Wall clock time and date at job start Mon Mar 30 2020 02:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.83996 * 2 1 4 4 O 1.46284 * 109.51698 * 238.98790 * 2 1 3 5 5 C 1.39753 * 104.06822 * 231.00889 * 4 2 1 6 6 H 1.09002 * 110.03569 * 280.87621 * 5 4 2 7 7 C 1.50964 * 126.76723 * 144.17938 * 5 4 2 8 8 H 1.09003 * 110.72918 * 325.39362 * 7 5 4 9 9 C 1.50701 * 110.72682 * 88.68734 * 7 5 4 10 10 H 1.07998 * 120.00302 * 0.02562 * 9 7 5 11 11 C 1.37881 * 119.99779 * 179.97438 * 9 7 5 12 12 N 1.31515 * 120.00235 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99764 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46737 * 90.00268 * 13 11 9 15 15 H 1.48504 * 109.47011 * 210.00156 * 13 11 9 16 16 H 1.48501 * 109.47182 * 330.00724 * 13 11 9 17 17 O 1.45823 * 102.90381 * 207.04279 * 7 5 4 18 18 C 1.45341 * 109.02225 * 25.30291 * 17 7 5 19 19 H 1.09003 * 110.24140 * 125.44149 * 18 17 7 20 20 O 1.42903 * 110.24121 * 247.42365 * 18 17 7 21 21 C 1.50393 * 105.50988 * 6.42931 * 18 17 7 22 22 H 1.09000 * 110.05434 * 81.86391 * 21 18 17 23 23 O 1.40391 * 127.08647 * 218.46062 * 21 18 17 24 24 H 1.08997 * 109.46937 * 300.61737 * 1 2 3 25 25 H 1.09003 * 109.46636 * 60.61695 * 1 2 3 26 26 H 1.08995 * 109.47176 * 180.61457 * 1 2 3 27 27 H 1.08999 * 109.47106 * 179.38731 * 3 2 1 28 28 H 1.09001 * 109.46828 * 299.38190 * 3 2 1 29 29 H 1.09002 * 109.47051 * 59.38254 * 3 2 1 30 30 H 0.96995 * 119.99975 * 179.97438 * 12 11 9 31 31 H 0.96700 * 113.99957 * 296.08513 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0493 1.4392 0.0000 4 8 2.0188 -0.7104 -1.1817 5 6 2.9362 -1.6316 -0.6690 6 1 3.8833 -1.1361 -0.4556 7 6 3.1873 -3.0325 -1.1724 8 1 2.2633 -3.4842 -1.5333 9 6 4.2390 -3.0309 -2.2518 10 1 4.6968 -2.1020 -2.5583 11 6 4.6175 -4.2155 -2.8472 12 7 4.0604 -5.3467 -2.4736 13 14 5.9206 -4.2134 -4.1857 14 1 7.2618 -4.3820 -3.5709 15 1 5.6639 -5.3320 -5.1282 16 1 5.8720 -2.9246 -4.9219 17 8 3.6697 -3.7244 0.0172 18 6 3.1571 -3.0497 1.1981 19 1 2.6302 -3.7576 1.8379 20 8 4.2261 -2.4323 1.9178 21 6 2.2052 -2.0054 0.6833 22 1 1.2356 -2.4557 0.4708 23 8 2.0251 -0.7051 1.1809 24 1 -0.3633 0.5234 0.8844 25 1 -0.3633 0.5042 -0.8955 26 1 -0.3633 -1.0275 0.0110 27 1 3.1392 1.4322 0.0110 28 1 1.6983 1.9520 -0.8955 29 1 1.6803 1.9586 0.8844 30 1 4.3264 -6.1800 -2.8928 31 1 4.8727 -3.0568 2.2742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307558666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:16 Heat of formation + Delta-G solvation = -177.002219 kcal Electronic energy + Delta-G solvation = -17355.582454 eV Core-core repulsion = 14409.641525 eV Total energy + Delta-G solvation = -2945.940929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.68363 -39.34478 -36.89740 -36.11736 -34.64838 -33.72959 -30.58437 -29.63217 -28.44426 -26.29637 -22.77273 -22.64133 -22.14467 -19.90484 -18.87122 -18.15183 -17.38599 -17.14606 -16.50483 -16.38284 -15.71040 -15.18412 -14.95794 -14.38412 -14.28818 -14.13237 -13.40634 -13.36730 -13.18129 -13.11830 -13.00932 -12.83728 -12.69090 -12.40038 -12.17573 -11.91680 -11.22857 -10.86963 -10.80780 -10.71670 -10.44528 -8.27832 -6.50022 1.39672 1.40740 1.52544 1.64642 2.35117 2.65366 2.82570 3.17145 3.26709 3.34045 3.75814 3.79551 3.87917 4.04798 4.18731 4.27075 4.41509 4.63141 4.71250 4.72100 4.78247 4.85791 5.06091 5.16968 5.29636 5.58676 5.77518 5.90697 6.15712 6.61744 6.74446 7.25477 8.80720 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.032472 B = 0.009254 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.079691 B = 3025.036533 C = 3443.619376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.219 3.781 3 C -0.149 4.149 4 O -0.369 6.369 5 C 0.031 3.969 6 H 0.054 0.946 7 C 0.227 3.773 8 H 0.026 0.974 9 C -0.558 4.558 10 H 0.059 0.941 11 C 0.030 3.970 12 N -0.896 5.896 13 Si 0.968 3.032 14 H -0.271 1.271 15 H -0.272 1.272 16 H -0.265 1.265 17 O -0.396 6.396 18 C 0.256 3.744 19 H 0.114 0.886 20 O -0.571 6.571 21 C 0.006 3.994 22 H 0.097 0.903 23 O -0.349 6.349 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.269 0.731 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 8.125 6.043 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.145 3.855 3 C -0.206 4.206 4 O -0.291 6.291 5 C -0.028 4.028 6 H 0.072 0.928 7 C 0.172 3.828 8 H 0.044 0.956 9 C -0.594 4.594 10 H 0.078 0.922 11 C -0.174 4.174 12 N -0.532 5.532 13 Si 0.792 3.208 14 H -0.197 1.197 15 H -0.197 1.197 16 H -0.189 1.189 17 O -0.319 6.319 18 C 0.159 3.841 19 H 0.131 0.869 20 O -0.381 6.381 21 C -0.053 4.053 22 H 0.114 0.886 23 O -0.270 6.270 24 H 0.121 0.879 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.078 0.922 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.704 8.435 5.866 11.751 hybrid contribution 0.913 -0.744 -0.423 1.251 sum -4.791 7.691 5.443 10.571 Atomic orbital electron populations 1.22256 0.90179 1.03774 1.05267 1.25318 0.95466 0.92031 0.72684 1.22070 1.01730 0.91643 1.05138 1.88601 1.58883 1.51377 1.30212 1.23945 0.92529 0.92817 0.93549 0.92816 1.19591 0.95444 0.84067 0.83654 0.95621 1.21280 1.25113 0.94199 1.18858 0.92239 1.25954 0.98012 0.94753 0.98650 1.70106 1.42211 0.98723 1.42183 0.85417 0.78729 0.78382 0.78301 1.19671 1.19697 1.18947 1.89746 1.74474 1.53059 1.14606 1.22786 0.85720 0.89756 0.85846 0.86867 1.86575 1.40234 1.39536 1.71804 1.23993 0.98805 0.87649 0.94894 0.88556 1.88893 1.86754 1.19317 1.32015 0.87862 0.88799 0.92337 0.93103 0.88419 0.88084 0.92159 0.75271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.18 71.98 0.66 -3.25 16 2 C 0.22 7.28 1.35 30.60 0.04 7.32 16 3 C -0.15 -3.95 9.31 71.98 0.67 -3.28 16 4 O -0.37 -15.86 10.98 -115.83 -1.27 -17.13 16 5 C 0.03 1.49 3.36 31.79 0.11 1.59 16 6 H 0.05 2.79 8.11 -2.39 -0.02 2.77 16 7 C 0.23 12.38 3.02 29.19 0.09 12.46 16 8 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 9 C -0.56 -32.66 8.83 25.60 0.23 -32.44 16 10 H 0.06 3.47 7.77 -2.91 -0.02 3.44 16 11 C 0.03 1.70 5.45 84.66 0.46 2.16 16 12 N -0.90 -52.95 13.16 21.45 0.28 -52.67 16 13 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 O -0.40 -20.70 11.05 -126.48 -1.40 -22.09 16 18 C 0.26 10.47 4.87 71.14 0.35 10.82 16 19 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 20 O -0.57 -22.09 13.56 -123.73 -1.68 -23.77 16 21 C 0.01 0.25 3.50 31.61 0.11 0.36 16 22 H 0.10 3.68 7.40 -2.39 -0.02 3.66 16 23 O -0.35 -13.21 11.03 -118.71 -1.31 -14.52 16 24 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 1.53 7.45 -2.39 -0.02 1.52 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.40 11.75 9.12 -74.06 -0.68 11.07 16 Total: -1.00 -70.07 264.66 -0.17 -70.24 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.46 Total: 18.18 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 2.71 Total: -4.24 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.28 Total: -52.67 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: -5.66 Total: -77.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.07 -0.17 -70.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307558666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.761 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds