Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38737 * 119.79330 * 2 1 4 4 C 1.37849 * 120.68433 * 180.02562 * 3 2 1 5 5 C 1.38947 * 119.81775 * 359.96240 * 4 3 2 6 6 O 1.34804 * 133.49077 * 180.02562 * 5 4 3 7 7 C 1.34451 * 110.88681 * 179.97438 * 6 5 4 8 8 C 1.33994 * 110.15467 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.90706 * 179.73378 * 8 7 6 10 10 H 1.09006 * 109.46909 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.46889 * 60.02947 * 9 8 7 12 12 C 1.50690 * 109.47348 * 300.02533 * 9 8 7 13 13 H 1.08003 * 120.00229 * 0.02562 * 12 9 8 14 14 C 1.37882 * 120.00163 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00037 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00001 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47300 * 89.99949 * 16 14 12 18 18 H 1.48501 * 109.47314 * 209.99845 * 16 14 12 19 19 H 1.48497 * 109.47158 * 329.99857 * 16 14 12 20 20 C 1.40492 * 119.22262 * 0.03410 * 5 4 3 21 21 C 1.36747 * 119.78765 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47204 * 269.98270 * 1 2 3 23 23 H 1.08997 * 109.46803 * 29.97968 * 1 2 3 24 24 H 1.08998 * 109.46984 * 149.97683 * 1 2 3 25 25 H 1.07999 * 119.66030 * 0.04231 * 3 2 1 26 26 H 1.07996 * 120.09065 * 179.97438 * 4 3 2 27 27 H 1.07995 * 124.92576 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47478 * 60.00003 * 11 9 8 29 29 H 1.09006 * 109.47187 * 179.97438 * 11 9 8 30 30 H 1.08997 * 109.47610 * 299.99707 * 11 9 8 31 31 H 0.97001 * 120.00398 * 179.97438 * 15 14 12 32 32 H 1.08003 * 120.13858 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2040 0.0000 4 6 3.5747 1.2254 -0.0005 5 6 4.2843 0.0308 -0.0003 6 8 5.5989 -0.2674 -0.0002 7 6 5.7885 -1.5985 0.0006 8 6 4.6082 -2.2329 0.0017 9 6 4.3816 -3.7228 -0.0027 10 1 3.3110 -3.9275 -0.0009 11 6 5.0208 -4.3395 1.2430 12 6 5.0055 -4.3222 -1.2365 13 1 5.5156 -3.6878 -1.9464 14 6 4.9253 -5.6805 -1.4593 15 7 4.3047 -6.4531 -0.5948 16 14 5.6993 -6.4235 -2.9884 17 1 7.1042 -6.8057 -2.6963 18 1 4.9330 -7.6287 -3.3955 19 1 5.6761 -5.4270 -4.0891 20 6 3.5804 -1.1851 -0.0002 21 6 2.1864 -1.1868 -0.0005 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6475 2.1341 0.0007 26 1 4.1016 2.1682 -0.0009 27 1 6.7522 -2.0858 0.0005 28 1 4.5694 -3.9060 2.1355 29 1 4.8565 -5.4171 1.2401 30 1 6.0913 -4.1349 1.2414 31 1 4.2479 -7.4087 -0.7516 32 1 1.6452 -2.1214 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286517.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = 9.816912 kcal Electronic energy + Delta-G solvation = -15420.891647 eV Core-core repulsion = 12926.193818 eV Total energy + Delta-G solvation = -2494.697829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.76720 -37.79535 -34.93088 -32.13073 -31.79866 -30.08630 -27.91004 -26.43936 -25.14782 -22.63684 -22.04232 -21.00621 -18.91229 -16.66028 -16.51426 -15.76611 -15.36113 -14.94197 -14.51327 -13.67168 -13.50531 -13.40833 -12.84612 -12.75181 -12.05439 -11.89804 -11.61810 -11.31655 -11.28979 -10.97132 -10.91961 -10.63744 -10.35986 -10.09561 -9.63314 -9.36771 -8.86049 -8.40229 -7.98174 -7.38298 -6.03877 -4.10921 1.42695 1.76963 3.17869 3.28284 3.35163 3.39776 3.45398 4.13725 4.41373 5.00957 5.09720 5.18000 5.27777 5.48150 5.64298 5.68437 5.75653 5.89536 6.03304 6.17021 6.28530 6.44090 6.60107 6.80385 6.84264 6.92516 6.93706 7.15592 7.18324 7.35210 7.63141 7.79969 7.96686 8.07027 8.36620 8.91545 9.54058 11.01769 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.030331 B = 0.007349 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.923642 B = 3809.096512 C = 4150.689545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.112 4.112 5 C 0.040 3.960 6 O -0.205 6.205 7 C -0.027 4.027 8 C -0.117 4.117 9 C 0.102 3.898 10 H 0.035 0.965 11 C -0.132 4.132 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.119 4.119 21 C -0.061 4.061 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.203 0.797 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 11.234 2.043 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.119 4.119 3 C -0.122 4.122 4 C -0.131 4.131 5 C -0.008 4.008 6 O -0.108 6.108 7 C -0.090 4.090 8 C -0.118 4.118 9 C 0.083 3.917 10 H 0.054 0.946 11 C -0.190 4.190 12 C -0.548 4.548 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.120 4.120 21 C -0.079 4.079 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.220 0.780 28 H 0.028 0.972 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.468 11.230 2.068 11.934 hybrid contribution 0.470 -0.650 -0.872 1.185 sum -2.998 10.580 1.196 11.061 Atomic orbital electron populations 1.20693 0.91225 1.02438 1.01900 1.19411 0.95984 0.92760 1.03773 1.20629 0.92478 0.97497 1.01594 1.19760 0.93042 0.94296 1.05972 1.19664 0.82185 0.95464 1.03482 1.83927 1.23790 1.25879 1.77158 1.23650 1.00545 0.78252 1.06578 1.22010 0.90012 0.98008 1.01812 1.17304 0.97501 0.82134 0.94747 0.94646 1.21798 0.97835 1.04092 0.95232 1.21151 1.35606 0.92317 1.05720 0.92515 1.24954 0.95240 0.97138 0.96563 1.69879 1.42672 1.04932 1.35342 0.86572 0.79258 0.78744 0.83353 1.20602 1.21169 1.19901 1.20128 0.94475 0.93045 1.04371 1.20229 0.91924 0.97934 0.97805 0.91650 0.91963 0.91630 0.85624 0.85821 0.78016 0.97191 0.89495 0.95407 0.92887 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.00 36.01 0.36 -0.86 16 2 C -0.12 -1.81 5.85 -104.98 -0.61 -2.42 16 3 C -0.10 -1.46 9.66 -39.54 -0.38 -1.84 16 4 C -0.11 -1.75 10.07 -39.46 -0.40 -2.15 16 5 C 0.04 0.77 7.42 -38.47 -0.29 0.48 16 6 O -0.21 -4.05 10.58 3.92 0.04 -4.01 16 7 C -0.03 -0.56 11.43 29.24 0.33 -0.22 16 8 C -0.12 -2.65 5.02 -102.66 -0.52 -3.16 16 9 C 0.10 2.56 2.71 -92.93 -0.25 2.31 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.13 -3.17 8.85 37.15 0.33 -2.84 16 12 C -0.51 -13.87 8.41 -34.44 -0.29 -14.16 16 13 H 0.06 1.54 7.72 -52.48 -0.41 1.14 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.12 -2.49 6.38 -105.16 -0.67 -3.16 16 21 C -0.06 -1.12 9.68 -39.69 -0.38 -1.51 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.06 0.74 8.08 -51.93 -0.42 0.33 16 25 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.20 3.64 8.06 -52.49 -0.42 3.22 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 30 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 276.49 15.07 4.17 4.17 Total: -1.00 -29.27 276.49 -7.12 -36.39 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.07 Total: -0.31 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -2.86 Total: -27.93 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.39 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.27 -7.12 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286517.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.203 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds