Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99952 * 2 1 4 4 H 1.48504 * 109.46923 * 269.99396 * 3 2 1 5 5 H 1.48500 * 109.47142 * 29.99586 * 3 2 1 6 6 H 1.48500 * 109.47102 * 149.99608 * 3 2 1 7 7 C 1.37881 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00170 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00109 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00034 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00192 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47548 * 174.57792 * 13 11 10 15 15 C 1.48753 * 111.00175 * 177.05359 * 14 13 11 16 16 C 1.55129 * 101.66700 * 157.59073 * 15 14 13 17 17 H 1.09007 * 110.96521 * 82.99750 * 16 15 14 18 18 O 1.42901 * 110.80123 * 206.40388 * 16 15 14 19 19 C 1.54419 * 102.52657 * 324.66595 * 16 15 14 20 20 O 1.43501 * 106.59412 * 21.25672 * 19 16 15 21 21 H 0.97002 * 120.00475 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47328 * 59.99855 * 9 7 2 23 23 H 1.09005 * 109.46919 * 300.00715 * 9 7 2 24 24 H 0.96998 * 119.99643 * 359.72754 * 10 9 7 25 25 H 1.08997 * 109.47455 * 294.57816 * 13 11 10 26 26 H 1.09005 * 109.47263 * 54.57811 * 13 11 10 27 27 H 1.09006 * 110.98404 * 275.68090 * 15 14 13 28 28 H 1.08997 * 110.98980 * 39.49569 * 15 14 13 29 29 H 0.96693 * 114.00077 * 174.55420 * 18 16 15 30 30 H 1.09000 * 110.03002 * 261.97721 * 19 16 15 31 31 H 1.08999 * 110.03854 * 140.54004 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1130 -1.8997 0.0014 13 6 5.8273 -4.2424 0.0002 14 7 7.2904 -4.2444 -0.1306 15 6 7.8297 -5.6292 -0.0640 16 6 9.1950 -5.4691 -0.7829 17 1 9.9551 -5.0942 -0.0975 18 8 9.6082 -6.7053 -1.3686 19 6 8.8780 -4.4240 -1.8747 20 8 7.7029 -3.7230 -1.4422 21 1 -0.4851 0.8400 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 3.3695 -3.3126 0.0046 25 1 5.5454 -4.7279 0.9345 26 1 5.3869 -4.7831 -0.8375 27 1 7.9677 -5.9450 0.9701 28 1 7.1852 -6.3254 -0.6006 29 1 10.4134 -6.6391 -1.8998 30 1 8.6868 -4.9228 -2.8248 31 1 9.7107 -3.7283 -1.9787 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308458216.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -69.842061 kcal Electronic energy + Delta-G solvation = -15937.022091 eV Core-core repulsion = 13028.020727 eV Total energy + Delta-G solvation = -2909.001364 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55961 -38.53954 -36.39385 -34.21770 -33.26703 -32.29287 -30.54422 -28.41168 -26.53111 -23.48604 -21.98918 -21.76345 -19.82372 -17.93986 -17.30012 -16.94413 -16.20803 -15.98866 -15.13663 -14.92726 -14.69873 -14.02018 -13.74697 -13.49687 -13.46273 -12.95300 -12.57908 -12.48906 -12.21328 -11.81068 -11.63008 -10.98420 -10.72743 -10.52992 -10.46652 -9.93754 -9.46574 -9.17040 -8.75909 -8.74514 -8.07833 -6.19060 -4.21038 2.62933 3.26015 3.30949 3.36038 3.39789 3.45983 3.95986 4.19218 4.34800 4.37192 4.61838 4.91422 5.04197 5.16366 5.24479 5.26256 5.31864 5.40994 5.44842 5.57495 6.19471 6.61541 6.86894 7.11039 7.12364 7.28544 7.43441 8.17808 8.55826 8.78511 9.01939 9.41606 10.92902 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.067369 B = 0.004849 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.519065 B = 5773.385400 C = 6006.218463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.223 3.777 10 N -0.710 5.710 11 C 0.505 3.495 12 O -0.527 6.527 13 C 0.006 3.994 14 N -0.299 5.299 15 C -0.002 4.002 16 C 0.085 3.915 17 H 0.086 0.914 18 O -0.559 6.559 19 C 0.004 3.996 20 O -0.227 6.227 21 H 0.267 0.733 22 H 0.025 0.975 23 H 0.020 0.980 24 H 0.395 0.605 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.385 0.615 30 H 0.074 0.926 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.755 -13.052 -1.420 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.360 5.360 11 C 0.288 3.712 12 O -0.403 6.403 13 C -0.127 4.127 14 N -0.067 5.067 15 C -0.131 4.131 16 C 0.024 3.976 17 H 0.104 0.896 18 O -0.364 6.364 19 C -0.075 4.075 20 O -0.231 6.231 21 H 0.077 0.923 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.228 0.772 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.233 0.767 30 H 0.092 0.908 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.705 -11.928 -0.837 20.543 hybrid contribution 0.160 -0.005 -0.933 0.946 sum 16.864 -11.933 -1.770 20.735 Atomic orbital electron populations 1.69882 1.06222 1.27413 1.49585 1.24795 0.94786 0.99196 0.93858 0.86809 0.80606 0.83174 0.79076 1.19859 1.20920 1.18429 1.21105 0.88568 0.95205 1.53206 0.90277 1.19467 0.95099 0.78613 0.96784 1.46126 1.05420 1.11008 1.73464 1.19973 0.83197 0.89963 0.78082 1.90685 1.55297 1.45484 1.48868 1.22566 0.88199 0.97803 1.04084 1.71299 1.10666 1.15829 1.08890 1.23997 0.95023 0.91118 1.02923 1.23324 0.96761 0.83904 0.93617 0.89576 1.86491 1.48460 1.31150 1.70326 1.24058 0.90496 0.95392 0.97558 1.91674 1.43385 1.56724 1.31296 0.92287 0.95694 0.96206 0.77199 0.85942 0.90425 0.86520 0.90952 0.76671 0.90790 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 9 C 0.22 5.62 4.50 -5.20 -0.02 5.60 16 10 N -0.71 -14.73 5.55 -61.47 -0.34 -15.07 16 11 C 0.50 10.09 7.69 -10.99 -0.08 10.00 16 12 O -0.53 -12.87 15.95 -4.70 -0.07 -12.94 16 13 C 0.01 0.08 5.66 -4.98 -0.03 0.05 16 14 N -0.30 -4.40 5.51 -112.40 -0.62 -5.02 16 15 C 0.00 -0.02 6.59 -1.67 -0.01 -0.03 16 16 C 0.08 0.78 4.47 -24.86 -0.11 0.67 16 17 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 18 O -0.56 -4.49 13.40 -35.23 -0.47 -4.96 16 19 C 0.00 0.04 7.70 37.90 0.29 0.34 16 20 O -0.23 -3.75 11.14 -24.60 -0.27 -4.02 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 23 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 24 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 25 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.72 8.01 -51.93 -0.42 0.31 16 29 H 0.39 1.33 9.11 45.56 0.42 1.74 16 30 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -35.99 270.76 -5.22 -41.21 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.22 Total: 2.29 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.40 Total: 3.29 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.19 Total: -46.10 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.82 Total: -21.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.99 -5.22 -41.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308458216.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.635 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds