Wall clock time and date at job start Mon Mar 30 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 120.00352 * 2 1 4 4 H 1.48493 * 109.47139 * 240.00003 * 3 2 1 5 5 H 1.48503 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47024 * 119.99599 * 3 2 1 7 7 C 1.38953 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99965 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00251 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00142 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00203 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00002 * 179.97438 * 10 9 7 13 13 N 1.46893 * 109.47145 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99973 * 180.02562 * 13 12 10 15 15 H 1.08992 * 110.56438 * 32.32030 * 14 13 12 16 16 C 1.54803 * 110.60884 * 269.51286 * 14 13 12 17 17 O 1.44419 * 104.85762 * 217.51134 * 16 14 13 18 18 C 1.44430 * 105.27673 * 40.46136 * 17 16 14 19 19 C 1.54473 * 104.80417 * 319.49158 * 18 17 16 20 20 H 1.09004 * 110.51397 * 142.75839 * 19 18 17 21 21 O 1.42905 * 110.51130 * 265.32998 * 19 18 17 22 22 H 0.96994 * 119.99889 * 0.02562 * 1 2 3 23 23 H 0.97005 * 119.99610 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47105 * 60.00004 * 12 10 9 25 25 H 1.08996 * 109.46918 * 300.00304 * 12 10 9 26 26 H 1.00902 * 111.00319 * 303.95479 * 13 12 10 27 27 H 1.08997 * 110.38178 * 98.64280 * 16 14 13 28 28 H 1.09002 * 110.39840 * 336.39014 * 16 14 13 29 29 H 1.08998 * 110.37310 * 200.65429 * 18 17 16 30 30 H 1.08999 * 110.46079 * 78.36658 * 18 17 16 31 31 H 0.96697 * 113.99904 * 296.69755 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6962 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2035 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4978 -7.2709 0.0026 15 1 0.5574 -7.1964 -0.5433 16 6 1.2483 -7.7555 1.4515 17 8 1.4389 -9.1862 1.4015 18 6 2.5804 -9.3881 0.5400 19 6 2.3928 -8.3722 -0.6084 20 1 3.3541 -7.9580 -0.9128 21 8 1.7399 -8.9883 -1.7203 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 0.6173 -4.9213 -0.8880 25 1 0.6166 -4.9201 0.8919 26 1 2.8331 -5.9129 -0.7787 27 1 0.2303 -7.5189 1.7610 28 1 1.9669 -7.3006 2.1333 29 1 2.5858 -10.4057 0.1494 30 1 3.5055 -9.1846 1.0793 31 1 2.2451 -9.7072 -2.1241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323164727.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:28 Heat of formation + Delta-G solvation = -153.734835 kcal Electronic energy + Delta-G solvation = -15956.606026 eV Core-core repulsion = 13043.966798 eV Total energy + Delta-G solvation = -2912.639228 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88814 -40.01380 -37.06996 -36.50459 -35.74587 -33.28820 -31.01982 -29.46558 -27.79440 -25.78758 -23.73896 -21.86883 -21.12306 -19.93907 -18.37182 -18.04880 -17.22618 -17.06972 -16.86016 -16.49479 -16.01873 -15.81862 -15.25760 -14.83062 -14.34855 -14.14688 -13.80792 -13.49655 -13.22440 -12.93557 -12.86244 -12.65021 -12.43710 -12.12214 -11.83556 -11.51094 -11.23288 -10.68295 -10.38132 -10.03392 -9.54131 -8.47287 -5.96546 1.40113 1.42406 1.53409 2.02412 2.27335 2.60425 2.97522 3.19595 3.26181 3.32023 3.70706 3.79392 3.99025 4.22472 4.27305 4.39880 4.48779 4.53005 4.63084 4.72816 4.77438 4.85954 5.40056 5.58409 5.83049 6.03189 6.21564 6.57919 6.80811 7.10834 7.53761 8.08327 8.69874 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062449 B = 0.004692 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.259425 B = 5966.465438 C = 6032.122021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.571 5.571 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.063 3.937 13 N -0.662 5.662 14 C 0.056 3.944 15 H 0.068 0.932 16 C 0.056 3.944 17 O -0.390 6.390 18 C 0.019 3.981 19 C 0.071 3.929 20 H 0.087 0.913 21 O -0.574 6.574 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.350 0.650 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 -15.529 -1.108 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.098 0.902 9 N -0.208 5.208 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.069 4.069 13 N -0.297 5.297 14 C -0.054 4.054 15 H 0.086 0.914 16 C -0.021 4.021 17 O -0.309 6.309 18 C -0.057 4.057 19 C 0.011 3.989 20 H 0.105 0.895 21 O -0.383 6.383 22 H 0.088 0.912 23 H 0.231 0.769 24 H 0.085 0.915 25 H 0.125 0.875 26 H 0.170 0.830 27 H 0.120 0.880 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.117 -15.102 -0.185 15.145 hybrid contribution 0.045 0.707 -1.115 1.322 sum 1.162 -14.395 -1.301 14.500 Atomic orbital electron populations 1.69669 1.06890 1.29447 1.50082 1.26058 0.96532 1.02467 0.96111 0.84970 0.77746 0.76527 0.78986 1.19640 1.19511 1.19667 1.19654 0.92772 0.83966 1.50180 0.90168 1.41922 1.09379 1.04710 1.64823 1.20731 0.88221 0.86009 0.82465 1.90488 1.15691 1.87909 1.56758 1.21629 0.93986 0.88027 1.03281 1.60203 1.18480 0.99668 1.51330 1.22940 0.97055 0.88484 0.96955 0.91372 1.23566 1.03011 0.80479 0.95093 1.89102 1.49650 1.22879 1.69254 1.24251 0.89873 1.00976 0.90647 1.23258 0.95432 0.92904 0.87315 0.89488 1.86507 1.50068 1.54748 1.47004 0.91240 0.76936 0.91547 0.87485 0.83018 0.87988 0.91144 0.86483 0.90284 0.74812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 2 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.34 -19.05 9.68 84.04 0.81 -18.24 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -29.28 5.29 -306.98 -1.62 -30.91 16 10 C 0.44 20.75 7.82 87.66 0.69 21.44 16 11 O -0.62 -34.10 15.78 -3.06 -0.05 -34.15 16 12 C 0.06 2.16 6.03 85.56 0.52 2.68 16 13 N -0.66 -20.68 5.94 -489.76 -2.91 -23.59 16 14 C 0.06 1.43 3.27 46.04 0.15 1.58 16 15 H 0.07 1.83 7.68 -2.39 -0.02 1.81 16 16 C 0.06 1.38 7.36 72.60 0.53 1.92 16 17 O -0.39 -9.81 11.65 -148.98 -1.74 -11.54 16 18 C 0.02 0.36 7.38 72.48 0.53 0.90 16 19 C 0.07 1.46 4.16 31.61 0.13 1.59 16 20 H 0.09 1.69 7.55 -2.39 -0.02 1.67 16 21 O -0.57 -11.34 13.30 -148.98 -1.98 -13.32 16 22 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 23 H 0.40 19.32 7.90 -92.70 -0.73 18.59 16 24 H 0.07 2.06 8.08 -2.39 -0.02 2.04 16 25 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.35 11.31 7.77 -89.69 -0.70 10.62 16 27 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.07 1.84 8.07 -2.39 -0.02 1.82 16 29 H 0.12 1.57 8.09 -2.39 -0.02 1.55 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.40 3.76 9.12 -74.06 -0.68 3.08 16 Total: -1.00 -69.03 271.22 -3.08 -72.11 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.93 Total: 34.29 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 3.83 Total: 11.71 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -4.25 Total: -103.82 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -3.77 Total: -59.01 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.03 -3.08 -72.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323164727.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.626 kcal (2) G-P(sol) polarization free energy of solvation -69.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds