Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38747 * 119.65691 * 2 1 4 4 C 1.36741 * 120.41325 * 179.79778 * 3 2 1 5 5 C 1.39398 * 119.71976 * 0.44641 * 4 3 2 6 6 C 1.46782 * 134.37163 * 179.88274 * 5 4 3 7 7 C 1.34000 * 106.18571 * 179.70787 * 6 5 4 8 8 C 1.50697 * 124.91928 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47623 * 0.03066 * 8 7 6 10 10 C 1.53001 * 109.47575 * 240.02608 * 8 7 6 11 11 C 1.50706 * 109.46859 * 120.02798 * 8 7 6 12 12 H 1.08004 * 119.99700 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99987 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00300 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47154 * 60.00237 * 15 13 11 17 17 H 1.48505 * 109.47177 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47468 * 300.00361 * 15 13 11 19 19 O 1.34446 * 110.15646 * 0.02562 * 7 6 5 20 20 C 1.34810 * 110.88773 * 359.97438 * 19 7 6 21 21 C 1.37850 * 119.66042 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47154 * 269.97646 * 1 2 3 23 23 H 1.08997 * 109.47088 * 29.97695 * 1 2 3 24 24 H 1.09000 * 109.47250 * 149.97548 * 1 2 3 25 25 H 1.07997 * 119.78816 * 0.04736 * 3 2 1 26 26 H 1.08002 * 120.13704 * 180.02562 * 4 3 2 27 27 H 1.08002 * 126.90719 * 359.67501 * 6 5 4 28 28 H 1.09000 * 109.46799 * 59.99808 * 10 8 7 29 29 H 1.08996 * 109.47179 * 180.02562 * 10 8 7 30 30 H 1.09005 * 109.47115 * 300.00646 * 10 8 7 31 31 H 0.96991 * 120.00291 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.08889 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2057 0.0000 4 6 3.5608 1.2238 0.0042 5 6 4.2678 0.0224 -0.0010 6 6 5.6927 -0.3301 -0.0011 7 6 5.7462 -1.6690 -0.0011 8 6 7.0154 -2.4815 -0.0018 9 1 7.8755 -1.8121 -0.0016 10 6 7.0559 -3.3635 -1.2514 11 6 7.0556 -3.3512 1.2284 12 1 6.2431 -3.3191 1.9392 13 6 8.1291 -4.1887 1.4457 14 7 9.1182 -4.2283 0.5799 15 14 8.1785 -5.2672 2.9701 16 1 7.0064 -6.1792 2.9696 17 1 9.4292 -6.0679 2.9697 18 1 8.1395 -4.4117 4.1834 19 8 4.5037 -2.1824 -0.0017 20 6 3.5785 -1.2018 -0.0015 21 6 2.1891 -1.1979 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6445 2.1357 0.0008 26 1 4.0907 2.1649 0.0046 27 1 6.5297 0.3525 -0.0015 28 1 7.0267 -2.7344 -2.1411 29 1 7.9736 -3.9515 -1.2515 30 1 6.1957 -4.0330 -1.2515 31 1 9.8735 -4.8172 0.7330 32 1 1.6450 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261260763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = 8.735672 kcal Electronic energy + Delta-G solvation = -15243.348571 eV Core-core repulsion = 12748.603856 eV Total energy + Delta-G solvation = -2494.744715 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78805 -37.90160 -34.50839 -32.80235 -31.39238 -30.01679 -29.33079 -25.83796 -25.21859 -22.80442 -21.71806 -20.91135 -19.50650 -16.71123 -16.65559 -15.74251 -15.27299 -15.03069 -14.49369 -13.71730 -13.51051 -13.36913 -12.85535 -12.53931 -12.32545 -12.06875 -11.66426 -11.51961 -11.38032 -11.01192 -10.90813 -10.66653 -10.40024 -10.27814 -9.80961 -9.49227 -9.08286 -8.49856 -8.17075 -7.38625 -6.12450 -4.20599 1.36888 1.74451 3.12337 3.28588 3.32297 3.37220 3.44341 4.05664 4.36237 4.95511 5.02165 5.17700 5.19534 5.27438 5.54447 5.60967 5.64090 5.79073 5.88689 6.11025 6.22355 6.32784 6.63413 6.67126 6.72440 6.76824 6.90922 6.93454 7.10653 7.17318 7.46587 7.68534 7.92627 7.97540 8.21375 8.79793 9.44652 10.93060 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.041188 B = 0.006181 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.648302 B = 4529.048572 C = 4783.819682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.080 4.080 5 C -0.119 4.119 6 C -0.265 4.265 7 C 0.114 3.886 8 C 0.103 3.897 9 H 0.064 0.936 10 C -0.137 4.137 11 C -0.517 4.517 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.276 1.276 19 O -0.184 6.184 20 C 0.039 3.961 21 C -0.105 4.105 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.150 0.850 28 H 0.014 0.986 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 7.729 -1.910 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.085 4.085 3 C -0.159 4.159 4 C -0.098 4.098 5 C -0.120 4.120 6 C -0.284 4.284 7 C 0.066 3.934 8 C 0.085 3.915 9 H 0.081 0.919 10 C -0.195 4.195 11 C -0.555 4.555 12 H 0.078 0.922 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 O -0.084 6.084 20 C -0.009 4.009 21 C -0.123 4.123 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.168 0.832 28 H 0.033 0.967 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.301 7.348 -1.945 13.619 hybrid contribution 0.186 -0.400 0.852 0.960 sum -11.114 6.949 -1.093 13.153 Atomic orbital electron populations 1.20705 0.90916 1.02513 1.02114 1.19461 0.95662 0.92000 1.01400 1.20499 0.93800 0.97183 1.04408 1.20173 0.93561 0.96257 0.99825 1.20051 0.93894 0.93729 1.04282 1.22110 0.94216 0.94979 1.17102 1.23768 0.84518 0.93002 0.92148 1.17860 0.83954 0.93438 0.96244 0.91859 1.21808 1.03517 0.99579 0.94608 1.20950 1.05779 1.23085 1.05661 0.92231 1.24918 0.95175 0.96700 0.96840 1.69847 1.08862 1.38682 1.35305 0.86522 0.77421 0.80378 0.82968 1.20077 1.21070 1.20100 1.84074 1.14581 1.34531 1.75226 1.19707 0.91165 0.86693 1.03286 1.19683 0.88651 0.98459 1.05518 0.91377 0.91645 0.91685 0.86156 0.86132 0.83243 0.96722 0.88830 0.94693 0.92547 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.99 36.00 0.36 -0.69 16 2 C -0.09 -1.19 5.88 -104.58 -0.61 -1.80 16 3 C -0.14 -1.94 9.62 -39.93 -0.38 -2.33 16 4 C -0.08 -1.27 10.05 -39.69 -0.40 -1.66 16 5 C -0.12 -2.31 6.40 -105.16 -0.67 -2.98 16 6 C -0.27 -5.52 10.97 -37.62 -0.41 -5.94 16 7 C 0.11 2.65 5.67 -35.80 -0.20 2.45 16 8 C 0.10 2.60 2.69 -92.92 -0.25 2.35 16 9 H 0.06 1.64 8.08 -51.93 -0.42 1.22 16 10 C -0.14 -3.32 8.95 37.16 0.33 -2.99 16 11 C -0.52 -14.23 8.55 -34.44 -0.29 -14.53 16 12 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 13 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 14 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 O -0.18 -4.25 10.58 3.91 0.04 -4.21 16 20 C 0.04 0.79 7.42 -38.47 -0.29 0.51 16 21 C -0.10 -1.73 9.70 -39.46 -0.38 -2.11 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 276.96 15.07 4.17 4.17 Total: -1.00 -28.82 276.96 -7.55 -36.38 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.07 Total: -0.45 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -3.30 Total: -28.03 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.63 Total: -23.97 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.82 -7.55 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.111 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds