Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38737 * 119.79330 * 2 1 4 4 C 1.37849 * 120.68433 * 180.02562 * 3 2 1 5 5 C 1.38947 * 119.81775 * 359.96240 * 4 3 2 6 6 O 1.34804 * 133.49077 * 180.02562 * 5 4 3 7 7 C 1.34451 * 110.88681 * 179.97438 * 6 5 4 8 8 C 1.33994 * 110.15467 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.90706 * 179.73378 * 8 7 6 10 10 H 1.09006 * 109.46909 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.46889 * 60.02947 * 9 8 7 12 12 C 1.50690 * 109.47348 * 300.02533 * 9 8 7 13 13 H 1.08003 * 120.00229 * 0.02562 * 12 9 8 14 14 C 1.37882 * 120.00163 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00037 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00001 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47300 * 89.99949 * 16 14 12 18 18 H 1.48501 * 109.47314 * 209.99845 * 16 14 12 19 19 H 1.48497 * 109.47158 * 329.99857 * 16 14 12 20 20 C 1.40492 * 119.22262 * 0.03410 * 5 4 3 21 21 C 1.36747 * 119.78765 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47204 * 269.98270 * 1 2 3 23 23 H 1.08997 * 109.46803 * 29.97968 * 1 2 3 24 24 H 1.08998 * 109.46984 * 149.97683 * 1 2 3 25 25 H 1.07999 * 119.66030 * 0.04231 * 3 2 1 26 26 H 1.07996 * 120.09065 * 179.97438 * 4 3 2 27 27 H 1.07995 * 124.92576 * 179.97438 * 7 6 5 28 28 H 1.09000 * 109.47478 * 60.00003 * 11 9 8 29 29 H 1.09006 * 109.47187 * 179.97438 * 11 9 8 30 30 H 1.08997 * 109.47610 * 299.99707 * 11 9 8 31 31 H 0.97001 * 120.00398 * 179.97438 * 15 14 12 32 32 H 1.08003 * 120.13858 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2040 0.0000 4 6 3.5747 1.2254 -0.0005 5 6 4.2843 0.0308 -0.0003 6 8 5.5989 -0.2674 -0.0002 7 6 5.7885 -1.5985 0.0006 8 6 4.6082 -2.2329 0.0017 9 6 4.3816 -3.7228 -0.0027 10 1 3.3110 -3.9275 -0.0009 11 6 5.0208 -4.3395 1.2430 12 6 5.0055 -4.3222 -1.2365 13 1 5.5156 -3.6878 -1.9464 14 6 4.9253 -5.6805 -1.4593 15 7 4.3047 -6.4531 -0.5948 16 14 5.6993 -6.4235 -2.9884 17 1 7.1042 -6.8057 -2.6963 18 1 4.9330 -7.6287 -3.3955 19 1 5.6761 -5.4270 -4.0891 20 6 3.5804 -1.1851 -0.0002 21 6 2.1864 -1.1868 -0.0005 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6475 2.1341 0.0007 26 1 4.1016 2.1682 -0.0009 27 1 6.7522 -2.0858 0.0005 28 1 4.5694 -3.9060 2.1355 29 1 4.8565 -5.4171 1.2401 30 1 6.0913 -4.1349 1.2414 31 1 4.2479 -7.4087 -0.7516 32 1 1.6452 -2.1214 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286517.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = -5.336758 kcal Electronic energy + Delta-G solvation = -15421.548759 eV Core-core repulsion = 12926.193818 eV Total energy + Delta-G solvation = -2495.354941 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.24278 -39.07860 -36.83173 -33.96873 -32.98916 -31.72368 -29.52023 -27.61274 -27.24193 -24.14497 -23.69081 -22.33586 -20.55501 -18.47475 -18.01435 -17.46046 -16.89893 -16.50546 -16.11300 -15.03684 -14.83322 -14.63927 -14.55725 -14.40956 -13.62594 -13.41778 -12.98003 -12.90964 -12.83946 -12.63840 -12.49249 -12.32529 -12.14274 -11.88516 -11.46009 -11.17704 -10.59402 -10.49423 -9.30293 -8.90935 -8.12436 -6.27635 0.07633 0.44427 1.40032 1.41005 1.51014 1.63380 2.01195 2.41895 2.79827 3.14483 3.67204 3.83068 4.01546 4.21722 4.41078 4.45157 4.64337 4.70014 4.75952 4.89188 4.92099 4.95530 5.13570 5.18362 5.21807 5.34340 5.42596 5.54802 5.62787 5.67563 5.81080 5.92605 6.03684 6.26871 6.40053 6.80165 7.40758 8.92074 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.030331 B = 0.007349 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.923642 B = 3809.096512 C = 4150.689545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C -0.091 4.091 4 C -0.107 4.107 5 C 0.017 3.983 6 O -0.205 6.205 7 C -0.017 4.017 8 C -0.157 4.157 9 C 0.107 3.893 10 H -0.001 1.001 11 C -0.121 4.121 12 C -0.526 4.526 13 H 0.050 0.950 14 C 0.016 3.984 15 N -0.916 5.916 16 Si 0.957 3.043 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.152 4.152 21 C -0.095 4.095 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.175 0.825 26 H 0.159 0.841 27 H 0.220 0.780 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 13.650 1.574 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.125 4.125 5 C -0.030 4.030 6 O -0.107 6.107 7 C -0.081 4.081 8 C -0.158 4.158 9 C 0.088 3.912 10 H 0.017 0.983 11 C -0.179 4.179 12 C -0.564 4.564 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.555 5.555 16 Si 0.782 3.218 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.153 4.153 21 C -0.113 4.113 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.079 0.921 25 H 0.193 0.807 26 H 0.176 0.824 27 H 0.236 0.764 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.895 13.657 1.605 14.292 hybrid contribution 0.478 -1.301 -0.699 1.552 sum -3.417 12.357 0.905 12.852 Atomic orbital electron populations 1.20794 0.88393 1.03730 1.03286 1.19898 0.98043 0.91960 1.00783 1.21223 0.92059 0.98776 0.98796 1.20319 0.93774 0.94246 1.04199 1.20174 0.81687 0.96257 1.04878 1.83909 1.24422 1.25121 1.77295 1.23854 1.00510 0.78672 1.05014 1.21847 0.92043 0.96992 1.04899 1.17063 0.95035 0.84489 0.94615 0.98306 1.21638 0.98443 1.02370 0.95420 1.21403 1.35826 0.92742 1.06458 0.93127 1.25723 0.95655 0.97502 0.99398 1.70006 1.43496 1.05162 1.36873 0.85574 0.78737 0.77788 0.79694 1.19536 1.20735 1.19786 1.20329 0.95443 0.93329 1.06213 1.20351 0.91413 0.99041 1.00538 0.90069 0.88982 0.92090 0.80732 0.82379 0.76355 0.96073 0.91873 0.94387 0.92750 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 10.00 71.24 0.71 -1.39 16 2 C -0.11 -3.01 5.85 -20.09 -0.12 -3.12 16 3 C -0.09 -2.18 9.66 22.30 0.22 -1.96 16 4 C -0.11 -3.00 10.07 22.35 0.23 -2.78 16 5 C 0.02 0.64 7.42 22.99 0.17 0.82 16 6 O -0.20 -8.02 10.58 -8.90 -0.09 -8.12 16 7 C -0.02 -0.71 11.43 66.85 0.76 0.06 16 8 C -0.16 -7.35 5.02 -18.59 -0.09 -7.44 16 9 C 0.11 5.65 2.71 -12.29 -0.03 5.62 16 10 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 11 C -0.12 -6.04 8.85 71.98 0.64 -5.40 16 12 C -0.53 -29.60 8.41 25.60 0.22 -29.39 16 13 H 0.05 2.83 7.72 -2.91 -0.02 2.81 16 14 C 0.02 0.90 5.30 84.66 0.45 1.35 16 15 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 16 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 C -0.15 -6.52 6.38 -20.21 -0.13 -6.64 16 21 C -0.10 -3.59 9.68 22.20 0.21 -3.38 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 23 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 24 H 0.06 1.28 8.08 -2.39 -0.02 1.27 16 25 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 26 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.22 7.93 8.06 -2.91 -0.02 7.91 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 3.44 6.07 -2.38 -0.01 3.42 16 30 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -65.60 276.49 6.51 -59.09 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.10 Total: 9.64 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 3.23 Total: -53.67 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.24 Total: -52.79 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.09 Total: -8.12 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -65.60 6.51 -59.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286517.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.754 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds