Wall clock time and date at job start Mon Mar 30 2020 03:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37865 * 120.01903 * 2 1 4 4 C 1.38718 * 120.68823 * 179.97438 * 3 2 1 5 5 C 1.37759 * 120.27874 * 0.02562 * 4 3 2 6 6 C 1.39384 * 119.59801 * 0.02562 * 5 4 3 7 7 C 1.46792 * 134.34382 * 179.97438 * 6 5 4 8 8 C 1.50696 * 126.90631 * 359.97438 * 7 6 5 9 9 H 1.08999 * 109.47709 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.47321 * 119.99916 * 8 7 6 11 11 C 1.50699 * 109.46952 * 239.99758 * 8 7 6 12 12 H 1.07998 * 120.00133 * 359.97438 * 11 8 7 13 13 C 1.37881 * 120.00141 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99762 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 119.99994 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47363 * 59.99182 * 15 13 11 17 17 H 1.48500 * 109.47414 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46930 * 299.99344 * 15 13 11 19 19 C 1.33994 * 106.18163 * 179.97438 * 7 6 5 20 20 O 1.34445 * 110.16225 * 0.02562 * 19 7 6 21 21 C 1.34841 * 110.89635 * 359.72652 * 20 19 7 22 22 H 1.09002 * 109.47152 * 89.99955 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00055 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00036 * 1 2 3 25 25 H 1.07995 * 119.65552 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.86344 * 179.97438 * 4 3 2 27 27 H 1.08000 * 120.20296 * 179.97438 * 5 4 3 28 28 H 1.08994 * 109.47026 * 179.97438 * 10 8 7 29 29 H 1.09002 * 109.46851 * 299.99989 * 10 8 7 30 30 H 1.09002 * 109.47230 * 59.99685 * 10 8 7 31 31 H 0.97002 * 119.99611 * 179.97438 * 14 13 11 32 32 H 1.07995 * 124.91547 * 179.97438 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1937 0.0000 4 6 3.5838 1.2099 0.0005 5 6 4.2923 0.0284 0.0005 6 6 3.6069 -1.1852 -0.0005 7 6 4.0165 -2.5949 -0.0013 8 6 5.4261 -3.1276 -0.0017 9 1 6.1294 -2.2949 -0.0017 10 6 5.6483 -3.9833 1.2471 11 6 5.6447 -3.9691 -1.2326 12 1 4.8430 -4.1049 -1.9433 13 6 6.8680 -4.5666 -1.4510 14 7 7.8442 -4.4016 -0.5853 15 14 7.1392 -5.6090 -2.9771 16 1 6.9242 -4.7780 -4.1890 17 1 8.5282 -6.1342 -2.9776 18 1 6.1807 -6.7433 -2.9784 19 6 2.8849 -3.3125 -0.0017 20 8 1.8176 -2.4949 -0.0017 21 6 2.2019 -1.2024 0.0046 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6515 2.1259 -0.0004 26 1 4.1106 2.1527 0.0001 27 1 5.3722 0.0425 0.0005 28 1 6.6677 -4.3690 1.2465 29 1 5.4902 -3.3746 2.1374 30 1 4.9451 -4.8162 1.2467 31 1 8.7047 -4.8223 -0.7388 32 1 2.8372 -4.3914 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261265717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:06 Heat of formation + Delta-G solvation = -5.248240 kcal Electronic energy + Delta-G solvation = -15468.020150 eV Core-core repulsion = 12972.669047 eV Total energy + Delta-G solvation = -2495.351103 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.25426 -38.84354 -36.86997 -34.35064 -33.01055 -31.19932 -29.57689 -27.71503 -27.23862 -24.23790 -23.29673 -22.89822 -20.13301 -18.55092 -17.89128 -17.52882 -16.93857 -16.55603 -16.34454 -15.06882 -14.76493 -14.64616 -14.30055 -14.23576 -13.62851 -13.40101 -13.13372 -12.93896 -12.83847 -12.70448 -12.59530 -12.30925 -12.12602 -11.88752 -11.46413 -11.15446 -10.50664 -10.41596 -9.45392 -8.82390 -8.11952 -6.27211 0.05756 0.47052 1.40635 1.42269 1.49616 1.62492 2.00557 2.42127 2.81147 3.14895 3.70804 3.76303 4.06926 4.19947 4.37894 4.50628 4.59991 4.71894 4.75713 4.82620 4.90225 4.93624 5.07080 5.19547 5.24531 5.43296 5.49071 5.54769 5.57562 5.63905 5.80789 5.93203 6.03885 6.27089 6.40209 6.80281 7.41050 8.92290 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.036764 B = 0.006972 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.434613 B = 4015.309380 C = 4181.266887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.086 4.086 3 C -0.097 4.097 4 C -0.129 4.129 5 C -0.100 4.100 6 C -0.153 4.153 7 C -0.155 4.155 8 C 0.106 3.894 9 H 0.000 1.000 10 C -0.121 4.121 11 C -0.527 4.527 12 H 0.050 0.950 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.956 3.044 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.018 4.018 20 O -0.204 6.204 21 C 0.023 3.977 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.174 0.826 26 H 0.159 0.841 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.780 9.117 1.532 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.086 4.086 3 C -0.114 4.114 4 C -0.147 4.147 5 C -0.118 4.118 6 C -0.154 4.154 7 C -0.157 4.157 8 C 0.087 3.913 9 H 0.018 0.982 10 C -0.178 4.178 11 C -0.565 4.565 12 H 0.069 0.931 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.782 3.218 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.082 4.082 20 O -0.106 6.106 21 C -0.024 4.024 22 H 0.097 0.903 23 H 0.116 0.884 24 H 0.077 0.923 25 H 0.192 0.808 26 H 0.177 0.823 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.869 8.980 1.568 14.966 hybrid contribution 1.042 -0.968 -0.718 1.593 sum -10.827 8.012 0.850 13.496 Atomic orbital electron populations 1.20754 0.88269 1.03830 1.03268 1.19255 0.97750 0.87777 1.03865 1.21239 0.93816 0.97163 0.99210 1.21333 0.94706 0.97603 1.01076 1.20766 0.99954 0.91156 0.99943 1.20356 0.94152 0.94632 1.06289 1.21843 0.97896 0.91097 1.04819 1.17070 0.85906 0.93675 0.94601 0.98196 1.21635 1.02351 0.98423 0.95424 1.21373 0.97891 1.30643 1.06593 0.93129 1.25721 0.95629 0.97563 0.99347 1.70003 1.03604 1.45057 1.36839 0.85639 0.77358 0.79126 0.79718 1.20173 1.20625 1.19215 1.23847 0.82900 0.96312 1.05100 1.83904 1.34963 1.14459 1.77287 1.19954 0.92711 0.84718 1.04993 0.90295 0.88373 0.92331 0.80823 0.82349 0.86785 0.91870 0.96062 0.94445 0.92750 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 10.02 71.24 0.71 -1.45 16 2 C -0.09 -2.47 5.89 -19.80 -0.12 -2.59 16 3 C -0.10 -2.33 9.66 22.30 0.22 -2.11 16 4 C -0.13 -3.55 10.03 22.27 0.22 -3.32 16 5 C -0.10 -3.72 10.10 22.43 0.23 -3.50 16 6 C -0.15 -6.55 6.38 -20.21 -0.13 -6.68 16 7 C -0.16 -7.28 5.02 -18.59 -0.09 -7.37 16 8 C 0.11 5.62 2.71 -12.29 -0.03 5.58 16 9 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 10 C -0.12 -6.02 8.86 71.98 0.64 -5.38 16 11 C -0.53 -29.59 8.41 25.60 0.22 -29.38 16 12 H 0.05 2.82 7.72 -2.91 -0.02 2.80 16 13 C 0.02 0.91 5.30 84.66 0.45 1.36 16 14 N -0.92 -52.98 11.32 21.45 0.24 -52.73 16 15 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 C -0.02 -0.75 11.43 66.85 0.76 0.01 16 20 O -0.20 -7.99 10.58 -9.21 -0.10 -8.09 16 21 C 0.02 0.89 7.07 22.98 0.16 1.05 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 24 H 0.06 1.30 8.09 -2.38 -0.02 1.28 16 25 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 26 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 29 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.22 7.94 8.06 -2.91 -0.02 7.92 16 Total: -1.00 -65.48 276.60 6.51 -58.97 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.10 Total: 9.83 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 3.24 Total: -53.77 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.24 Total: -52.73 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.10 Total: -8.09 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.48 6.51 -58.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.722 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds