Wall clock time and date at job start Mon Mar 30 2020 03:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34455 * 124.91737 * 2 1 4 4 C 1.34811 * 110.88735 * 179.97438 * 3 2 1 5 5 C 1.38945 * 133.49988 * 179.97438 * 4 3 2 6 6 C 1.37843 * 119.81971 * 180.02562 * 5 4 3 7 7 C 1.38746 * 120.68341 * 0.03337 * 6 5 4 8 8 C 1.50704 * 119.78696 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47285 * 269.98093 * 8 7 6 10 10 H 1.08003 * 120.00222 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99998 * 179.97438 * 9 8 7 12 12 N 1.31505 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99736 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47442 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47070 * 120.00544 * 13 11 9 16 16 H 1.48507 * 109.47114 * 240.00376 * 13 11 9 17 17 C 1.36731 * 120.42263 * 359.97438 * 7 6 5 18 18 C 1.39410 * 119.71327 * 0.02562 * 17 7 6 19 19 C 1.33996 * 124.92588 * 179.97438 * 2 1 3 20 20 C 1.50693 * 126.90760 * 0.02562 * 19 2 1 21 21 H 1.08996 * 109.47711 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46892 * 120.02611 * 1 2 3 23 23 H 1.09009 * 109.46951 * 240.02389 * 1 2 3 24 24 H 1.08003 * 120.08713 * 0.02562 * 5 4 3 25 25 H 1.08003 * 119.65765 * 180.02562 * 6 5 4 26 26 H 1.08997 * 109.47251 * 29.98318 * 8 7 6 27 27 H 1.08996 * 109.46977 * 149.98003 * 8 7 6 28 28 H 0.96999 * 119.99814 * 179.97438 * 12 11 9 29 29 H 1.08002 * 120.14449 * 180.02562 * 17 7 6 30 30 H 1.09006 * 109.46941 * 90.01975 * 20 19 2 31 31 H 1.08993 * 109.47410 * 210.02016 * 20 19 2 32 32 H 1.08998 * 109.47153 * 330.02696 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2766 1.1025 0.0000 4 6 3.5845 0.7757 0.0006 5 6 4.7568 1.5216 0.0004 6 6 5.9771 0.8806 0.0006 7 6 6.0491 -0.5049 0.0003 8 6 7.3941 -1.1848 0.0011 9 6 7.8433 -1.4115 -1.4194 10 1 7.2176 -1.0946 -2.2407 11 6 9.0535 -2.0225 -1.6705 12 7 9.8156 -2.4079 -0.6705 13 14 9.6105 -2.3029 -3.4313 14 1 8.5805 -1.7815 -4.3654 15 1 10.8938 -1.5925 -3.6636 16 1 9.8005 -3.7571 -3.6649 17 6 4.9075 -1.2575 0.0004 18 6 3.6642 -0.6270 0.0001 19 6 2.2742 -1.0986 0.0005 20 6 1.8043 -2.5304 0.0006 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3633 -0.5142 -0.8897 23 1 -0.3633 -0.5135 0.8903 24 1 4.7118 2.6007 0.0000 25 1 6.8866 1.4630 0.0008 26 1 8.1195 -0.5544 0.5154 27 1 7.3166 -2.1429 0.5150 28 1 10.6668 -2.8381 -0.8472 29 1 4.9688 -2.3358 0.0006 30 1 1.6918 -2.8760 -1.0271 31 1 2.5362 -3.1530 0.5151 32 1 0.8450 -2.5980 0.5137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261284070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:04 Heat of formation + Delta-G solvation = -12.309638 kcal Electronic energy + Delta-G solvation = -15116.785309 eV Core-core repulsion = 12621.128001 eV Total energy + Delta-G solvation = -2495.657308 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.37388 -39.20644 -35.35034 -35.26100 -32.84529 -31.91325 -29.93600 -28.56403 -26.93990 -25.31886 -23.00500 -22.05270 -20.89538 -18.53475 -17.88799 -17.37456 -17.25673 -16.59046 -15.90138 -14.99858 -14.69696 -14.53404 -14.27389 -14.13939 -13.78113 -13.72055 -13.46663 -13.24756 -13.04093 -12.86007 -12.66300 -12.57715 -12.42372 -11.73313 -11.53402 -11.47072 -10.69243 -10.62056 -9.28845 -8.89823 -8.21499 -6.34931 0.02268 0.48639 1.38366 1.38994 1.39561 1.52923 1.81366 2.38480 2.84187 3.09195 3.50959 3.73657 3.98760 4.15494 4.24891 4.41343 4.50858 4.53301 4.70925 4.73263 4.85175 4.87152 4.95493 5.06133 5.13666 5.28277 5.29959 5.33542 5.41603 5.67117 5.72769 5.79144 5.97571 6.14995 6.29842 6.77173 7.33767 8.87929 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.037847 B = 0.006006 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.637329 B = 4660.938459 C = 4932.389413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.020 3.980 3 O -0.204 6.204 4 C 0.012 3.988 5 C -0.102 4.102 6 C -0.101 4.101 7 C -0.074 4.074 8 C 0.061 3.939 9 C -0.530 4.530 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.275 1.275 17 C -0.094 4.094 18 C -0.140 4.140 19 C -0.202 4.202 20 C -0.075 4.075 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.157 0.843 25 H 0.140 0.860 26 H 0.011 0.989 27 H 0.004 0.996 28 H 0.266 0.734 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.015 4.067 1.083 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.027 4.027 3 O -0.107 6.107 4 C -0.034 4.034 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.074 4.074 8 C 0.024 3.976 9 C -0.567 4.567 10 H 0.070 0.930 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.201 1.201 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.203 4.203 20 C -0.132 4.132 21 H 0.106 0.894 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.174 0.826 25 H 0.158 0.842 26 H 0.029 0.971 27 H 0.022 0.978 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.956 4.251 1.127 18.487 hybrid contribution 1.148 -0.422 -0.655 1.388 sum -16.808 3.829 0.472 17.245 Atomic orbital electron populations 1.20616 0.81160 1.05404 1.05514 1.22957 0.95582 0.82511 1.01632 1.83881 1.14692 1.34820 1.77312 1.19713 0.83674 0.93696 1.06315 1.20091 0.87150 1.00521 1.04206 1.21000 0.97286 0.93741 0.99883 1.20071 0.96049 0.94456 0.96808 1.18076 0.88821 0.94261 0.96469 1.21384 1.03901 1.39117 0.92339 0.93021 1.25891 0.96488 0.94991 1.01746 1.70075 1.12505 1.41317 1.32950 0.85398 0.78288 0.78098 0.79274 1.19218 1.19915 1.20081 1.20104 0.90041 0.99618 1.01449 1.20155 0.94478 0.93701 1.05738 1.21244 0.89639 0.98231 1.11187 1.20193 1.01912 0.88290 1.02784 0.89397 0.87601 0.87322 0.82580 0.84189 0.97054 0.97796 0.92474 0.86772 0.90773 0.92393 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.86 71.24 0.70 -0.31 16 2 C 0.02 0.54 7.23 24.72 0.18 0.72 16 3 O -0.20 -6.68 10.58 -9.00 -0.10 -6.77 16 4 C 0.01 0.46 7.42 22.99 0.17 0.63 16 5 C -0.10 -3.58 10.07 22.35 0.23 -3.36 16 6 C -0.10 -4.08 9.66 22.30 0.22 -3.86 16 7 C -0.07 -3.43 5.04 -20.09 -0.10 -3.53 16 8 C 0.06 3.31 5.09 29.10 0.15 3.46 16 9 C -0.53 -30.75 9.09 25.60 0.23 -30.52 16 10 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 11 C 0.01 0.41 5.46 84.66 0.46 0.87 16 12 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 13 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 C -0.09 -4.10 9.68 22.20 0.21 -3.88 16 18 C -0.14 -5.44 6.38 -20.21 -0.13 -5.57 16 19 C -0.20 -6.17 6.35 -18.60 -0.12 -6.29 16 20 C -0.08 -1.72 10.18 71.23 0.73 -0.99 16 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 25 H 0.14 5.25 8.06 -2.91 -0.02 5.23 16 26 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 27 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 28 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 1.51 7.85 -2.39 -0.02 1.49 16 Total: -1.00 -69.12 281.18 6.25 -62.88 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.10 Total: 5.62 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 2.93 Total: -52.61 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.28 Total: -55.80 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.10 Total: -6.77 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.12 6.25 -62.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.568 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds