Wall clock time and date at job start Mon Mar 30 2020 03:28:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86793 * 119.99952 * 2 1
4 4 H 1.48504 * 109.46923 * 269.99396 * 3 2 1
5 5 H 1.48500 * 109.47142 * 29.99586 * 3 2 1
6 6 H 1.48500 * 109.47102 * 149.99608 * 3 2 1
7 7 C 1.37881 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00170 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00109 * 180.02562 * 7 2 1
10 10 N 1.46498 * 109.47490 * 180.02562 * 9 7 2
11 11 C 1.34772 * 120.00034 * 179.97438 * 10 9 7
12 12 O 1.21281 * 120.00192 * 0.02562 * 11 10 9
13 13 C 1.50701 * 120.00075 * 180.02562 * 11 10 9
14 14 N 1.46898 * 109.47548 * 174.57792 * 13 11 10
15 15 C 1.48753 * 111.00175 * 177.05359 * 14 13 11
16 16 C 1.55129 * 101.66700 * 157.59073 * 15 14 13
17 17 H 1.09007 * 110.96521 * 82.99750 * 16 15 14
18 18 O 1.42901 * 110.80123 * 206.40388 * 16 15 14
19 19 C 1.54419 * 102.52657 * 324.66595 * 16 15 14
20 20 O 1.43501 * 106.59412 * 21.25672 * 19 16 15
21 21 H 0.97002 * 120.00475 * 0.02562 * 1 2 3
22 22 H 1.09000 * 109.47328 * 59.99855 * 9 7 2
23 23 H 1.09005 * 109.46919 * 300.00715 * 9 7 2
24 24 H 0.96998 * 119.99643 * 359.72754 * 10 9 7
25 25 H 1.08997 * 109.47455 * 294.57816 * 13 11 10
26 26 H 1.09005 * 109.47263 * 54.57811 * 13 11 10
27 27 H 1.09006 * 110.98404 * 275.68090 * 15 14 13
28 28 H 1.08997 * 110.98980 * 39.49569 * 15 14 13
29 29 H 0.96693 * 114.00077 * 174.55420 * 18 16 15
30 30 H 1.09000 * 110.03002 * 261.97721 * 19 16 15
31 31 H 1.08999 * 110.03854 * 140.54004 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6526 0.6999
6 1 3.5466 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1295 0.0005
9 6 3.5115 -1.1941 0.0011
10 7 3.9999 -2.5753 0.0010
11 6 5.3249 -2.8216 0.0009
12 8 6.1130 -1.8997 0.0014
13 6 5.8273 -4.2424 0.0002
14 7 7.2904 -4.2444 -0.1306
15 6 7.8297 -5.6292 -0.0640
16 6 9.1950 -5.4691 -0.7829
17 1 9.9551 -5.0942 -0.0975
18 8 9.6082 -6.7053 -1.3686
19 6 8.8780 -4.4240 -1.8747
20 8 7.7029 -3.7230 -1.4422
21 1 -0.4851 0.8400 -0.0004
22 1 3.8745 -0.6801 0.8911
23 1 3.8752 -0.6804 -0.8888
24 1 3.3695 -3.3126 0.0046
25 1 5.5454 -4.7279 0.9345
26 1 5.3869 -4.7831 -0.8375
27 1 7.9677 -5.9450 0.9701
28 1 7.1852 -6.3254 -0.6006
29 1 10.4134 -6.6391 -1.8998
30 1 8.6868 -4.9228 -2.8248
31 1 9.7107 -3.7283 -1.9787
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308458216.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:37
Heat of formation + Delta-G solvation = -69.842061 kcal
Electronic energy + Delta-G solvation = -15937.022091 eV
Core-core repulsion = 13028.020727 eV
Total energy + Delta-G solvation = -2909.001364 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 230.110 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.55961 -38.53954 -36.39385 -34.21770 -33.26703 -32.29287 -30.54422 -28.41168
-26.53111 -23.48604 -21.98918 -21.76345 -19.82372 -17.93986 -17.30012 -16.94413
-16.20803 -15.98866 -15.13663 -14.92726 -14.69873 -14.02018 -13.74697 -13.49687
-13.46273 -12.95300 -12.57908 -12.48906 -12.21328 -11.81068 -11.63008 -10.98420
-10.72743 -10.52992 -10.46652 -9.93754 -9.46574 -9.17040 -8.75909 -8.74514
-8.07833 -6.19060 -4.21038 2.62933 3.26015 3.30949 3.36038 3.39789
3.45983 3.95986 4.19218 4.34800 4.37192 4.61838 4.91422 5.04197
5.16366 5.24479 5.26256 5.31864 5.40994 5.44842 5.57495 6.19471
6.61541 6.86894 7.11039 7.12364 7.28544 7.43441 8.17808 8.55826
8.78511 9.01939 9.41606 10.92902
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.067369 B = 0.004849 C = 0.004661
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 415.519065 B = 5773.385400 C = 6006.218463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.077 3.923
3 Si 0.877 3.123
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.260 1.260
7 C -0.543 4.543
8 H 0.079 0.921
9 C 0.223 3.777
10 N -0.710 5.710
11 C 0.505 3.495
12 O -0.527 6.527
13 C 0.006 3.994
14 N -0.299 5.299
15 C -0.002 4.002
16 C 0.085 3.915
17 H 0.086 0.914
18 O -0.559 6.559
19 C 0.004 3.996
20 O -0.227 6.227
21 H 0.267 0.733
22 H 0.025 0.975
23 H 0.020 0.980
24 H 0.395 0.605
25 H 0.123 0.877
26 H 0.078 0.922
27 H 0.117 0.883
28 H 0.072 0.928
29 H 0.385 0.615
30 H 0.074 0.926
31 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.755 -13.052 -1.420 21.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.126 4.126
3 Si 0.703 3.297
4 H -0.199 1.199
5 H -0.209 1.209
6 H -0.184 1.184
7 C -0.581 4.581
8 H 0.097 0.903
9 C 0.100 3.900
10 N -0.360 5.360
11 C 0.288 3.712
12 O -0.403 6.403
13 C -0.127 4.127
14 N -0.067 5.067
15 C -0.131 4.131
16 C 0.024 3.976
17 H 0.104 0.896
18 O -0.364 6.364
19 C -0.075 4.075
20 O -0.231 6.231
21 H 0.077 0.923
22 H 0.043 0.957
23 H 0.038 0.962
24 H 0.228 0.772
25 H 0.141 0.859
26 H 0.096 0.904
27 H 0.135 0.865
28 H 0.090 0.910
29 H 0.233 0.767
30 H 0.092 0.908
31 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 16.705 -11.928 -0.837 20.543
hybrid contribution 0.160 -0.005 -0.933 0.946
sum 16.864 -11.933 -1.770 20.735
Atomic orbital electron populations
1.69882 1.06222 1.27413 1.49585 1.24795 0.94786 0.99196 0.93858
0.86809 0.80606 0.83174 0.79076 1.19859 1.20920 1.18429 1.21105
0.88568 0.95205 1.53206 0.90277 1.19467 0.95099 0.78613 0.96784
1.46126 1.05420 1.11008 1.73464 1.19973 0.83197 0.89963 0.78082
1.90685 1.55297 1.45484 1.48868 1.22566 0.88199 0.97803 1.04084
1.71299 1.10666 1.15829 1.08890 1.23997 0.95023 0.91118 1.02923
1.23324 0.96761 0.83904 0.93617 0.89576 1.86491 1.48460 1.31150
1.70326 1.24058 0.90496 0.95392 0.97558 1.91674 1.43385 1.56724
1.31296 0.92287 0.95694 0.96206 0.77199 0.85942 0.90425 0.86520
0.90952 0.76671 0.90790 0.90226
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16
2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16
3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16
4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16
5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16
7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16
8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16
9 C 0.22 5.62 4.50 -5.20 -0.02 5.60 16
10 N -0.71 -14.73 5.55 -61.47 -0.34 -15.07 16
11 C 0.50 10.09 7.69 -10.99 -0.08 10.00 16
12 O -0.53 -12.87 15.95 -4.70 -0.07 -12.94 16
13 C 0.01 0.08 5.66 -4.98 -0.03 0.05 16
14 N -0.30 -4.40 5.51 -112.40 -0.62 -5.02 16
15 C 0.00 -0.02 6.59 -1.67 -0.01 -0.03 16
16 C 0.08 0.78 4.47 -24.86 -0.11 0.67 16
17 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
18 O -0.56 -4.49 13.40 -35.23 -0.47 -4.96 16
19 C 0.00 0.04 7.70 37.90 0.29 0.34 16
20 O -0.23 -3.75 11.14 -24.60 -0.27 -4.02 16
21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
22 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16
23 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16
24 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16
25 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16
26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16
27 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16
28 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16
29 H 0.39 1.33 9.11 45.56 0.42 1.74 16
30 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16
31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
LS Contribution 270.76 15.07 4.08 4.08
Total: -1.00 -35.99 270.76 -5.22 -41.21
By element:
Atomic # 1 Polarization: 5.51 SS G_CDS: -3.22 Total: 2.29 kcal
Atomic # 6 Polarization: 3.70 SS G_CDS: -0.40 Total: 3.29 kcal
Atomic # 7 Polarization: -45.91 SS G_CDS: -0.19 Total: -46.10 kcal
Atomic # 8 Polarization: -21.10 SS G_CDS: -0.82 Total: -21.93 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -35.99 -5.22 -41.21 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308458216.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.635 kcal
(2) G-P(sol) polarization free energy of solvation -35.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.625 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds