16 21 C -0.13 -4.13 9.70 22.34 0.22 -3.91 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 24 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 25 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 26 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 27 H 0.17 5.77 8.06 -2.91 -0.02 5.74 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.06 3.27 -2.39 -0.01 2.05 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 32 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -72.13 270.14 5.88 -66.25 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.03 Total: 12.55 kcal Atomic # 6 Polarization: -57.09 SS G_CDS: 2.98 Total: -54.11 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.30 Total: -59.53 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.09 Total: -10.37 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.67 Total: 45.23 kcal Total: -72.13 5.88 -66.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.913 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds