Wall clock time and date at job start Mon Mar 30 2020 03:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38747 * 119.65691 * 2 1 4 4 C 1.36741 * 120.41325 * 179.79778 * 3 2 1 5 5 C 1.39398 * 119.71976 * 0.44641 * 4 3 2 6 6 C 1.46782 * 134.37163 * 179.88274 * 5 4 3 7 7 C 1.34000 * 106.18571 * 179.70787 * 6 5 4 8 8 C 1.50697 * 124.91928 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47623 * 0.03066 * 8 7 6 10 10 C 1.53001 * 109.47575 * 240.02608 * 8 7 6 11 11 C 1.50706 * 109.46859 * 120.02798 * 8 7 6 12 12 H 1.08004 * 119.99700 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99987 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00300 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47154 * 60.00237 * 15 13 11 17 17 H 1.48505 * 109.47177 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47468 * 300.00361 * 15 13 11 19 19 O 1.34446 * 110.15646 * 0.02562 * 7 6 5 20 20 C 1.34810 * 110.88773 * 359.97438 * 19 7 6 21 21 C 1.37850 * 119.66042 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47154 * 269.97646 * 1 2 3 23 23 H 1.08997 * 109.47088 * 29.97695 * 1 2 3 24 24 H 1.09000 * 109.47250 * 149.97548 * 1 2 3 25 25 H 1.07997 * 119.78816 * 0.04736 * 3 2 1 26 26 H 1.08002 * 120.13704 * 180.02562 * 4 3 2 27 27 H 1.08002 * 126.90719 * 359.67501 * 6 5 4 28 28 H 1.09000 * 109.46799 * 59.99808 * 10 8 7 29 29 H 1.08996 * 109.47179 * 180.02562 * 10 8 7 30 30 H 1.09005 * 109.47115 * 300.00646 * 10 8 7 31 31 H 0.96991 * 120.00291 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.08889 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2057 0.0000 4 6 3.5608 1.2238 0.0042 5 6 4.2678 0.0224 -0.0010 6 6 5.6927 -0.3301 -0.0011 7 6 5.7462 -1.6690 -0.0011 8 6 7.0154 -2.4815 -0.0018 9 1 7.8755 -1.8121 -0.0016 10 6 7.0559 -3.3635 -1.2514 11 6 7.0556 -3.3512 1.2284 12 1 6.2431 -3.3191 1.9392 13 6 8.1291 -4.1887 1.4457 14 7 9.1182 -4.2283 0.5799 15 14 8.1785 -5.2672 2.9701 16 1 7.0064 -6.1792 2.9696 17 1 9.4292 -6.0679 2.9697 18 1 8.1395 -4.4117 4.1834 19 8 4.5037 -2.1824 -0.0017 20 6 3.5785 -1.2018 -0.0015 21 6 2.1891 -1.1979 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6445 2.1357 0.0008 26 1 4.0907 2.1649 0.0046 27 1 6.5297 0.3525 -0.0015 28 1 7.0267 -2.7344 -2.1411 29 1 7.9736 -3.9515 -1.2515 30 1 6.1957 -4.0330 -1.2515 31 1 9.8735 -4.8172 0.7330 32 1 1.6450 -2.1308 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260763.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:43 Heat of formation + Delta-G solvation = -5.930928 kcal Electronic energy + Delta-G solvation = -15243.984563 eV Core-core repulsion = 12748.603856 eV Total energy + Delta-G solvation = -2495.380706 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.30772 -39.16666 -36.46260 -34.17569 -33.19959 -31.31187 -30.81734 -27.38533 -27.02331 -24.19161 -23.33736 -22.38149 -21.05916 -18.62486 -18.07127 -17.36413 -16.94130 -16.62258 -15.92940 -15.11286 -14.93026 -14.73484 -14.39977 -14.06795 -13.80941 -13.44375 -13.00225 -12.91980 -12.86959 -12.75243 -12.55960 -12.31749 -12.29003 -11.89158 -11.65526 -11.28334 -10.73752 -10.57807 -9.49321 -8.86232 -8.19382 -6.35727 0.05280 0.45410 1.39236 1.41035 1.48005 1.55964 1.94568 2.39128 2.78170 3.07940 3.60908 3.82724 4.02779 4.17923 4.34081 4.41148 4.50703 4.69089 4.75651 4.85577 4.90881 4.92002 4.94407 5.03407 5.25317 5.34473 5.38886 5.44932 5.57723 5.60170 5.64312 5.88357 5.92186 6.13553 6.43291 6.67293 7.32317 8.84603 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.041188 B = 0.006181 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.648302 B = 4529.048572 C = 4783.819682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.067 4.067 3 C -0.132 4.132 4 C -0.080 4.080 5 C -0.148 4.148 6 C -0.254 4.254 7 C 0.072 3.928 8 C 0.103 3.897 9 H 0.048 0.952 10 C -0.125 4.125 11 C -0.539 4.539 12 H 0.043 0.957 13 C 0.024 3.976 14 N -0.909 5.909 15 Si 0.960 3.040 16 H -0.274 1.274 17 H -0.274 1.274 18 H -0.272 1.272 19 O -0.212 6.212 20 C 0.008 3.992 21 C -0.126 4.126 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.165 0.835 26 H 0.147 0.853 27 H 0.164 0.836 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 9.441 -1.529 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.098 4.098 5 C -0.149 4.149 6 C -0.273 4.273 7 C 0.024 3.976 8 C 0.085 3.915 9 H 0.065 0.935 10 C -0.183 4.183 11 C -0.577 4.577 12 H 0.061 0.939 13 C -0.176 4.176 14 N -0.547 5.547 15 Si 0.784 3.216 16 H -0.200 1.200 17 H -0.198 1.198 18 H -0.197 1.197 19 O -0.114 6.114 20 C -0.038 4.038 21 C -0.144 4.144 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.182 0.818 26 H 0.165 0.835 27 H 0.182 0.818 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.651 9.070 -1.571 16.464 hybrid contribution 0.729 -0.788 0.707 1.285 sum -12.922 8.282 -0.864 15.373 Atomic orbital electron populations 1.20836 0.87468 1.04281 1.03604 1.20074 0.98003 0.91003 0.97642 1.21058 0.93149 0.98898 1.01868 1.20586 0.94671 0.95870 0.98697 1.20264 0.92995 0.95077 1.06589 1.22395 0.95904 0.94330 1.14633 1.23342 0.84326 0.93640 0.96289 1.17625 0.84994 0.93156 0.95718 0.93451 1.21638 1.01939 0.99363 0.95343 1.21145 1.05692 1.24287 1.06558 0.93851 1.25648 0.94707 0.97687 0.99590 1.69941 1.09156 1.39104 1.36537 0.85589 0.77704 0.78710 0.79562 1.19970 1.19843 1.19703 1.83963 1.14977 1.36127 1.76317 1.20340 0.92255 0.86519 1.04724 1.20097 0.87319 1.00453 1.06544 0.89793 0.89108 0.90830 0.81755 0.83507 0.81838 0.94846 0.90665 0.95575 0.92239 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.99 71.24 0.71 -0.87 16 2 C -0.07 -1.63 5.88 -19.84 -0.12 -1.75 16 3 C -0.13 -3.06 9.62 22.04 0.21 -2.85 16 4 C -0.08 -2.32 10.05 22.20 0.22 -2.10 16 5 C -0.15 -5.72 6.40 -20.21 -0.13 -5.85 16 6 C -0.25 -10.85 10.97 23.54 0.26 -10.59 16 7 C 0.07 3.50 5.67 24.72 0.14 3.64 16 8 C 0.10 5.49 2.69 -12.28 -0.03 5.45 16 9 H 0.05 2.60 8.08 -2.39 -0.02 2.58 16 10 C -0.13 -6.33 8.95 71.98 0.64 -5.69 16 11 C -0.54 -31.00 8.55 25.60 0.22 -30.78 16 12 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 13 C 0.02 1.32 5.30 84.66 0.45 1.77 16 14 N -0.91 -51.49 11.32 21.45 0.24 -51.25 16 15 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 O -0.21 -10.32 10.58 -8.91 -0.09 -10.41 16 20 C 0.01 0.35 7.42 22.99 0.17 0.52 16 21 C -0.13 -4.01 9.70 22.35 0.22 -3.80 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 24 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 25 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 26 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 27 H 0.16 6.20 8.06 -2.91 -0.02 6.18 16 28 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 4.05 6.07 -2.39 -0.01 4.03 16 30 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.27 14.32 8.31 -92.72 -0.77 13.55 16 32 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -65.01 276.96 6.24 -58.77 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.10 Total: 9.74 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 2.97 Total: -52.88 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.24 Total: -51.25 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.09 Total: -10.41 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.01 6.24 -58.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260763.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.839 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds