Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99952 * 2 1 4 4 H 1.48504 * 109.46923 * 269.99396 * 3 2 1 5 5 H 1.48500 * 109.47142 * 29.99586 * 3 2 1 6 6 H 1.48500 * 109.47102 * 149.99608 * 3 2 1 7 7 C 1.37881 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00170 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00109 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47490 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00034 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00192 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00075 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.47548 * 174.57792 * 13 11 10 15 15 C 1.48753 * 111.00175 * 177.05359 * 14 13 11 16 16 C 1.55129 * 101.66700 * 157.59073 * 15 14 13 17 17 H 1.09007 * 110.96521 * 82.99750 * 16 15 14 18 18 O 1.42901 * 110.80123 * 206.40388 * 16 15 14 19 19 C 1.54419 * 102.52657 * 324.66595 * 16 15 14 20 20 O 1.43501 * 106.59412 * 21.25672 * 19 16 15 21 21 H 0.97002 * 120.00475 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47328 * 59.99855 * 9 7 2 23 23 H 1.09005 * 109.46919 * 300.00715 * 9 7 2 24 24 H 0.96998 * 119.99643 * 359.72754 * 10 9 7 25 25 H 1.08997 * 109.47455 * 294.57816 * 13 11 10 26 26 H 1.09005 * 109.47263 * 54.57811 * 13 11 10 27 27 H 1.09006 * 110.98404 * 275.68090 * 15 14 13 28 28 H 1.08997 * 110.98980 * 39.49569 * 15 14 13 29 29 H 0.96693 * 114.00077 * 174.55420 * 18 16 15 30 30 H 1.09000 * 110.03002 * 261.97721 * 19 16 15 31 31 H 1.08999 * 110.03854 * 140.54004 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1295 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1130 -1.8997 0.0014 13 6 5.8273 -4.2424 0.0002 14 7 7.2904 -4.2444 -0.1306 15 6 7.8297 -5.6292 -0.0640 16 6 9.1950 -5.4691 -0.7829 17 1 9.9551 -5.0942 -0.0975 18 8 9.6082 -6.7053 -1.3686 19 6 8.8780 -4.4240 -1.8747 20 8 7.7029 -3.7230 -1.4422 21 1 -0.4851 0.8400 -0.0004 22 1 3.8745 -0.6801 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 3.3695 -3.3126 0.0046 25 1 5.5454 -4.7279 0.9345 26 1 5.3869 -4.7831 -0.8375 27 1 7.9677 -5.9450 0.9701 28 1 7.1852 -6.3254 -0.6006 29 1 10.4134 -6.6391 -1.8998 30 1 8.6868 -4.9228 -2.8248 31 1 9.7107 -3.7283 -1.9787 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308458216.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -102.066473 kcal Electronic energy + Delta-G solvation = -15938.419446 eV Core-core repulsion = 13028.020727 eV Total energy + Delta-G solvation = -2910.398720 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.73152 -39.84297 -37.15938 -36.11319 -34.48552 -34.23468 -31.48094 -30.14820 -27.80257 -24.75047 -23.50071 -22.76256 -21.46076 -19.20822 -18.57425 -17.98032 -17.68705 -17.21639 -16.71432 -16.23995 -16.08422 -15.59986 -14.82071 -14.75052 -14.56204 -14.43789 -14.09859 -13.98548 -13.44638 -13.04515 -13.00714 -12.67817 -12.53973 -11.93333 -11.65626 -11.35648 -11.16366 -10.92035 -10.78397 -9.91429 -9.79557 -8.40365 -6.47079 1.32481 1.34617 1.47898 1.63933 1.77231 2.26790 2.29377 2.94061 2.95083 3.40959 3.51499 3.87487 3.93947 4.10324 4.21187 4.36274 4.43249 4.55277 4.65130 4.78113 4.84722 5.03213 5.22997 5.28936 5.53637 5.68267 6.09844 6.53693 6.72703 6.86957 7.16346 7.46053 8.74326 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.067369 B = 0.004849 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.519065 B = 5773.385400 C = 6006.218463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.234 3.766 10 N -0.708 5.708 11 C 0.501 3.499 12 O -0.575 6.575 13 C 0.017 3.983 14 N -0.319 5.319 15 C -0.003 4.003 16 C 0.096 3.904 17 H 0.099 0.901 18 O -0.566 6.566 19 C -0.004 4.004 20 O -0.275 6.275 21 H 0.273 0.727 22 H 0.013 0.987 23 H 0.006 0.994 24 H 0.409 0.591 25 H 0.162 0.838 26 H 0.098 0.902 27 H 0.141 0.859 28 H 0.078 0.922 29 H 0.405 0.595 30 H 0.081 0.919 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.144 -14.244 -1.169 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.110 3.890 10 N -0.360 5.360 11 C 0.288 3.712 12 O -0.454 6.454 13 C -0.115 4.115 14 N -0.088 5.088 15 C -0.131 4.131 16 C 0.035 3.965 17 H 0.117 0.883 18 O -0.374 6.374 19 C -0.082 4.082 20 O -0.278 6.278 21 H 0.082 0.918 22 H 0.030 0.970 23 H 0.024 0.976 24 H 0.245 0.755 25 H 0.180 0.820 26 H 0.116 0.884 27 H 0.159 0.841 28 H 0.096 0.904 29 H 0.256 0.744 30 H 0.099 0.901 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.110 -13.165 -0.609 22.398 hybrid contribution -0.240 0.262 -1.035 1.094 sum 17.870 -12.904 -1.644 22.103 Atomic orbital electron populations 1.69975 1.07615 1.28620 1.50733 1.25577 0.95531 1.02598 0.93580 0.85872 0.79253 0.79475 0.79380 1.19188 1.19569 1.18635 1.21298 0.89861 0.94673 1.52578 0.92043 1.19055 0.93358 0.81150 0.95453 1.45974 1.06559 1.09678 1.73746 1.20969 0.82062 0.92171 0.76041 1.90656 1.56278 1.47703 1.50769 1.22555 0.88540 0.93490 1.06892 1.71189 1.10524 1.18668 1.08462 1.24148 0.95445 0.88847 1.04623 1.23195 0.96635 0.83680 0.92952 0.88317 1.86450 1.49908 1.30345 1.70737 1.24285 0.89360 0.96080 0.98480 1.91623 1.45334 1.58611 1.32242 0.91814 0.96955 0.97617 0.75494 0.82037 0.88422 0.84136 0.90362 0.74353 0.90072 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 2 C 0.03 1.58 5.47 84.66 0.46 2.04 16 3 Si 0.94 45.04 27.47 68.60 1.88 46.92 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 7 C -0.55 -30.64 9.83 25.60 0.25 -30.39 16 8 H 0.06 3.58 7.84 -2.91 -0.02 3.56 16 9 C 0.23 11.85 4.50 85.63 0.38 12.23 16 10 N -0.71 -28.99 5.55 -466.80 -2.59 -31.58 16 11 C 0.50 19.63 7.69 87.66 0.67 20.30 16 12 O -0.58 -28.16 15.95 6.77 0.11 -28.05 16 13 C 0.02 0.44 5.66 85.56 0.48 0.92 16 14 N -0.32 -8.75 5.51 -509.53 -2.81 -11.56 16 15 C 0.00 -0.05 6.59 86.67 0.57 0.52 16 16 C 0.10 1.52 4.47 31.81 0.14 1.66 16 17 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 18 O -0.57 -7.37 13.40 -148.98 -2.00 -9.37 16 19 C 0.00 -0.08 7.70 72.46 0.56 0.48 16 20 O -0.27 -8.87 11.14 -42.35 -0.47 -9.34 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 23 H 0.01 0.32 7.57 -2.38 -0.02 0.30 16 24 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 25 H 0.16 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.08 1.31 8.01 -2.39 -0.02 1.29 16 29 H 0.40 1.60 9.11 -74.06 -0.67 0.92 16 30 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.10 270.76 -2.39 -80.49 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -0.35 Total: 10.48 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 3.53 Total: 7.77 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -5.10 Total: -98.90 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -2.36 Total: -46.77 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -78.10 -2.39 -80.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308458216.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.572 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds