Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00047 * 2 1 4 4 H 1.08999 * 110.54122 * 357.38648 * 3 2 1 5 5 C 1.54810 * 110.48821 * 234.76613 * 3 2 1 6 6 C 1.54991 * 102.09350 * 262.20800 * 5 3 2 7 7 H 1.08993 * 110.62131 * 81.47823 * 6 5 3 8 8 C 1.53002 * 110.61707 * 204.31975 * 6 5 3 9 9 Cl 1.80293 * 109.47260 * 184.99977 * 8 6 5 10 10 O 1.44378 * 103.49061 * 322.97120 * 6 5 3 11 11 C 1.43745 * 106.97348 * 40.06796 * 10 6 5 12 12 H 1.09000 * 109.88175 * 92.90294 * 11 10 6 13 13 C 1.53001 * 109.87879 * 214.05844 * 11 10 6 14 14 C 1.50696 * 109.47150 * 292.82862 * 13 11 10 15 15 H 1.08000 * 120.00045 * 359.97438 * 14 13 11 16 16 C 1.37876 * 120.00160 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00241 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47521 * 89.99931 * 18 16 14 20 20 H 1.48496 * 109.47231 * 210.00178 * 18 16 14 21 21 H 1.48504 * 109.46878 * 330.00024 * 18 16 14 22 22 H 1.07997 * 119.99959 * 180.02562 * 1 2 3 23 23 H 1.07998 * 119.99882 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.99279 * 180.02562 * 2 1 3 25 25 H 1.09005 * 110.90592 * 20.40774 * 5 3 2 26 26 H 1.09005 * 110.90412 * 144.00839 * 5 3 2 27 27 H 1.09003 * 109.47153 * 305.00268 * 8 6 5 28 28 H 1.09001 * 109.47516 * 64.99442 * 8 6 5 29 29 H 1.09001 * 109.46771 * 52.83067 * 13 11 10 30 30 H 1.09000 * 109.46847 * 172.82528 * 13 11 10 31 31 H 0.96999 * 119.99689 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3717 2.1461 -0.0465 5 6 3.0590 1.3560 -1.1845 6 6 4.3902 0.9409 -0.5080 7 1 4.4517 -0.1433 -0.4148 8 6 5.5859 1.4811 -1.2951 9 17 7.1143 0.8598 -0.5679 10 8 4.3135 1.5596 0.7943 11 6 2.9584 1.4112 1.2502 12 1 2.8661 0.5058 1.8499 13 6 2.5517 2.6313 2.0789 14 6 3.3479 2.6577 3.3581 15 1 4.0712 1.8816 3.5601 16 6 3.1528 3.6726 4.2708 17 7 2.2716 4.6175 4.0251 18 14 4.1402 3.7057 5.8561 19 1 5.3929 4.4741 5.6432 20 1 3.3382 4.3528 6.9253 21 1 4.4744 2.3163 6.2601 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8499 -0.9354 -0.0004 25 1 2.7778 0.6432 -1.9598 26 1 3.1276 2.3648 -1.5918 27 1 5.5169 1.1521 -2.3320 28 1 5.5828 2.5705 -1.2587 29 1 2.7490 3.5395 1.5093 30 1 1.4888 2.5733 2.3135 31 1 2.1346 5.3317 4.6670 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308075156.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -72.323318 kcal Electronic energy + Delta-G solvation = -14214.974947 eV Core-core repulsion = 11714.282400 eV Total energy + Delta-G solvation = -2500.692546 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.081 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74579 -36.89621 -35.51801 -35.28363 -33.03922 -31.62053 -29.62798 -26.60318 -24.18150 -22.35233 -21.93472 -20.71863 -18.44049 -17.31780 -16.81649 -16.51463 -16.10183 -15.42126 -14.85552 -14.58461 -14.37766 -14.03229 -13.66427 -13.34642 -13.24057 -12.75446 -12.63623 -12.45995 -12.26506 -12.05091 -11.88056 -11.45811 -11.29822 -11.27500 -11.07513 -10.58278 -10.40421 -10.10746 -8.19849 -6.27870 1.34737 1.37378 1.39244 1.44288 1.50118 2.41011 2.94054 3.15469 3.63858 3.71972 3.89592 4.08847 4.14461 4.34347 4.38978 4.53079 4.55107 4.61230 4.89370 4.90644 4.99471 5.07595 5.26944 5.41222 5.58290 5.71131 5.79038 5.92083 6.15664 6.35892 6.84775 7.39232 8.91820 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.018261 B = 0.009124 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.946772 B = 3068.035098 C = 4288.969411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.152 4.152 3 C -0.093 4.093 4 H 0.075 0.925 5 C -0.126 4.126 6 C 0.054 3.946 7 H 0.082 0.918 8 C -0.017 4.017 9 Cl -0.203 7.203 10 O -0.380 6.380 11 C 0.100 3.900 12 H 0.048 0.952 13 C 0.032 3.968 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.277 1.277 21 H -0.267 1.267 22 H 0.119 0.881 23 H 0.091 0.909 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.144 0.856 28 H 0.096 0.904 29 H -0.005 1.005 30 H 0.008 0.992 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 -9.034 -13.398 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.170 4.170 3 C -0.112 4.112 4 H 0.094 0.906 5 C -0.164 4.164 6 C -0.004 4.004 7 H 0.100 0.900 8 C -0.080 4.080 9 Cl -0.177 7.177 10 O -0.300 6.300 11 C 0.043 3.957 12 H 0.066 0.934 13 C -0.005 4.005 14 C -0.565 4.565 15 H 0.068 0.932 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.202 1.202 21 H -0.191 1.191 22 H 0.138 0.862 23 H 0.109 0.891 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.102 0.898 27 H 0.162 0.838 28 H 0.114 0.886 29 H 0.013 0.987 30 H 0.027 0.973 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.400 -8.823 -13.155 15.902 hybrid contribution 0.242 0.354 1.116 1.196 sum 1.643 -8.469 -12.039 14.811 Atomic orbital electron populations 1.24028 0.95695 1.02619 0.99770 1.22847 0.96230 0.97006 1.00903 1.21757 0.97634 0.97202 0.94612 0.90649 1.23132 0.92107 1.03759 0.97397 1.23587 0.94706 0.97888 0.84177 0.90020 1.24577 0.81934 1.02196 0.99270 1.98714 1.41850 1.89839 1.87301 1.89059 1.28693 1.78967 1.33249 1.22730 0.80864 0.97902 0.94205 0.93425 1.19117 0.95043 0.92492 0.93838 1.21513 1.21495 1.09491 1.04048 0.93202 1.25868 0.96500 0.95223 1.02012 1.70070 1.35923 1.13783 1.37536 0.85541 0.78589 0.78539 0.78975 1.20153 1.20248 1.19109 0.86249 0.89070 0.86035 0.86818 0.89823 0.83814 0.88584 0.98661 0.97337 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 14.33 67.78 0.97 -3.43 16 2 C -0.15 -3.99 8.48 25.64 0.22 -3.77 16 3 C -0.09 -2.97 3.00 -10.55 -0.03 -3.00 16 4 H 0.08 2.59 7.41 -2.39 -0.02 2.57 16 5 C -0.13 -3.07 6.13 31.89 0.20 -2.88 16 6 C 0.05 1.53 3.38 31.28 0.11 1.64 16 7 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 8 C -0.02 -0.41 6.41 71.98 0.46 0.05 16 9 Cl -0.20 -5.81 29.14 -2.72 -0.08 -5.89 16 10 O -0.38 -15.91 10.71 -148.98 -1.59 -17.51 16 11 C 0.10 4.27 3.01 30.97 0.09 4.36 16 12 H 0.05 2.09 7.68 -2.39 -0.02 2.07 16 13 C 0.03 1.74 4.46 29.85 0.13 1.87 16 14 C -0.53 -31.54 8.94 25.60 0.23 -31.31 16 15 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 18 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H 0.12 2.25 8.06 -2.91 -0.02 2.22 16 23 H 0.09 2.28 7.87 -2.91 -0.02 2.25 16 24 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 25 H 0.11 1.97 7.86 -2.38 -0.02 1.95 16 26 H 0.08 1.97 8.06 -2.38 -0.02 1.95 16 27 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -69.31 279.34 4.56 -64.75 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.09 Total: 3.62 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 2.84 Total: -35.93 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.28 Total: -57.54 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.59 Total: -17.51 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 17 Polarization: -5.81 SS G_CDS: -0.08 Total: -5.89 kcal Total: -69.31 4.56 -64.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308075156.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.574 kcal (2) G-P(sol) polarization free energy of solvation -69.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds