Wall clock time and date at job start Mon Mar 30 2020 02:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.83996 * 2 1 4 4 O 1.46284 * 109.51698 * 238.98790 * 2 1 3 5 5 C 1.39753 * 104.06822 * 231.00889 * 4 2 1 6 6 H 1.09002 * 110.03569 * 280.87621 * 5 4 2 7 7 C 1.50964 * 126.76723 * 144.17938 * 5 4 2 8 8 H 1.09003 * 110.72918 * 325.39362 * 7 5 4 9 9 C 1.50701 * 110.72682 * 88.68734 * 7 5 4 10 10 H 1.07998 * 120.00302 * 0.02562 * 9 7 5 11 11 C 1.37881 * 119.99779 * 179.97438 * 9 7 5 12 12 N 1.31515 * 120.00235 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99764 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46737 * 90.00268 * 13 11 9 15 15 H 1.48504 * 109.47011 * 210.00156 * 13 11 9 16 16 H 1.48501 * 109.47182 * 330.00724 * 13 11 9 17 17 O 1.45823 * 102.90381 * 207.04279 * 7 5 4 18 18 C 1.45341 * 109.02225 * 25.30291 * 17 7 5 19 19 H 1.09003 * 110.24140 * 125.44149 * 18 17 7 20 20 O 1.42903 * 110.24121 * 247.42365 * 18 17 7 21 21 C 1.50393 * 105.50988 * 6.42931 * 18 17 7 22 22 H 1.09000 * 110.05434 * 81.86391 * 21 18 17 23 23 O 1.40391 * 127.08647 * 218.46062 * 21 18 17 24 24 H 1.08997 * 109.46937 * 300.61737 * 1 2 3 25 25 H 1.09003 * 109.46636 * 60.61695 * 1 2 3 26 26 H 1.08995 * 109.47176 * 180.61457 * 1 2 3 27 27 H 1.08999 * 109.47106 * 179.38731 * 3 2 1 28 28 H 1.09001 * 109.46828 * 299.38190 * 3 2 1 29 29 H 1.09002 * 109.47051 * 59.38254 * 3 2 1 30 30 H 0.96995 * 119.99975 * 179.97438 * 12 11 9 31 31 H 0.96700 * 113.99957 * 296.08513 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0493 1.4392 0.0000 4 8 2.0188 -0.7104 -1.1817 5 6 2.9362 -1.6316 -0.6690 6 1 3.8833 -1.1361 -0.4556 7 6 3.1873 -3.0325 -1.1724 8 1 2.2633 -3.4842 -1.5333 9 6 4.2390 -3.0309 -2.2518 10 1 4.6968 -2.1020 -2.5583 11 6 4.6175 -4.2155 -2.8472 12 7 4.0604 -5.3467 -2.4736 13 14 5.9206 -4.2134 -4.1857 14 1 7.2618 -4.3820 -3.5709 15 1 5.6639 -5.3320 -5.1282 16 1 5.8720 -2.9246 -4.9219 17 8 3.6697 -3.7244 0.0172 18 6 3.1571 -3.0497 1.1981 19 1 2.6302 -3.7576 1.8379 20 8 4.2261 -2.4323 1.9178 21 6 2.2052 -2.0054 0.6833 22 1 1.2356 -2.4557 0.4708 23 8 2.0251 -0.7051 1.1809 24 1 -0.3633 0.5234 0.8844 25 1 -0.3633 0.5042 -0.8955 26 1 -0.3633 -1.0275 0.0110 27 1 3.1392 1.4322 0.0110 28 1 1.6983 1.9520 -0.8955 29 1 1.6803 1.9586 0.8844 30 1 4.3264 -6.1800 -2.8928 31 1 4.8727 -3.0568 2.2742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307558666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:16 Heat of formation + Delta-G solvation = -151.697546 kcal Electronic energy + Delta-G solvation = -17354.485161 eV Core-core repulsion = 14409.641525 eV Total energy + Delta-G solvation = -2944.843636 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06378 -37.63926 -35.21718 -34.48917 -32.56633 -32.34587 -28.74448 -27.88241 -27.28600 -24.31098 -21.11749 -20.79688 -20.72843 -18.24862 -16.87963 -16.49295 -15.62576 -15.47811 -14.95485 -14.51811 -14.05270 -13.53792 -13.46089 -12.80096 -12.52994 -12.45793 -12.15041 -12.00640 -11.90834 -11.73443 -11.38492 -11.07555 -10.91806 -10.39923 -10.35999 -10.24789 -9.63811 -9.17278 -9.00719 -8.70304 -8.45528 -6.15564 -4.28882 3.22133 3.27446 3.33034 3.37306 4.14089 4.33679 4.64073 4.72230 4.89707 4.99981 5.11379 5.36514 5.40242 5.52759 5.63964 5.77073 5.78540 5.90399 6.01668 6.11610 6.13064 6.28480 6.37715 6.62589 7.21042 7.40978 7.76444 7.89520 8.01389 8.23525 8.79402 9.42175 10.92284 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.032472 B = 0.009254 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.079691 B = 3025.036533 C = 3443.619376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 C -0.151 4.151 4 O -0.351 6.351 5 C 0.029 3.971 6 H 0.079 0.921 7 C 0.229 3.771 8 H 0.051 0.949 9 C -0.529 4.529 10 H 0.068 0.932 11 C 0.078 3.922 12 N -0.864 5.864 13 Si 0.900 3.100 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.369 6.369 18 C 0.261 3.739 19 H 0.079 0.921 20 O -0.563 6.563 21 C -0.008 4.008 22 H 0.086 0.914 23 O -0.342 6.342 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 7.187 5.657 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.160 3.840 3 C -0.208 4.208 4 O -0.271 6.271 5 C -0.030 4.030 6 H 0.097 0.903 7 C 0.174 3.826 8 H 0.068 0.932 9 C -0.565 4.565 10 H 0.086 0.914 11 C -0.128 4.128 12 N -0.499 5.499 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.195 1.195 17 O -0.291 6.291 18 C 0.163 3.837 19 H 0.096 0.904 20 O -0.371 6.371 21 C -0.067 4.067 22 H 0.104 0.896 23 O -0.262 6.262 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.246 7.488 5.457 10.648 hybrid contribution 0.816 -0.515 -0.385 1.039 sum -4.430 6.973 5.072 9.694 Atomic orbital electron populations 1.22217 0.93291 1.03448 1.03012 1.24658 0.93187 0.91514 0.74669 1.22001 1.02828 0.93252 1.02742 1.88630 1.59353 1.51376 1.27776 1.24432 0.92656 0.94063 0.91886 0.90300 1.19889 0.97046 0.82291 0.83327 0.93159 1.20991 1.24230 0.94095 1.17231 0.91379 1.25101 0.95962 0.95342 0.96415 1.70010 1.40895 0.98138 1.40907 0.86477 0.81696 0.77983 0.81205 1.20277 1.20907 1.19495 1.89850 1.73706 1.52129 1.13399 1.22460 0.85301 0.89026 0.86889 0.90410 1.86619 1.39737 1.38553 1.72164 1.24086 0.98750 0.87082 0.96815 0.89646 1.88908 1.86446 1.19895 1.30986 0.90714 0.90523 0.91621 0.91270 0.90418 0.90930 0.92547 0.77378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.18 37.16 0.34 -1.90 16 2 C 0.24 4.10 1.35 -26.73 -0.04 4.06 16 3 C -0.15 -2.17 9.31 37.16 0.35 -1.82 16 4 O -0.35 -7.51 10.98 -55.82 -0.61 -8.12 16 5 C 0.03 0.67 3.36 -24.89 -0.08 0.59 16 6 H 0.08 1.98 8.11 -51.93 -0.42 1.55 16 7 C 0.23 6.04 3.02 -28.91 -0.09 5.95 16 8 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 9 C -0.53 -15.04 8.83 -34.44 -0.30 -15.35 16 10 H 0.07 1.92 7.77 -52.49 -0.41 1.51 16 11 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 12 N -0.86 -25.13 13.16 55.43 0.73 -24.40 16 13 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 O -0.37 -9.47 11.05 -58.77 -0.65 -10.12 16 18 C 0.26 5.42 4.87 35.86 0.17 5.60 16 19 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 20 O -0.56 -11.14 13.56 -61.64 -0.84 -11.98 16 21 C -0.01 -0.16 3.50 -25.17 -0.09 -0.25 16 22 H 0.09 1.67 7.40 -51.93 -0.38 1.28 16 23 O -0.34 -6.72 11.03 -60.26 -0.66 -7.38 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.93 7.45 -51.93 -0.39 0.54 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.38 5.82 9.12 45.56 0.42 6.23 16 LS Contribution 264.66 15.07 3.99 3.99 Total: -1.00 -32.15 264.66 -6.18 -38.33 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.28 Total: 4.44 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 0.17 Total: -1.01 kcal Atomic # 7 Polarization: -25.13 SS G_CDS: 0.73 Total: -24.40 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -2.76 Total: -37.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.15 -6.18 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307558666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.367 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds