Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.45322 * 2 1 4 4 O 1.43109 * 109.49655 * 120.03335 * 2 1 3 5 5 C 1.43884 * 106.74300 * 101.46565 * 4 2 1 6 6 H 1.09004 * 113.28153 * 264.13969 * 5 4 2 7 7 C 1.54086 * 109.70135 * 136.44096 * 5 4 2 8 8 H 1.09006 * 109.95980 * 158.70107 * 7 5 4 9 9 O 1.42897 * 109.96057 * 37.46359 * 7 5 4 10 10 O 1.42970 * 106.98395 * 278.07858 * 7 5 4 11 11 C 1.42875 * 110.62950 * 341.51850 * 10 7 5 12 12 H 1.08998 * 109.71516 * 120.92850 * 11 10 7 13 13 C 1.50701 * 109.71893 * 241.53830 * 11 10 7 14 14 H 1.07998 * 119.99652 * 118.55154 * 13 11 10 15 15 C 1.37876 * 119.99906 * 298.54212 * 13 11 10 16 16 N 1.31507 * 120.00257 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99648 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.46871 * 60.00454 * 17 15 13 19 19 H 1.48505 * 109.46919 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46857 * 300.00252 * 17 15 13 21 21 C 1.53724 * 108.25276 * 1.21287 * 11 10 7 22 22 H 1.09000 * 112.66872 * 253.83266 * 21 11 10 23 23 O 1.43504 * 109.52992 * 127.60715 * 21 11 10 24 24 H 1.08998 * 109.47102 * 301.41806 * 1 2 3 25 25 H 1.08997 * 109.47431 * 61.42230 * 1 2 3 26 26 H 1.09004 * 109.46945 * 181.42304 * 1 2 3 27 27 H 1.09006 * 109.47316 * 178.57467 * 3 2 1 28 28 H 1.08993 * 109.47483 * 298.57634 * 3 2 1 29 29 H 1.09000 * 109.46745 * 58.58267 * 3 2 1 30 30 H 0.96702 * 113.99889 * 180.99529 * 9 7 5 31 31 H 0.97002 * 120.00328 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0395 1.4426 0.0000 4 8 2.0076 -0.6752 1.1679 5 6 2.4041 -1.9940 0.7512 6 1 1.6298 -2.7456 0.9054 7 6 3.7500 -2.3626 1.4046 8 1 3.8749 -3.4454 1.4142 9 8 3.8001 -1.8535 2.7389 10 8 4.7772 -1.7600 0.6135 11 6 4.2794 -1.4167 -0.6810 12 1 4.3913 -0.3450 -0.8457 13 6 5.0417 -2.1756 -1.7366 14 1 4.5232 -2.8656 -2.3857 15 6 6.4008 -1.9888 -1.8736 16 7 7.0322 -1.1488 -1.0829 17 14 7.3455 -2.9290 -3.1825 18 1 6.8005 -2.5942 -4.5226 19 1 8.7809 -2.5527 -3.1232 20 1 7.2062 -4.3876 -2.9416 21 6 2.7916 -1.7984 -0.7416 22 1 2.6101 -2.6870 -1.3462 23 8 2.0234 -0.6673 -1.1772 24 1 -0.3633 0.5357 0.8770 25 1 -0.3634 0.4916 -0.9024 26 1 -0.3633 -1.0274 0.0255 27 1 3.1292 1.4431 0.0256 28 1 1.6970 1.9489 -0.9024 29 1 1.6553 1.9636 0.8770 30 1 4.6296 -2.0394 3.1999 31 1 7.9883 -1.0171 -1.1795 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307558664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = -180.195444 kcal Electronic energy + Delta-G solvation = -17519.386106 eV Core-core repulsion = 14573.306709 eV Total energy + Delta-G solvation = -2946.079397 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62370 -37.31136 -35.21662 -34.32856 -32.49933 -32.25725 -28.73189 -27.82090 -27.06606 -24.25898 -21.24971 -20.97113 -20.77723 -17.37320 -16.94851 -16.55585 -15.79843 -15.03780 -14.71529 -14.51151 -14.15996 -13.75447 -13.00528 -12.81011 -12.61418 -12.23723 -11.97813 -11.89056 -11.76551 -11.63062 -11.13704 -11.00068 -10.92244 -10.76899 -10.35458 -10.28469 -9.87345 -9.31321 -8.81211 -8.63508 -8.09164 -6.08527 -4.25384 3.27146 3.32257 3.34017 3.68455 4.31994 4.37208 4.51750 4.85118 4.98787 5.16462 5.22480 5.32005 5.47616 5.64737 5.80175 5.88484 5.96431 5.99776 6.03444 6.13699 6.21102 6.32530 6.40519 6.61242 7.38442 7.71652 7.80728 8.06689 8.14757 8.40698 8.87853 9.46882 10.97817 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.032862 B = 0.009792 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.853834 B = 2858.833455 C = 3243.273909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.246 3.754 3 C -0.155 4.155 4 O -0.344 6.344 5 C 0.026 3.974 6 H 0.098 0.902 7 C 0.254 3.746 8 H 0.065 0.935 9 O -0.555 6.555 10 O -0.369 6.369 11 C 0.205 3.795 12 H 0.054 0.946 13 C -0.550 4.550 14 H 0.063 0.937 15 C 0.081 3.919 16 N -0.858 5.858 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.035 3.965 22 H 0.121 0.879 23 O -0.366 6.366 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.378 0.622 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 -0.434 2.957 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.169 3.831 3 C -0.212 4.212 4 O -0.265 6.265 5 C -0.032 4.032 6 H 0.116 0.884 7 C 0.156 3.844 8 H 0.082 0.918 9 O -0.362 6.362 10 O -0.290 6.290 11 C 0.150 3.850 12 H 0.072 0.928 13 C -0.588 4.588 14 H 0.081 0.919 15 C -0.126 4.126 16 N -0.493 5.493 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.023 4.023 22 H 0.138 0.862 23 O -0.287 6.287 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.359 0.078 2.912 9.802 hybrid contribution 0.890 -0.920 -0.599 1.413 sum -8.469 -0.842 2.313 8.820 Atomic orbital electron populations 1.22339 0.94508 1.02751 1.02713 1.23486 0.92243 0.92095 0.75270 1.22111 1.03399 0.93599 1.02099 1.88913 1.83321 1.24297 1.29942 1.25044 0.96520 0.86746 0.94921 0.88412 1.23267 0.86681 0.93823 0.80606 0.91805 1.86568 1.41177 1.83015 1.25415 1.88589 1.33637 1.79893 1.26848 1.20545 0.85767 0.97594 0.81097 0.92808 1.21235 0.93733 1.27424 1.16376 0.91863 1.25057 0.97761 0.94437 0.95328 1.70033 1.09377 1.33464 1.36449 0.86637 0.78834 0.80368 0.82007 1.19946 1.21060 1.20019 1.25200 0.95311 0.89607 0.92152 0.86164 1.88854 1.69308 1.41700 1.28839 0.91007 0.91040 0.92228 0.90824 0.90979 0.91407 0.77443 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.24 37.15 0.34 -2.03 16 2 C 0.25 4.55 1.54 -26.74 -0.04 4.50 16 3 C -0.15 -2.65 9.19 37.16 0.34 -2.31 16 4 O -0.34 -7.09 9.97 -65.81 -0.66 -7.75 16 5 C 0.03 0.51 4.60 -24.86 -0.11 0.40 16 6 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 7 C 0.25 5.35 4.83 37.72 0.18 5.53 16 8 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 9 O -0.55 -11.00 13.07 -65.83 -0.86 -11.86 16 10 O -0.37 -9.67 10.32 -58.98 -0.61 -10.28 16 11 C 0.21 5.36 3.15 -27.51 -0.09 5.28 16 12 H 0.05 1.58 7.77 -51.93 -0.40 1.18 16 13 C -0.55 -15.20 8.77 -34.44 -0.30 -15.51 16 14 H 0.06 1.66 7.44 -52.49 -0.39 1.27 16 15 C 0.08 2.27 5.41 -17.82 -0.10 2.18 16 16 N -0.86 -25.32 12.91 55.43 0.72 -24.61 16 17 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.03 0.75 4.24 -25.05 -0.11 0.65 16 22 H 0.12 2.40 7.60 -51.93 -0.39 2.00 16 23 O -0.37 -7.67 10.37 -58.94 -0.61 -8.28 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.45 7.98 -51.93 -0.41 1.04 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.38 6.00 9.12 45.56 0.42 6.42 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 263.70 15.07 3.97 3.97 Total: -1.00 -32.45 263.70 -6.23 -38.68 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.28 Total: 5.46 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.12 Total: -1.31 kcal Atomic # 7 Polarization: -25.32 SS G_CDS: 0.72 Total: -24.61 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -2.74 Total: -38.17 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.45 -6.23 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307558664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.518 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds