Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.45322 * 2 1 4 4 O 1.43109 * 109.49655 * 120.03335 * 2 1 3 5 5 C 1.43884 * 106.74300 * 101.46565 * 4 2 1 6 6 H 1.09004 * 113.28153 * 264.13969 * 5 4 2 7 7 C 1.54086 * 109.70135 * 136.44096 * 5 4 2 8 8 H 1.09006 * 109.95980 * 158.70107 * 7 5 4 9 9 O 1.42897 * 109.96057 * 37.46359 * 7 5 4 10 10 O 1.42970 * 106.98395 * 278.07858 * 7 5 4 11 11 C 1.42875 * 110.62950 * 341.51850 * 10 7 5 12 12 H 1.08998 * 109.71516 * 120.92850 * 11 10 7 13 13 C 1.50701 * 109.71893 * 241.53830 * 11 10 7 14 14 H 1.07998 * 119.99652 * 118.55154 * 13 11 10 15 15 C 1.37876 * 119.99906 * 298.54212 * 13 11 10 16 16 N 1.31507 * 120.00257 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99648 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.46871 * 60.00454 * 17 15 13 19 19 H 1.48505 * 109.46919 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46857 * 300.00252 * 17 15 13 21 21 C 1.53724 * 108.25276 * 1.21287 * 11 10 7 22 22 H 1.09000 * 112.66872 * 253.83266 * 21 11 10 23 23 O 1.43504 * 109.52992 * 127.60715 * 21 11 10 24 24 H 1.08998 * 109.47102 * 301.41806 * 1 2 3 25 25 H 1.08997 * 109.47431 * 61.42230 * 1 2 3 26 26 H 1.09004 * 109.46945 * 181.42304 * 1 2 3 27 27 H 1.09006 * 109.47316 * 178.57467 * 3 2 1 28 28 H 1.08993 * 109.47483 * 298.57634 * 3 2 1 29 29 H 1.09000 * 109.46745 * 58.58267 * 3 2 1 30 30 H 0.96702 * 113.99889 * 180.99529 * 9 7 5 31 31 H 0.97002 * 120.00328 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0395 1.4426 0.0000 4 8 2.0076 -0.6752 1.1679 5 6 2.4041 -1.9940 0.7512 6 1 1.6298 -2.7456 0.9054 7 6 3.7500 -2.3626 1.4046 8 1 3.8749 -3.4454 1.4142 9 8 3.8001 -1.8535 2.7389 10 8 4.7772 -1.7600 0.6135 11 6 4.2794 -1.4167 -0.6810 12 1 4.3913 -0.3450 -0.8457 13 6 5.0417 -2.1756 -1.7366 14 1 4.5232 -2.8656 -2.3857 15 6 6.4008 -1.9888 -1.8736 16 7 7.0322 -1.1488 -1.0829 17 14 7.3455 -2.9290 -3.1825 18 1 6.8005 -2.5942 -4.5226 19 1 8.7809 -2.5527 -3.1232 20 1 7.2062 -4.3876 -2.9416 21 6 2.7916 -1.7984 -0.7416 22 1 2.6101 -2.6870 -1.3462 23 8 2.0234 -0.6673 -1.1772 24 1 -0.3633 0.5357 0.8770 25 1 -0.3634 0.4916 -0.9024 26 1 -0.3633 -1.0274 0.0255 27 1 3.1292 1.4431 0.0256 28 1 1.6970 1.9489 -0.9024 29 1 1.6553 1.9636 0.8770 30 1 4.6296 -2.0394 3.1999 31 1 7.9883 -1.0171 -1.1795 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307558664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = -205.574160 kcal Electronic energy + Delta-G solvation = -17520.486610 eV Core-core repulsion = 14573.306709 eV Total energy + Delta-G solvation = -2947.179901 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21497 -39.00491 -36.89732 -35.91843 -34.54416 -33.75306 -30.47620 -29.57517 -28.34832 -26.19077 -22.87839 -22.81530 -22.20211 -19.20804 -18.58284 -18.31518 -17.44495 -16.75085 -16.42448 -16.29274 -15.66835 -15.29207 -14.80573 -14.52351 -14.22465 -13.67284 -13.51893 -13.24703 -13.22044 -13.05425 -12.90281 -12.77539 -12.73479 -12.35654 -12.14945 -11.96917 -11.62044 -10.94097 -10.74983 -10.44582 -10.02574 -8.18881 -6.43932 1.40978 1.43785 1.51842 2.16158 2.37732 2.87431 2.94485 3.07351 3.38582 3.39465 3.81576 3.89109 3.96759 4.19199 4.30297 4.36960 4.50029 4.62345 4.67008 4.74510 4.79599 4.94368 5.08868 5.23300 5.37219 5.62972 6.00327 6.20899 6.44914 6.71640 6.86716 7.33865 8.88344 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.032862 B = 0.009792 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.853834 B = 2858.833455 C = 3243.273909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.231 3.769 3 C -0.155 4.155 4 O -0.365 6.365 5 C 0.033 3.967 6 H 0.142 0.858 7 C 0.243 3.757 8 H 0.091 0.909 9 O -0.561 6.561 10 O -0.404 6.404 11 C 0.205 3.795 12 H 0.002 0.998 13 C -0.568 4.568 14 H 0.074 0.926 15 C 0.024 3.976 16 N -0.902 5.902 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.262 1.262 21 C 0.040 3.960 22 H 0.139 0.861 23 O -0.380 6.380 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.393 0.607 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -1.667 2.668 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.155 3.845 3 C -0.212 4.212 4 O -0.286 6.286 5 C -0.025 4.025 6 H 0.159 0.841 7 C 0.146 3.854 8 H 0.108 0.892 9 O -0.370 6.370 10 O -0.326 6.326 11 C 0.149 3.851 12 H 0.020 0.980 13 C -0.605 4.605 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.538 5.538 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.018 4.018 22 H 0.156 0.844 23 O -0.302 6.302 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.243 0.757 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.009 -1.161 2.635 11.379 hybrid contribution 1.385 -0.465 -0.425 1.521 sum -9.624 -1.626 2.210 10.007 Atomic orbital electron populations 1.22279 0.90632 1.03917 1.04408 1.23992 0.94849 0.91719 0.73971 1.22157 1.00760 0.94081 1.04183 1.88879 1.83756 1.24959 1.30986 1.25199 0.96886 0.87467 0.92908 0.84080 1.23662 0.86559 0.94831 0.80374 0.89168 1.86525 1.42344 1.83232 1.24860 1.88486 1.36222 1.80551 1.27365 1.20306 0.89079 0.94545 0.81179 0.98020 1.21682 0.94361 1.27409 1.17031 0.90806 1.26016 0.98946 0.95309 0.97603 1.70196 1.09556 1.35416 1.38670 0.85493 0.77071 0.79261 0.79078 1.19028 1.20956 1.18703 1.25038 0.92386 0.90223 0.94176 0.84407 1.88829 1.69139 1.41853 1.30358 0.89161 0.89455 0.91380 0.94906 0.89084 0.89121 0.75736 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.24 71.98 0.67 -3.28 16 2 C 0.23 8.22 1.54 30.59 0.05 8.27 16 3 C -0.15 -5.27 9.19 71.98 0.66 -4.60 16 4 O -0.36 -14.56 9.97 -119.74 -1.19 -15.75 16 5 C 0.03 1.24 4.60 31.81 0.15 1.39 16 6 H 0.14 4.07 8.14 -2.39 -0.02 4.05 16 7 C 0.24 10.00 4.83 72.35 0.35 10.35 16 8 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 9 O -0.56 -21.71 13.07 -119.73 -1.57 -23.27 16 10 O -0.40 -21.70 10.32 -126.27 -1.30 -23.01 16 11 C 0.20 10.99 3.15 30.09 0.09 11.09 16 12 H 0.00 0.13 7.77 -2.39 -0.02 0.11 16 13 C -0.57 -31.75 8.77 25.60 0.22 -31.52 16 14 H 0.07 3.84 7.44 -2.91 -0.02 3.82 16 15 C 0.02 1.36 5.41 84.66 0.46 1.82 16 16 N -0.90 -54.98 12.91 21.45 0.28 -54.71 16 17 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 C 0.04 1.68 4.24 31.68 0.13 1.81 16 22 H 0.14 5.26 7.60 -2.39 -0.02 5.24 16 23 O -0.38 -15.72 10.37 -126.31 -1.31 -17.03 16 24 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 1.35 7.98 -2.38 -0.02 1.33 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.39 12.24 9.12 -74.06 -0.68 11.56 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -71.86 263.70 0.17 -71.69 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.46 Total: 21.44 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 2.78 Total: -4.68 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.71 kcal Atomic # 8 Polarization: -73.69 SS G_CDS: -5.37 Total: -79.06 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.86 0.17 -71.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307558664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.889 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds