Wall clock time and date at job start Mon Mar 30 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 120.00352 * 2 1 4 4 H 1.48493 * 109.47139 * 240.00003 * 3 2 1 5 5 H 1.48503 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47024 * 119.99599 * 3 2 1 7 7 C 1.38953 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99965 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00142 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00203 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00002 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47145 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99973 * 180.02562 * 13 12 10 15 15 H 1.08992 * 110.56438 * 32.32030 * 14 13 12 16 16 C 1.54803 * 110.60884 * 269.51286 * 14 13 12 17 17 O 1.44419 * 104.85762 * 217.51134 * 16 14 13 18 18 C 1.44430 * 105.27673 * 40.46136 * 17 16 14 19 19 C 1.54473 * 104.80417 * 319.49158 * 18 17 16 20 20 H 1.09004 * 110.51397 * 142.75839 * 19 18 17 21 21 O 1.42905 * 110.51130 * 265.32998 * 19 18 17 22 22 H 0.96994 * 119.99889 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99610 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47105 * 60.00004 * 12 10 9 25 25 H 1.08996 * 109.46918 * 300.00304 * 12 10 9 26 26 H 1.00902 * 111.00319 * 303.95479 * 13 12 10 27 27 H 1.08997 * 110.38178 * 98.64280 * 16 14 13 28 28 H 1.09002 * 110.39840 * 336.39014 * 16 14 13 29 29 H 1.08998 * 110.37310 * 200.65429 * 18 17 16 30 30 H 1.08999 * 110.46079 * 78.36658 * 18 17 16 31 31 H 0.96697 * 113.99904 * 296.69755 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4978 -7.2709 0.0026 15 1 0.5574 -7.1964 -0.5433 16 6 1.2483 -7.7555 1.4515 17 8 1.4389 -9.1862 1.4015 18 6 2.5804 -9.3881 0.5400 19 6 2.3928 -8.3722 -0.6084 20 1 3.3541 -7.9580 -0.9128 21 8 1.7399 -8.9883 -1.7203 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 0.6173 -4.9213 -0.8880 25 1 0.6166 -4.9201 0.8919 26 1 2.8331 -5.9129 -0.7787 27 1 0.2303 -7.5189 1.7610 28 1 1.9669 -7.3006 2.1333 29 1 2.5858 -10.4057 0.1494 30 1 3.5055 -9.1846 1.0793 31 1 2.2451 -9.7072 -2.1241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323164727.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:29 Heat of formation + Delta-G solvation = -124.181232 kcal Electronic energy + Delta-G solvation = -15955.324486 eV Core-core repulsion = 13043.966798 eV Total energy + Delta-G solvation = -2911.357688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87141 -38.19330 -36.20150 -35.10087 -33.83164 -31.26186 -29.84762 -28.50599 -26.15703 -24.09005 -22.75565 -20.83058 -19.30523 -17.95248 -17.44876 -16.68765 -16.25685 -15.69907 -15.54413 -14.93988 -14.46250 -14.20887 -13.70734 -13.55581 -13.17479 -12.80781 -12.48122 -12.06748 -11.69424 -11.60066 -11.46141 -11.04404 -10.85083 -10.45206 -10.37834 -10.22884 -9.75353 -9.51912 -8.52634 -8.20549 -7.98531 -6.43147 -3.84299 3.19323 3.25286 3.29412 3.66324 3.84227 3.88119 4.16493 4.29272 4.54530 4.64821 4.90606 5.09617 5.22390 5.26870 5.40376 5.42778 5.49351 5.69784 5.79526 5.87661 5.92955 6.22930 6.57055 7.09186 7.35602 7.53123 7.53622 8.03772 8.58824 9.15695 9.51778 10.02808 10.74450 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062449 B = 0.004692 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.259425 B = 5966.465438 C = 6032.122021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.049 3.951 13 N -0.656 5.656 14 C 0.058 3.942 15 H 0.073 0.927 16 C 0.054 3.946 17 O -0.373 6.373 18 C 0.021 3.979 19 C 0.066 3.934 20 H 0.081 0.919 21 O -0.559 6.559 22 H 0.272 0.728 23 H 0.393 0.607 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.353 0.647 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -14.916 -0.940 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.084 4.084 13 N -0.290 5.290 14 C -0.053 4.053 15 H 0.091 0.909 16 C -0.023 4.023 17 O -0.292 6.292 18 C -0.056 4.056 19 C 0.006 3.994 20 H 0.098 0.902 21 O -0.364 6.364 22 H 0.082 0.918 23 H 0.226 0.774 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.174 0.826 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.293 -14.452 -0.010 14.510 hybrid contribution -0.017 0.609 -1.144 1.296 sum 1.276 -13.843 -1.154 13.950 Atomic orbital electron populations 1.69606 1.05957 1.28336 1.50332 1.25272 0.95636 0.99754 0.97199 0.85901 0.78755 0.80385 0.79082 1.19911 1.20952 1.19852 1.19661 0.93358 0.82211 1.47849 0.87942 1.41851 1.09240 1.04575 1.64139 1.19734 0.88352 0.84650 0.84701 1.90520 1.13715 1.87042 1.55600 1.21768 0.94305 0.90765 1.01513 1.60225 1.18480 0.99027 1.51315 1.22917 0.97003 0.89117 0.96255 0.90936 1.23601 1.02666 0.80392 0.95649 1.89120 1.48460 1.23021 1.68550 1.24059 0.90445 0.99806 0.91324 1.23367 0.95897 0.93293 0.86841 0.90156 1.86563 1.49164 1.53664 1.47048 0.91767 0.77399 0.93425 0.89401 0.82592 0.88867 0.90359 0.88946 0.91122 0.77337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.37 7.82 -10.99 -0.09 10.29 16 11 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 12 C 0.05 0.87 6.03 -4.98 -0.03 0.84 16 13 N -0.66 -10.58 5.94 -106.15 -0.63 -11.21 16 14 C 0.06 0.79 3.27 -65.97 -0.22 0.57 16 15 H 0.07 1.03 7.68 -51.93 -0.40 0.64 16 16 C 0.05 0.71 7.36 38.11 0.28 0.99 16 17 O -0.37 -5.03 11.65 -35.23 -0.41 -5.44 16 18 C 0.02 0.22 7.38 37.93 0.28 0.50 16 19 C 0.07 0.75 4.16 -25.16 -0.10 0.64 16 20 H 0.08 0.85 7.55 -51.93 -0.39 0.46 16 21 O -0.56 -6.17 13.30 -35.23 -0.47 -6.63 16 22 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 23 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 24 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 25 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.35 5.84 7.77 -39.29 -0.31 5.53 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 29 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.38 2.28 9.12 45.56 0.42 2.70 16 LS Contribution 271.22 15.07 4.09 4.09 Total: -1.00 -32.51 271.22 -4.85 -37.36 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -3.04 Total: 13.81 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.12 Total: 5.81 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.04 Total: -49.28 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.79 Total: -27.76 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.51 -4.85 -37.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323164727.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.824 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds