Wall clock time and date at job start Mon Mar 30 2020 03:33:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38747 * 119.65691 * 2 1
4 4 C 1.36741 * 120.41325 * 179.79778 * 3 2 1
5 5 C 1.39398 * 119.71976 * 0.44641 * 4 3 2
6 6 C 1.46782 * 134.37163 * 179.88274 * 5 4 3
7 7 C 1.34000 * 106.18571 * 179.70787 * 6 5 4
8 8 C 1.50697 * 124.91928 * 179.97438 * 7 6 5
9 9 H 1.08996 * 109.47623 * 0.03066 * 8 7 6
10 10 C 1.53001 * 109.47575 * 240.02608 * 8 7 6
11 11 C 1.50706 * 109.46859 * 120.02798 * 8 7 6
12 12 H 1.08004 * 119.99700 * 0.02562 * 11 8 7
13 13 C 1.37878 * 119.99987 * 179.97438 * 11 8 7
14 14 N 1.31514 * 120.00300 * 0.02562 * 13 11 8
15 15 Si 1.86799 * 119.99745 * 180.02562 * 13 11 8
16 16 H 1.48507 * 109.47154 * 60.00237 * 15 13 11
17 17 H 1.48505 * 109.47177 * 180.02562 * 15 13 11
18 18 H 1.48504 * 109.47468 * 300.00361 * 15 13 11
19 19 O 1.34446 * 110.15646 * 0.02562 * 7 6 5
20 20 C 1.34810 * 110.88773 * 359.97438 * 19 7 6
21 21 C 1.37850 * 119.66042 * 180.02562 * 2 1 3
22 22 H 1.09000 * 109.47154 * 269.97646 * 1 2 3
23 23 H 1.08997 * 109.47088 * 29.97695 * 1 2 3
24 24 H 1.09000 * 109.47250 * 149.97548 * 1 2 3
25 25 H 1.07997 * 119.78816 * 0.04736 * 3 2 1
26 26 H 1.08002 * 120.13704 * 180.02562 * 4 3 2
27 27 H 1.08002 * 126.90719 * 359.67501 * 6 5 4
28 28 H 1.09000 * 109.46799 * 59.99808 * 10 8 7
29 29 H 1.08996 * 109.47179 * 180.02562 * 10 8 7
30 30 H 1.09005 * 109.47115 * 300.00646 * 10 8 7
31 31 H 0.96991 * 120.00291 * 179.97438 * 14 13 11
32 32 H 1.08002 * 120.08889 * 0.02562 * 21 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1935 1.2057 0.0000
4 6 3.5608 1.2238 0.0042
5 6 4.2678 0.0224 -0.0010
6 6 5.6927 -0.3301 -0.0011
7 6 5.7462 -1.6690 -0.0011
8 6 7.0154 -2.4815 -0.0018
9 1 7.8755 -1.8121 -0.0016
10 6 7.0559 -3.3635 -1.2514
11 6 7.0556 -3.3512 1.2284
12 1 6.2431 -3.3191 1.9392
13 6 8.1291 -4.1887 1.4457
14 7 9.1182 -4.2283 0.5799
15 14 8.1785 -5.2672 2.9701
16 1 7.0064 -6.1792 2.9696
17 1 9.4292 -6.0679 2.9697
18 1 8.1395 -4.4117 4.1834
19 8 4.5037 -2.1824 -0.0017
20 6 3.5785 -1.2018 -0.0015
21 6 2.1891 -1.1979 -0.0005
22 1 -0.3633 -0.0004 1.0277
23 1 -0.3633 0.8902 -0.5135
24 1 -0.3634 -0.8898 -0.5142
25 1 1.6445 2.1357 0.0008
26 1 4.0907 2.1649 0.0046
27 1 6.5297 0.3525 -0.0015
28 1 7.0267 -2.7344 -2.1411
29 1 7.9736 -3.9515 -1.2515
30 1 6.1957 -4.0330 -1.2515
31 1 9.8735 -4.8172 0.7330
32 1 1.6450 -2.1308 -0.0014
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261260763.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:43
Heat of formation + Delta-G solvation = 8.735672 kcal
Electronic energy + Delta-G solvation = -15243.348571 eV
Core-core repulsion = 12748.603856 eV
Total energy + Delta-G solvation = -2494.744715 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.105 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.78805 -37.90160 -34.50839 -32.80235 -31.39238 -30.01679 -29.33079 -25.83796
-25.21859 -22.80442 -21.71806 -20.91135 -19.50650 -16.71123 -16.65559 -15.74251
-15.27299 -15.03069 -14.49369 -13.71730 -13.51051 -13.36913 -12.85535 -12.53931
-12.32545 -12.06875 -11.66426 -11.51961 -11.38032 -11.01192 -10.90813 -10.66653
-10.40024 -10.27814 -9.80961 -9.49227 -9.08286 -8.49856 -8.17075 -7.38625
-6.12450 -4.20599 1.36888 1.74451 3.12337 3.28588 3.32297 3.37220
3.44341 4.05664 4.36237 4.95511 5.02165 5.17700 5.19534 5.27438
5.54447 5.60967 5.64090 5.79073 5.88689 6.11025 6.22355 6.32784
6.63413 6.67126 6.72440 6.76824 6.90922 6.93454 7.10653 7.17318
7.46587 7.68534 7.92627 7.97540 8.21375 8.79793 9.44652 10.93060
Molecular weight = 230.10amu
Principal moments of inertia in cm(-1)
A = 0.041188 B = 0.006181 C = 0.005852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 679.648302 B = 4529.048572 C = 4783.819682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 C -0.085 4.085
3 C -0.141 4.141
4 C -0.080 4.080
5 C -0.119 4.119
6 C -0.265 4.265
7 C 0.114 3.886
8 C 0.103 3.897
9 H 0.064 0.936
10 C -0.137 4.137
11 C -0.517 4.517
12 H 0.059 0.941
13 C 0.066 3.934
14 N -0.889 5.889
15 Si 0.900 3.100
16 H -0.275 1.275
17 H -0.285 1.285
18 H -0.276 1.276
19 O -0.184 6.184
20 C 0.039 3.961
21 C -0.105 4.105
22 H 0.068 0.932
23 H 0.065 0.935
24 H 0.064 0.936
25 H 0.120 0.880
26 H 0.121 0.879
27 H 0.150 0.850
28 H 0.014 0.986
29 H 0.093 0.907
30 H 0.034 0.966
31 H 0.265 0.735
32 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.412 7.729 -1.910 13.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.085 4.085
3 C -0.159 4.159
4 C -0.098 4.098
5 C -0.120 4.120
6 C -0.284 4.284
7 C 0.066 3.934
8 C 0.085 3.915
9 H 0.081 0.919
10 C -0.195 4.195
11 C -0.555 4.555
12 H 0.078 0.922
13 C -0.136 4.136
14 N -0.527 5.527
15 Si 0.727 3.273
16 H -0.201 1.201
17 H -0.211 1.211
18 H -0.201 1.201
19 O -0.084 6.084
20 C -0.009 4.009
21 C -0.123 4.123
22 H 0.086 0.914
23 H 0.084 0.916
24 H 0.083 0.917
25 H 0.138 0.862
26 H 0.139 0.861
27 H 0.168 0.832
28 H 0.033 0.967
29 H 0.112 0.888
30 H 0.053 0.947
31 H 0.075 0.925
32 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -11.301 7.348 -1.945 13.619
hybrid contribution 0.186 -0.400 0.852 0.960
sum -11.114 6.949 -1.093 13.153
Atomic orbital electron populations
1.20705 0.90916 1.02513 1.02114 1.19461 0.95662 0.92000 1.01400
1.20499 0.93800 0.97183 1.04408 1.20173 0.93561 0.96257 0.99825
1.20051 0.93894 0.93729 1.04282 1.22110 0.94216 0.94979 1.17102
1.23768 0.84518 0.93002 0.92148 1.17860 0.83954 0.93438 0.96244
0.91859 1.21808 1.03517 0.99579 0.94608 1.20950 1.05779 1.23085
1.05661 0.92231 1.24918 0.95175 0.96700 0.96840 1.69847 1.08862
1.38682 1.35305 0.86522 0.77421 0.80378 0.82968 1.20077 1.21070
1.20100 1.84074 1.14581 1.34531 1.75226 1.19707 0.91165 0.86693
1.03286 1.19683 0.88651 0.98459 1.05518 0.91377 0.91645 0.91685
0.86156 0.86132 0.83243 0.96722 0.88830 0.94693 0.92547 0.85680
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.05 9.99 36.00 0.36 -0.69 16
2 C -0.09 -1.19 5.88 -104.58 -0.61 -1.80 16
3 C -0.14 -1.94 9.62 -39.93 -0.38 -2.33 16
4 C -0.08 -1.27 10.05 -39.69 -0.40 -1.66 16
5 C -0.12 -2.31 6.40 -105.16 -0.67 -2.98 16
6 C -0.27 -5.52 10.97 -37.62 -0.41 -5.94 16
7 C 0.11 2.65 5.67 -35.80 -0.20 2.45 16
8 C 0.10 2.60 2.69 -92.92 -0.25 2.35 16
9 H 0.06 1.64 8.08 -51.93 -0.42 1.22 16
10 C -0.14 -3.32 8.95 37.16 0.33 -2.99 16
11 C -0.52 -14.23 8.55 -34.44 -0.29 -14.53 16
12 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16
13 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16
14 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16
15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16
16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16
18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
19 O -0.18 -4.25 10.58 3.91 0.04 -4.21 16
20 C 0.04 0.79 7.42 -38.47 -0.29 0.51 16
21 C -0.10 -1.73 9.70 -39.46 -0.38 -2.11 16
22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
23 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16
24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16
25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16
26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16
27 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16
28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16
30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
32 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16
LS Contribution 276.96 15.07 4.17 4.17
Total: -1.00 -28.82 276.96 -7.55 -36.38
By element:
Atomic # 1 Polarization: 3.62 SS G_CDS: -4.07 Total: -0.45 kcal
Atomic # 6 Polarization: -24.73 SS G_CDS: -3.30 Total: -28.03 kcal
Atomic # 7 Polarization: -24.60 SS G_CDS: 0.63 Total: -23.97 kcal
Atomic # 8 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal
Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -28.82 -7.55 -36.38 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261260763.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.111 kcal
(2) G-P(sol) polarization free energy of solvation -28.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.289 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.736 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds