Wall clock time and date at job start Mon Mar 30 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46896 * 2 1 4 4 C 1.53002 * 109.47186 * 240.00111 * 2 1 3 5 5 O 1.42891 * 109.46994 * 59.99962 * 4 2 1 6 6 S 1.81401 * 109.47033 * 119.99851 * 2 1 3 7 7 C 1.81397 * 103.00062 * 300.00226 * 6 2 1 8 8 C 1.53005 * 109.47309 * 179.97438 * 7 6 2 9 9 C 1.50691 * 115.55016 * 297.18528 * 8 7 6 10 10 H 1.08005 * 120.00374 * 95.13344 * 9 8 7 11 11 C 1.37878 * 119.99851 * 274.86064 * 9 8 7 12 12 N 1.31510 * 120.00256 * 7.00167 * 11 9 8 13 13 Si 1.86806 * 120.00181 * 187.00455 * 11 9 8 14 14 H 1.48501 * 109.47140 * 59.99587 * 13 11 9 15 15 H 1.48495 * 109.47389 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46791 * 299.99924 * 13 11 9 17 17 C 1.52999 * 117.49659 * 82.84993 * 8 7 6 18 18 C 1.52997 * 117.49847 * 151.50792 * 8 7 6 19 19 H 1.08996 * 109.47368 * 299.99463 * 1 2 3 20 20 H 1.08994 * 109.47009 * 60.00077 * 1 2 3 21 21 H 1.09003 * 109.46802 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47264 * 179.97438 * 3 2 1 23 23 H 1.08998 * 109.47606 * 300.00134 * 3 2 1 24 24 H 1.09003 * 109.46973 * 59.99910 * 3 2 1 25 25 H 1.09003 * 109.46563 * 179.97438 * 4 2 1 26 26 H 1.08996 * 109.46970 * 299.99919 * 4 2 1 27 27 H 0.96707 * 114.00072 * 180.02562 * 5 4 2 28 28 H 1.09000 * 109.47388 * 60.00490 * 7 6 2 29 29 H 1.08998 * 109.47213 * 300.00071 * 7 6 2 30 30 H 0.96999 * 120.00699 * 181.74528 * 12 11 9 31 31 H 1.08999 * 117.49948 * 215.00628 * 17 8 7 32 32 H 1.09008 * 117.49742 * 0.02600 * 17 8 7 33 33 H 1.08994 * 117.49992 * 359.97438 * 18 8 7 34 34 H 1.08999 * 117.49450 * 144.97578 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 1.5638 -0.0476 -2.4159 6 16 2.1347 -0.8551 1.4812 7 6 1.4375 0.1309 2.8348 8 6 1.8624 -0.4712 4.1757 9 6 1.3694 -1.8693 4.4458 10 1 1.9984 -2.7172 4.2177 11 6 0.1176 -2.0660 4.9892 12 7 -0.6995 -1.0473 5.1442 13 14 -0.4178 -3.7796 5.5056 14 1 0.5094 -4.2960 6.5442 15 1 -1.7960 -3.7229 6.0556 16 1 -0.3927 -4.6822 4.3266 17 6 3.2437 -0.0929 4.7138 18 6 1.9839 0.4780 5.3694 19 1 -0.3634 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1299 1.4426 0.0005 23 1 1.6767 1.9564 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 3.1301 -0.7208 -1.2494 26 1 1.6768 -1.7489 -1.2493 27 1 1.8488 -0.4513 -3.2472 28 1 0.3498 0.1275 2.7639 29 1 1.8031 1.1552 2.7639 30 1 -1.5704 -1.1812 5.5498 31 1 3.7959 -0.8553 5.2632 32 1 3.8496 0.5852 4.1128 33 1 1.7615 1.5314 5.1995 34 1 1.7068 0.0913 6.3501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381897572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:01 Heat of formation + Delta-G solvation = -58.446439 kcal Electronic energy + Delta-G solvation = -14520.901609 eV Core-core repulsion = 12158.687611 eV Total energy + Delta-G solvation = -2362.213999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.64163 -38.41770 -35.21151 -33.98466 -29.52360 -28.31347 -27.49361 -26.92373 -22.93187 -21.64113 -20.90100 -18.60356 -18.11687 -16.68276 -16.47490 -15.98259 -15.68211 -15.55442 -15.24145 -14.73121 -14.14391 -13.73247 -13.71760 -13.50126 -13.08247 -12.87172 -12.73427 -12.63171 -12.35788 -12.19067 -12.00044 -11.73568 -11.50702 -10.91740 -10.80335 -10.54560 -10.41445 -9.84229 -8.39341 -8.09925 -6.19027 0.83949 1.42420 1.42911 1.50011 1.91258 2.44392 3.19502 3.41266 3.54382 3.74580 3.97784 4.15738 4.22948 4.41325 4.50770 4.58581 4.62497 4.68035 4.72062 4.84645 4.87586 4.92519 4.96807 5.00299 5.18672 5.24123 5.25995 5.60907 5.62545 5.78944 6.40124 6.84215 6.91317 7.48352 8.98371 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029602 B = 0.008287 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.648505 B = 3378.033012 C = 3835.285130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.041 4.041 3 C -0.129 4.129 4 C 0.113 3.887 5 O -0.575 6.575 6 S -0.259 6.259 7 C -0.008 4.008 8 C 0.028 3.972 9 C -0.497 4.497 10 H 0.048 0.952 11 C 0.030 3.970 12 N -0.905 5.905 13 Si 0.942 3.058 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.183 4.183 18 C -0.153 4.153 19 H 0.039 0.961 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.400 0.600 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 2.841 -11.396 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C -0.188 4.188 4 C 0.034 3.966 5 O -0.384 6.384 6 S -0.030 6.030 7 C -0.156 4.156 8 C 0.027 3.973 9 C -0.535 4.535 10 H 0.066 0.934 11 C -0.170 4.170 12 N -0.543 5.543 13 Si 0.768 3.232 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.199 1.199 17 C -0.220 4.220 18 C -0.193 4.193 19 H 0.058 0.942 20 H 0.096 0.904 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.250 0.750 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.684 2.345 -10.874 12.070 hybrid contribution -1.150 -0.162 0.281 1.195 sum 3.533 2.183 -10.594 11.379 Atomic orbital electron populations 1.21899 0.93145 1.02087 1.01709 1.22734 0.98686 0.98997 0.94706 1.21933 1.01583 0.93211 1.02028 1.21626 0.97654 0.93948 0.83412 1.86390 1.77872 1.57644 1.16500 1.86571 1.69802 1.46165 1.00452 1.22767 1.01044 0.97111 0.94681 1.18566 0.95172 0.94511 0.89083 1.20505 1.00355 0.90859 1.41764 0.93399 1.25555 0.96278 0.99642 0.95545 1.70084 1.08426 1.31838 1.43941 0.85863 0.77207 0.81399 0.78708 1.19821 1.20997 1.19940 1.23005 0.91038 1.03117 1.04821 1.22513 1.01800 0.97195 0.97826 0.94186 0.90362 0.92836 0.91376 0.90519 0.93659 0.92036 0.93010 0.74976 0.92648 0.92104 0.93195 0.90428 0.89095 0.90550 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.17 71.98 0.59 -3.65 16 2 C -0.04 -1.30 0.79 -10.79 -0.01 -1.31 16 3 C -0.13 -3.65 8.17 71.98 0.59 -3.06 16 4 C 0.11 2.85 5.92 71.98 0.43 3.28 16 5 O -0.58 -12.27 12.31 -148.98 -1.83 -14.11 16 6 S -0.26 -10.31 20.27 -56.49 -1.15 -11.45 16 7 C -0.01 -0.34 4.92 71.98 0.35 0.01 16 8 C 0.03 1.38 1.36 -52.93 -0.07 1.31 16 9 C -0.50 -27.22 8.40 25.60 0.22 -27.01 16 10 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 11 C 0.03 1.66 5.38 84.66 0.46 2.12 16 12 N -0.91 -51.37 12.95 21.45 0.28 -51.09 16 13 Si 0.94 43.87 29.54 68.60 2.03 45.90 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 17 C -0.18 -7.82 9.96 30.62 0.30 -7.51 16 18 C -0.15 -7.12 9.46 30.62 0.29 -6.83 16 19 H 0.04 1.44 6.68 -2.39 -0.02 1.42 16 20 H 0.08 2.27 7.68 -2.39 -0.02 2.25 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 23 H 0.08 1.98 7.68 -2.39 -0.02 1.97 16 24 H 0.04 1.36 6.68 -2.39 -0.02 1.35 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.40 4.43 9.12 -74.05 -0.68 3.75 16 28 H 0.05 2.77 7.00 -2.39 -0.02 2.76 16 29 H 0.06 2.49 6.96 -2.39 -0.02 2.47 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 33 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.06 3.14 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -60.74 291.99 2.86 -57.88 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.39 Total: 15.54 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.14 Total: -42.66 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.28 Total: -51.09 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.83 Total: -14.11 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -10.31 SS G_CDS: -1.15 Total: -11.45 kcal Total: -60.74 2.86 -57.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381897572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.566 kcal (2) G-P(sol) polarization free energy of solvation -60.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds