Wall clock time and date at job start Mon Mar 30 2020 03:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34455 * 124.91737 * 2 1 4 4 C 1.34811 * 110.88735 * 179.97438 * 3 2 1 5 5 C 1.38945 * 133.49988 * 179.97438 * 4 3 2 6 6 C 1.37843 * 119.81971 * 180.02562 * 5 4 3 7 7 C 1.38746 * 120.68341 * 0.03337 * 6 5 4 8 8 C 1.50704 * 119.78696 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47285 * 269.98093 * 8 7 6 10 10 H 1.08003 * 120.00222 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99998 * 179.97438 * 9 8 7 12 12 N 1.31505 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99736 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47442 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47070 * 120.00544 * 13 11 9 16 16 H 1.48507 * 109.47114 * 240.00376 * 13 11 9 17 17 C 1.36731 * 120.42263 * 359.97438 * 7 6 5 18 18 C 1.39410 * 119.71327 * 0.02562 * 17 7 6 19 19 C 1.33996 * 124.92588 * 179.97438 * 2 1 3 20 20 C 1.50693 * 126.90760 * 0.02562 * 19 2 1 21 21 H 1.08996 * 109.47711 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46892 * 120.02611 * 1 2 3 23 23 H 1.09009 * 109.46951 * 240.02389 * 1 2 3 24 24 H 1.08003 * 120.08713 * 0.02562 * 5 4 3 25 25 H 1.08003 * 119.65765 * 180.02562 * 6 5 4 26 26 H 1.08997 * 109.47251 * 29.98318 * 8 7 6 27 27 H 1.08996 * 109.46977 * 149.98003 * 8 7 6 28 28 H 0.96999 * 119.99814 * 179.97438 * 12 11 9 29 29 H 1.08002 * 120.14449 * 180.02562 * 17 7 6 30 30 H 1.09006 * 109.46941 * 90.01975 * 20 19 2 31 31 H 1.08993 * 109.47410 * 210.02016 * 20 19 2 32 32 H 1.08998 * 109.47153 * 330.02696 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1025 0.0000 4 6 3.5845 0.7757 0.0006 5 6 4.7568 1.5216 0.0004 6 6 5.9771 0.8806 0.0006 7 6 6.0491 -0.5049 0.0003 8 6 7.3941 -1.1848 0.0011 9 6 7.8433 -1.4115 -1.4194 10 1 7.2176 -1.0946 -2.2407 11 6 9.0535 -2.0225 -1.6705 12 7 9.8156 -2.4079 -0.6705 13 14 9.6105 -2.3029 -3.4313 14 1 8.5805 -1.7815 -4.3654 15 1 10.8938 -1.5925 -3.6636 16 1 9.8005 -3.7571 -3.6649 17 6 4.9075 -1.2575 0.0004 18 6 3.6642 -0.6270 0.0001 19 6 2.2742 -1.0986 0.0005 20 6 1.8043 -2.5304 0.0006 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3633 -0.5142 -0.8897 23 1 -0.3633 -0.5135 0.8903 24 1 4.7118 2.6007 0.0000 25 1 6.8866 1.4630 0.0008 26 1 8.1195 -0.5544 0.5154 27 1 7.3166 -2.1429 0.5150 28 1 10.6668 -2.8381 -0.8472 29 1 4.9688 -2.3358 0.0006 30 1 1.6918 -2.8760 -1.0271 31 1 2.5362 -3.1530 0.5151 32 1 0.8450 -2.5980 0.5137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:04 Heat of formation + Delta-G solvation = 4.427470 kcal Electronic energy + Delta-G solvation = -15116.059533 eV Core-core repulsion = 12621.128001 eV Total energy + Delta-G solvation = -2494.931533 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.02685 -37.64420 -34.11685 -33.26610 -31.18647 -30.54825 -28.70319 -26.80801 -25.74852 -23.38267 -21.54034 -20.46680 -19.57856 -16.48402 -16.35854 -15.98774 -15.91936 -14.78577 -14.24844 -13.61512 -13.35123 -13.24838 -12.94182 -12.88106 -12.66529 -12.45470 -12.15393 -11.75802 -11.51659 -11.26079 -11.07329 -10.69823 -10.57466 -10.21052 -9.60321 -9.40801 -9.35012 -8.43773 -7.68633 -7.53781 -6.05244 -4.09097 1.42604 2.06350 2.67977 3.08312 3.28967 3.36689 3.42117 4.33157 4.50674 4.70933 5.05700 5.09896 5.23810 5.29352 5.35758 5.45268 5.62791 5.76185 5.79413 5.88162 5.97514 6.05339 6.07889 6.27733 6.47612 6.76783 6.87634 7.04897 7.12229 7.28273 7.51737 7.72731 7.81376 7.90857 8.30823 8.96498 9.55018 11.04549 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.037847 B = 0.006006 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.637329 B = 4660.938459 C = 4932.389413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.008 3.992 3 O -0.200 6.200 4 C 0.027 3.973 5 C -0.116 4.116 6 C -0.087 4.087 7 C -0.050 4.050 8 C 0.050 3.950 9 C -0.512 4.512 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.080 4.080 18 C -0.124 4.124 19 C -0.177 4.177 20 C -0.078 4.078 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.132 0.868 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.560 3.445 2.027 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.039 4.039 3 O -0.103 6.103 4 C -0.019 4.019 5 C -0.135 4.135 6 C -0.105 4.105 7 C -0.050 4.050 8 C 0.014 3.986 9 C -0.550 4.550 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.098 4.098 18 C -0.125 4.125 19 C -0.178 4.178 20 C -0.135 4.135 21 H 0.093 0.907 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.488 3.626 2.066 16.040 hybrid contribution 0.529 -0.254 -1.002 1.161 sum -14.959 3.372 1.063 15.371 Atomic orbital electron populations 1.20303 0.85508 1.03726 1.03291 1.21889 0.93462 0.83799 1.04769 1.83852 1.15404 1.33570 1.77473 1.19463 0.82588 0.93671 1.06142 1.19834 0.88188 0.98908 1.06530 1.20961 0.95927 0.94767 0.98876 1.20320 0.97528 0.93146 0.94034 1.18339 0.86935 0.95560 0.97806 1.21118 1.03536 1.38835 0.91527 0.92412 1.25004 0.96532 0.95512 0.97232 1.69962 1.12001 1.40719 1.30625 0.86491 0.78623 0.77895 0.84792 1.19674 1.20909 1.20922 1.20172 0.89352 0.99930 1.00367 1.19795 0.93472 0.92904 1.06347 1.20824 0.91300 0.95933 1.09764 1.20112 1.00681 0.90729 1.01943 0.90726 0.89844 0.89852 0.86017 0.84998 0.95138 0.95243 0.92878 0.86043 0.91515 0.91332 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 9.86 36.01 0.35 -0.32 16 2 C 0.01 0.12 7.23 -35.80 -0.26 -0.14 16 3 O -0.20 -3.50 10.58 3.89 0.04 -3.46 16 4 C 0.03 0.52 7.42 -38.47 -0.29 0.24 16 5 C -0.12 -2.10 10.07 -39.46 -0.40 -2.50 16 6 C -0.09 -1.73 9.66 -39.54 -0.38 -2.11 16 7 C -0.05 -1.11 5.04 -104.98 -0.53 -1.64 16 8 C 0.05 1.30 5.09 -29.03 -0.15 1.15 16 9 C -0.51 -14.36 9.09 -34.44 -0.31 -14.67 16 10 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C -0.08 -1.67 9.68 -39.69 -0.38 -2.06 16 18 C -0.12 -2.42 6.38 -105.16 -0.67 -3.09 16 19 C -0.18 -2.85 6.35 -102.67 -0.65 -3.50 16 20 C -0.08 -0.97 10.18 36.00 0.37 -0.60 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 25 H 0.13 2.42 8.06 -52.48 -0.42 1.99 16 26 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.61 7.85 -51.93 -0.41 0.20 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -31.17 281.18 -7.57 -38.74 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.17 Total: -2.77 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -3.40 Total: -27.69 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.17 -7.57 -38.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.168 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds