Wall clock time and date at job start Mon Mar 30 2020 03:28:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86793 * 119.99952 * 2 1
4 4 H 1.48504 * 109.46923 * 269.99396 * 3 2 1
5 5 H 1.48500 * 109.47142 * 29.99586 * 3 2 1
6 6 H 1.48500 * 109.47102 * 149.99608 * 3 2 1
7 7 C 1.37881 * 119.99902 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00170 * 0.02562 * 7 2 1
9 9 C 1.50696 * 120.00109 * 180.02562 * 7 2 1
10 10 N 1.46498 * 109.47490 * 180.02562 * 9 7 2
11 11 C 1.34772 * 120.00034 * 179.97438 * 10 9 7
12 12 O 1.21281 * 120.00192 * 0.02562 * 11 10 9
13 13 C 1.50701 * 120.00075 * 180.02562 * 11 10 9
14 14 N 1.46898 * 109.47548 * 174.57792 * 13 11 10
15 15 C 1.48753 * 111.00175 * 177.05359 * 14 13 11
16 16 C 1.55129 * 101.66700 * 157.59073 * 15 14 13
17 17 H 1.09007 * 110.96521 * 82.99750 * 16 15 14
18 18 O 1.42901 * 110.80123 * 206.40388 * 16 15 14
19 19 C 1.54419 * 102.52657 * 324.66595 * 16 15 14
20 20 O 1.43501 * 106.59412 * 21.25672 * 19 16 15
21 21 H 0.97002 * 120.00475 * 0.02562 * 1 2 3
22 22 H 1.09000 * 109.47328 * 59.99855 * 9 7 2
23 23 H 1.09005 * 109.46919 * 300.00715 * 9 7 2
24 24 H 0.96998 * 119.99643 * 359.72754 * 10 9 7
25 25 H 1.08997 * 109.47455 * 294.57816 * 13 11 10
26 26 H 1.09005 * 109.47263 * 54.57811 * 13 11 10
27 27 H 1.09006 * 110.98404 * 275.68090 * 15 14 13
28 28 H 1.08997 * 110.98980 * 39.49569 * 15 14 13
29 29 H 0.96693 * 114.00077 * 174.55420 * 18 16 15
30 30 H 1.09000 * 110.03002 * 261.97721 * 19 16 15
31 31 H 1.08999 * 110.03854 * 140.54004 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4465 2.6526 0.6999
6 1 3.5466 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1295 0.0005
9 6 3.5115 -1.1941 0.0011
10 7 3.9999 -2.5753 0.0010
11 6 5.3249 -2.8216 0.0009
12 8 6.1130 -1.8997 0.0014
13 6 5.8273 -4.2424 0.0002
14 7 7.2904 -4.2444 -0.1306
15 6 7.8297 -5.6292 -0.0640
16 6 9.1950 -5.4691 -0.7829
17 1 9.9551 -5.0942 -0.0975
18 8 9.6082 -6.7053 -1.3686
19 6 8.8780 -4.4240 -1.8747
20 8 7.7029 -3.7230 -1.4422
21 1 -0.4851 0.8400 -0.0004
22 1 3.8745 -0.6801 0.8911
23 1 3.8752 -0.6804 -0.8888
24 1 3.3695 -3.3126 0.0046
25 1 5.5454 -4.7279 0.9345
26 1 5.3869 -4.7831 -0.8375
27 1 7.9677 -5.9450 0.9701
28 1 7.1852 -6.3254 -0.6006
29 1 10.4134 -6.6391 -1.8998
30 1 8.6868 -4.9228 -2.8248
31 1 9.7107 -3.7283 -1.9787
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308458216.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:37
Heat of formation + Delta-G solvation = -102.066473 kcal
Electronic energy + Delta-G solvation = -15938.419446 eV
Core-core repulsion = 13028.020727 eV
Total energy + Delta-G solvation = -2910.398720 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 230.110 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.73152 -39.84297 -37.15938 -36.11319 -34.48552 -34.23468 -31.48094 -30.14820
-27.80257 -24.75047 -23.50071 -22.76256 -21.46076 -19.20822 -18.57425 -17.98032
-17.68705 -17.21639 -16.71432 -16.23995 -16.08422 -15.59986 -14.82071 -14.75052
-14.56204 -14.43789 -14.09859 -13.98548 -13.44638 -13.04515 -13.00714 -12.67817
-12.53973 -11.93333 -11.65626 -11.35648 -11.16366 -10.92035 -10.78397 -9.91429
-9.79557 -8.40365 -6.47079 1.32481 1.34617 1.47898 1.63933 1.77231
2.26790 2.29377 2.94061 2.95083 3.40959 3.51499 3.87487 3.93947
4.10324 4.21187 4.36274 4.43249 4.55277 4.65130 4.78113 4.84722
5.03213 5.22997 5.28936 5.53637 5.68267 6.09844 6.53693 6.72703
6.86957 7.16346 7.46053 8.74326
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.067369 B = 0.004849 C = 0.004661
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 415.519065 B = 5773.385400 C = 6006.218463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.931 5.931
2 C 0.028 3.972
3 Si 0.936 3.064
4 H -0.267 1.267
5 H -0.271 1.271
6 H -0.262 1.262
7 C -0.546 4.546
8 H 0.061 0.939
9 C 0.234 3.766
10 N -0.708 5.708
11 C 0.501 3.499
12 O -0.575 6.575
13 C 0.017 3.983
14 N -0.319 5.319
15 C -0.003 4.003
16 C 0.096 3.904
17 H 0.099 0.901
18 O -0.566 6.566
19 C -0.004 4.004
20 O -0.275 6.275
21 H 0.273 0.727
22 H 0.013 0.987
23 H 0.006 0.994
24 H 0.409 0.591
25 H 0.162 0.838
26 H 0.098 0.902
27 H 0.141 0.859
28 H 0.078 0.922
29 H 0.405 0.595
30 H 0.081 0.919
31 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.144 -14.244 -1.169 23.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.173 4.173
3 Si 0.760 3.240
4 H -0.192 1.192
5 H -0.196 1.196
6 H -0.186 1.186
7 C -0.584 4.584
8 H 0.080 0.920
9 C 0.110 3.890
10 N -0.360 5.360
11 C 0.288 3.712
12 O -0.454 6.454
13 C -0.115 4.115
14 N -0.088 5.088
15 C -0.131 4.131
16 C 0.035 3.965
17 H 0.117 0.883
18 O -0.374 6.374
19 C -0.082 4.082
20 O -0.278 6.278
21 H 0.082 0.918
22 H 0.030 0.970
23 H 0.024 0.976
24 H 0.245 0.755
25 H 0.180 0.820
26 H 0.116 0.884
27 H 0.159 0.841
28 H 0.096 0.904
29 H 0.256 0.744
30 H 0.099 0.901
31 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 18.110 -13.165 -0.609 22.398
hybrid contribution -0.240 0.262 -1.035 1.094
sum 17.870 -12.904 -1.644 22.103
Atomic orbital electron populations
1.69975 1.07615 1.28620 1.50733 1.25577 0.95531 1.02598 0.93580
0.85872 0.79253 0.79475 0.79380 1.19188 1.19569 1.18635 1.21298
0.89861 0.94673 1.52578 0.92043 1.19055 0.93358 0.81150 0.95453
1.45974 1.06559 1.09678 1.73746 1.20969 0.82062 0.92171 0.76041
1.90656 1.56278 1.47703 1.50769 1.22555 0.88540 0.93490 1.06892
1.71189 1.10524 1.18668 1.08462 1.24148 0.95445 0.88847 1.04623
1.23195 0.96635 0.83680 0.92952 0.88317 1.86450 1.49908 1.30345
1.70737 1.24285 0.89360 0.96080 0.98480 1.91623 1.45334 1.58611
1.32242 0.91814 0.96955 0.97617 0.75494 0.82037 0.88422 0.84136
0.90362 0.74353 0.90072 0.89447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16
2 C 0.03 1.58 5.47 84.66 0.46 2.04 16
3 Si 0.94 45.04 27.47 68.60 1.88 46.92 16
4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16
5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
6 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16
7 C -0.55 -30.64 9.83 25.60 0.25 -30.39 16
8 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16
9 C 0.23 11.85 4.50 85.63 0.38 12.23 16
10 N -0.71 -28.99 5.55 -466.80 -2.59 -31.58 16
11 C 0.50 19.63 7.69 87.66 0.67 20.30 16
12 O -0.58 -28.16 15.95 6.77 0.11 -28.05 16
13 C 0.02 0.44 5.66 85.56 0.48 0.92 16
14 N -0.32 -8.75 5.51 -509.53 -2.81 -11.56 16
15 C 0.00 -0.05 6.59 86.67 0.57 0.52 16
16 C 0.10 1.52 4.47 31.81 0.14 1.66 16
17 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16
18 O -0.57 -7.37 13.40 -148.98 -2.00 -9.37 16
19 C 0.00 -0.08 7.70 72.46 0.56 0.48 16
20 O -0.27 -8.87 11.14 -42.35 -0.47 -9.34 16
21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16
22 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16
23 H 0.01 0.32 7.57 -2.38 -0.02 0.30 16
24 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16
25 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16
26 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16
27 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16
28 H 0.08 1.31 8.01 -2.39 -0.02 1.29 16
29 H 0.40 1.60 9.11 -74.06 -0.67 0.92 16
30 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16
31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16
Total: -1.00 -78.10 270.76 -2.39 -80.49
By element:
Atomic # 1 Polarization: 10.83 SS G_CDS: -0.35 Total: 10.48 kcal
Atomic # 6 Polarization: 4.24 SS G_CDS: 3.53 Total: 7.77 kcal
Atomic # 7 Polarization: -93.80 SS G_CDS: -5.10 Total: -98.90 kcal
Atomic # 8 Polarization: -44.41 SS G_CDS: -2.36 Total: -46.77 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal
Total: -78.10 -2.39 -80.49 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308458216.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.572 kcal
(2) G-P(sol) polarization free energy of solvation -78.105 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.677 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.494 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds