Wall clock time and date at job start Mon Mar 30 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53002 * 109.47186 * 240.00111 * 2 1 3 5 5 O 1.42891 * 109.46994 * 59.99962 * 4 2 1 6 6 S 1.81401 * 109.47033 * 119.99851 * 2 1 3 7 7 C 1.81397 * 103.00062 * 300.00226 * 6 2 1 8 8 C 1.53005 * 109.47309 * 179.97438 * 7 6 2 9 9 C 1.50691 * 115.55016 * 297.18528 * 8 7 6 10 10 H 1.08005 * 120.00374 * 95.13344 * 9 8 7 11 11 C 1.37878 * 119.99851 * 274.86064 * 9 8 7 12 12 N 1.31510 * 120.00256 * 7.00167 * 11 9 8 13 13 Si 1.86806 * 120.00181 * 187.00455 * 11 9 8 14 14 H 1.48501 * 109.47140 * 59.99587 * 13 11 9 15 15 H 1.48495 * 109.47389 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46791 * 299.99924 * 13 11 9 17 17 C 1.52999 * 117.49659 * 82.84993 * 8 7 6 18 18 C 1.52997 * 117.49847 * 151.50792 * 8 7 6 19 19 H 1.08996 * 109.47368 * 299.99463 * 1 2 3 20 20 H 1.08994 * 109.47009 * 60.00077 * 1 2 3 21 21 H 1.09003 * 109.46802 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47264 * 179.97438 * 3 2 1 23 23 H 1.08998 * 109.47606 * 300.00134 * 3 2 1 24 24 H 1.09003 * 109.46973 * 59.99910 * 3 2 1 25 25 H 1.09003 * 109.46563 * 179.97438 * 4 2 1 26 26 H 1.08996 * 109.46970 * 299.99919 * 4 2 1 27 27 H 0.96707 * 114.00072 * 180.02562 * 5 4 2 28 28 H 1.09000 * 109.47388 * 60.00490 * 7 6 2 29 29 H 1.08998 * 109.47213 * 300.00071 * 7 6 2 30 30 H 0.96999 * 120.00699 * 181.74528 * 12 11 9 31 31 H 1.08999 * 117.49948 * 215.00628 * 17 8 7 32 32 H 1.09008 * 117.49742 * 0.02600 * 17 8 7 33 33 H 1.08994 * 117.49992 * 359.97438 * 18 8 7 34 34 H 1.08999 * 117.49450 * 144.97578 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 1.5638 -0.0476 -2.4159 6 16 2.1347 -0.8551 1.4812 7 6 1.4375 0.1309 2.8348 8 6 1.8624 -0.4712 4.1757 9 6 1.3694 -1.8693 4.4458 10 1 1.9984 -2.7172 4.2177 11 6 0.1176 -2.0660 4.9892 12 7 -0.6995 -1.0473 5.1442 13 14 -0.4178 -3.7796 5.5056 14 1 0.5094 -4.2960 6.5442 15 1 -1.7960 -3.7229 6.0556 16 1 -0.3927 -4.6822 4.3266 17 6 3.2437 -0.0929 4.7138 18 6 1.9839 0.4780 5.3694 19 1 -0.3634 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1299 1.4426 0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 3.1301 -0.7208 -1.2494 26 1 1.6768 -1.7489 -1.2493 27 1 1.8488 -0.4513 -3.2472 28 1 0.3498 0.1275 2.7639 29 1 1.8031 1.1552 2.7639 30 1 -1.5704 -1.1812 5.5498 31 1 3.7959 -0.8553 5.2632 32 1 3.8496 0.5852 4.1128 33 1 1.7615 1.5314 5.1995 34 1 1.7068 0.0913 6.3501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381897572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:01 Heat of formation + Delta-G solvation = -41.077771 kcal Electronic energy + Delta-G solvation = -14520.148447 eV Core-core repulsion = 12158.687611 eV Total energy + Delta-G solvation = -2361.460837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.54686 -36.55589 -34.04662 -31.91743 -27.80030 -27.02379 -25.94620 -25.19648 -21.10972 -20.22408 -19.11267 -17.53603 -16.22576 -14.99497 -14.87346 -14.60118 -14.35971 -13.79592 -13.66017 -13.06068 -12.70093 -12.52481 -12.21850 -11.74500 -11.43502 -11.16276 -10.93656 -10.90325 -10.84460 -10.54464 -10.45246 -10.12437 -9.91230 -9.62763 -9.05358 -8.78947 -8.41849 -7.99819 -6.77216 -6.02756 -4.06946 2.32774 3.33729 3.37598 3.41336 3.51509 4.43424 4.46506 4.98051 5.10531 5.27130 5.38716 5.41102 5.63081 5.74750 5.93206 6.01247 6.08955 6.14753 6.18694 6.24873 6.37773 6.48292 6.55597 6.57978 6.75452 6.84914 7.07747 7.42313 7.49966 7.63442 7.90496 8.42093 8.93788 9.58559 11.06693 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.008287 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.648505 B = 3378.033012 C = 3835.285130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.048 4.048 3 C -0.135 4.135 4 C 0.105 3.895 5 O -0.569 6.569 6 S -0.234 6.234 7 C -0.020 4.020 8 C 0.056 3.944 9 C -0.486 4.486 10 H 0.061 0.939 11 C 0.073 3.927 12 N -0.881 5.881 13 Si 0.888 3.112 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.205 4.205 18 C -0.150 4.150 19 H 0.058 0.942 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.376 0.624 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.260 0.740 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 2.717 -10.040 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.193 4.193 4 C 0.026 3.974 5 O -0.374 6.374 6 S -0.005 6.005 7 C -0.168 4.168 8 C 0.054 3.946 9 C -0.523 4.523 10 H 0.080 0.920 11 C -0.130 4.130 12 N -0.518 5.518 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.243 4.243 18 C -0.190 4.190 19 H 0.077 0.923 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.222 0.778 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.936 2.230 -9.506 10.527 hybrid contribution -0.934 -0.138 -0.044 0.945 sum 3.002 2.091 -9.550 10.227 Atomic orbital electron populations 1.21961 0.92701 1.02780 1.01880 1.22640 0.99138 0.98310 0.95642 1.21987 1.01107 0.94319 1.01927 1.21836 0.97198 0.94509 0.83872 1.86457 1.77694 1.57439 1.15826 1.86657 1.69939 1.44991 0.98883 1.23095 1.02940 0.96216 0.94575 1.18451 0.93117 0.95207 0.87785 1.20318 1.00348 0.89786 1.41883 0.92045 1.24935 0.96139 0.96615 0.95326 1.69992 1.08272 1.30345 1.43183 0.86714 0.77505 0.85078 0.79102 1.20277 1.21380 1.20032 1.23021 0.91874 1.03478 1.05924 1.22583 1.00619 0.96707 0.99087 0.92298 0.92079 0.91852 0.92197 0.91875 0.92624 0.93132 0.92866 0.77783 0.89648 0.93454 0.93047 0.90307 0.91466 0.91909 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.17 37.16 0.30 -1.96 16 2 C -0.05 -0.78 0.79 -90.62 -0.07 -0.86 16 3 C -0.13 -2.06 8.17 37.16 0.30 -1.76 16 4 C 0.10 1.46 5.92 37.16 0.22 1.68 16 5 O -0.57 -7.02 12.31 -35.23 -0.43 -7.46 16 6 S -0.23 -4.74 20.27 -107.50 -2.18 -6.92 16 7 C -0.02 -0.45 4.92 37.16 0.18 -0.27 16 8 C 0.06 1.37 1.36 -155.66 -0.21 1.16 16 9 C -0.49 -13.18 8.40 -34.44 -0.29 -13.47 16 10 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 11 C 0.07 1.99 5.38 -17.82 -0.10 1.89 16 12 N -0.88 -24.66 12.95 55.43 0.72 -23.94 16 13 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.21 -4.52 9.96 -26.70 -0.27 -4.79 16 18 C -0.15 -3.50 9.46 -26.70 -0.25 -3.75 16 19 H 0.06 1.06 6.68 -51.93 -0.35 0.71 16 20 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 24 H 0.05 0.88 6.68 -51.93 -0.35 0.54 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.38 2.77 9.12 45.56 0.42 3.18 16 28 H 0.09 2.09 7.00 -51.92 -0.36 1.73 16 29 H 0.05 0.98 6.96 -51.93 -0.36 0.62 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 291.99 15.07 4.40 4.40 Total: -1.00 -28.86 291.99 -7.42 -36.28 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.73 Total: 3.52 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -0.18 Total: -22.11 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.72 Total: -23.94 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.43 Total: -7.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.18 Total: -6.92 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.86 -7.42 -36.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381897572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.799 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds