Wall clock time and date at job start Mon Mar 30 2020 03:18:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86801 * 119.99808 * 2 1
4 4 H 1.48506 * 109.46872 * 269.99690 * 3 2 1
5 5 H 1.48500 * 109.47282 * 29.99244 * 3 2 1
6 6 H 1.48499 * 109.47288 * 149.99845 * 3 2 1
7 7 C 1.37875 * 120.00036 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99545 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00114 * 0.02562 * 7 2 1
10 10 C 1.52998 * 109.46951 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.46723 * 180.02562 * 10 9 7
12 12 S 1.81407 * 109.46849 * 180.02562 * 11 10 9
13 13 C 1.81403 * 103.00104 * 180.02562 * 12 11 10
14 14 C 1.52996 * 109.47285 * 180.02562 * 13 12 11
15 15 C 1.52996 * 109.47138 * 180.02562 * 14 13 12
16 16 O 1.42906 * 115.55051 * 325.66650 * 15 14 13
17 17 C 1.53000 * 117.49997 * 179.97438 * 15 14 13
18 18 C 1.53002 * 60.02940 * 252.49592 * 17 15 14
19 19 H 0.97003 * 119.99880 * 0.02562 * 1 2 3
20 20 H 1.08997 * 109.46803 * 60.00079 * 9 7 2
21 21 H 1.08997 * 109.47016 * 300.00348 * 9 7 2
22 22 H 1.08997 * 109.47142 * 60.00484 * 10 9 7
23 23 H 1.08997 * 109.47705 * 300.00123 * 10 9 7
24 24 H 1.08993 * 109.47483 * 60.00335 * 11 10 9
25 25 H 1.09003 * 109.47354 * 300.00069 * 11 10 9
26 26 H 1.09001 * 109.47040 * 59.99580 * 13 12 11
27 27 H 1.09004 * 109.47090 * 300.00019 * 13 12 11
28 28 H 1.08996 * 109.47198 * 59.99390 * 14 13 12
29 29 H 1.08998 * 109.46791 * 299.99596 * 14 13 12
30 30 H 0.96704 * 113.99690 * 34.32990 * 16 15 14
31 31 H 1.09002 * 117.49833 * 359.97438 * 17 15 14
32 32 H 1.09002 * 117.49953 * 144.99738 * 17 15 14
33 33 H 1.09000 * 117.49996 * 107.50493 * 18 17 15
34 34 H 1.08999 * 117.49664 * 252.51862 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0464 -1.4002
5 1 1.4465 2.6528 0.6999
6 1 3.5467 1.4403 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2454 -3.6620 0.0005
11 6 1.4804 -4.9870 -0.0001
12 16 2.6593 -6.3658 0.0007
13 6 1.5810 -7.8246 -0.0010
14 6 2.4379 -9.0922 0.0001
15 6 1.5285 -10.3225 -0.0020
16 8 0.3046 -10.1856 0.7231
17 6 2.1999 -11.6973 -0.0018
18 6 1.5081 -11.1847 -1.2666
19 1 -0.4850 0.8401 -0.0004
20 1 0.6248 -2.5571 -0.8897
21 1 0.6241 -2.5567 0.8902
22 1 2.8720 -3.6043 0.8905
23 1 2.8721 -3.6043 -0.8894
24 1 0.8541 -5.0446 -0.8903
25 1 0.8534 -5.0451 0.8896
26 1 0.9528 -7.8111 -0.8916
27 1 0.9509 -7.8117 0.8883
28 1 3.0659 -9.1054 0.8909
29 1 3.0682 -9.1053 -0.8890
30 1 -0.0754 -9.2970 0.6889
31 1 3.2896 -11.7252 -0.0007
32 1 1.7084 -12.4975 0.5516
33 1 2.1426 -10.8754 -2.0972
34 1 0.5613 -11.6474 -1.5450
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000388300485.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:26
Heat of formation + Delta-G solvation = -69.307070 kcal
Electronic energy + Delta-G solvation = -13254.457908 eV
Core-core repulsion = 10891.772958 eV
Total energy + Delta-G solvation = -2362.684951 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.80301 -36.37056 -35.12856 -34.05319 -33.21514 -29.44056 -25.86251 -24.88726
-23.37909 -22.09996 -21.33049 -18.56828 -18.31681 -17.13600 -16.60041 -16.46609
-16.05034 -15.61851 -15.38823 -14.64553 -14.41281 -14.07911 -13.68132 -13.47561
-13.30302 -12.81556 -12.75102 -12.67947 -12.55184 -12.36513 -12.18820 -11.66056
-11.54967 -11.31741 -11.03295 -10.89700 -10.57045 -10.23485 -8.68325 -8.22047
-6.33102 0.63337 1.40444 1.41426 1.52851 1.62704 2.40624 2.71516
3.04569 3.11467 3.54632 3.79209 3.84974 4.03031 4.05671 4.09837
4.33133 4.49746 4.58876 4.70824 4.72573 4.80892 4.87907 4.96312
4.97579 5.00774 5.12575 5.21058 5.48083 5.67257 5.81354 6.21490
6.63893 6.82680 7.36262 8.89701
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.082525 B = 0.003529 C = 0.003445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 339.207729 B = 7931.492406 C = 8124.748067
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.001 3.999
3 Si 0.965 3.035
4 H -0.272 1.272
5 H -0.281 1.281
6 H -0.264 1.264
7 C -0.546 4.546
8 H 0.059 0.941
9 C 0.030 3.970
10 C -0.082 4.082
11 C -0.068 4.068
12 S -0.289 6.289
13 C -0.087 4.087
14 C -0.081 4.081
15 C 0.048 3.952
16 O -0.549 6.549
17 C -0.160 4.160
18 C -0.195 4.195
19 H 0.265 0.735
20 H -0.003 1.003
21 H -0.003 1.003
22 H 0.054 0.946
23 H 0.055 0.945
24 H 0.081 0.919
25 H 0.080 0.920
26 H 0.093 0.907
27 H 0.093 0.907
28 H 0.081 0.919
29 H 0.092 0.908
30 H 0.390 0.610
31 H 0.119 0.881
32 H 0.098 0.902
33 H 0.112 0.888
34 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.495 -20.481 -1.201 20.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.197 4.197
3 Si 0.789 3.211
4 H -0.197 1.197
5 H -0.206 1.206
6 H -0.188 1.188
7 C -0.584 4.584
8 H 0.077 0.923
9 C -0.008 4.008
10 C -0.121 4.121
11 C -0.216 4.216
12 S -0.061 6.061
13 C -0.235 4.235
14 C -0.119 4.119
15 C 0.005 3.995
16 O -0.358 6.358
17 C -0.197 4.197
18 C -0.233 4.233
19 H 0.073 0.927
20 H 0.015 0.985
21 H 0.015 0.985
22 H 0.073 0.927
23 H 0.074 0.926
24 H 0.099 0.901
25 H 0.099 0.901
26 H 0.112 0.888
27 H 0.111 0.889
28 H 0.099 0.901
29 H 0.111 0.889
30 H 0.241 0.759
31 H 0.138 0.862
32 H 0.116 0.884
33 H 0.130 0.870
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 4.562 -20.954 -1.069 21.471
hybrid contribution -1.438 1.564 -0.068 2.126
sum 3.123 -19.389 -1.137 19.672
Atomic orbital electron populations
1.70085 1.07725 1.27870 1.51543 1.25963 0.95798 1.03319 0.94620
0.85447 0.78667 0.78403 0.78553 1.19703 1.20613 1.18836 1.21675
0.93566 0.92366 1.50785 0.92307 1.18981 0.94179 0.92388 0.95296
1.21176 0.98028 0.91625 1.01251 1.23358 0.98782 0.94587 1.04853
1.86877 1.18973 1.02046 1.98198 1.23355 1.00394 0.93858 1.05864
1.21261 0.96903 0.89097 1.04676 1.21573 0.87264 0.92734 0.97957
1.86420 1.37766 1.37648 1.73979 1.23354 1.00861 0.95014 1.00470
1.23741 1.03238 1.03851 0.92441 0.92671 0.98477 0.98484 0.92687
0.92627 0.90073 0.90099 0.88822 0.88902 0.90072 0.88935 0.75852
0.86247 0.88393 0.86982 0.88512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16
2 C 0.00 0.05 5.46 84.65 0.46 0.52 16
3 Si 0.96 44.25 29.54 68.60 2.03 46.27 16
4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16
7 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16
8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
9 C 0.03 1.59 4.97 29.85 0.15 1.74 16
10 C -0.08 -3.40 5.16 30.59 0.16 -3.25 16
11 C -0.07 -2.24 5.94 71.98 0.43 -1.81 16
12 S -0.29 -8.12 21.74 -56.49 -1.23 -9.35 16
13 C -0.09 -1.68 5.08 71.98 0.37 -1.31 16
14 C -0.08 -1.37 5.48 30.59 0.17 -1.20 16
15 C 0.05 0.82 3.18 -10.77 -0.03 0.78 16
16 O -0.55 -10.87 13.79 -148.98 -2.06 -12.93 16
17 C -0.16 -2.36 10.20 30.60 0.31 -2.04 16
18 C -0.20 -2.88 10.13 30.62 0.31 -2.57 16
19 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
20 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
21 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16
23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16
24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
27 H 0.09 1.63 6.80 -2.39 -0.02 1.61 16
28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
29 H 0.09 1.47 7.90 -2.39 -0.02 1.46 16
30 H 0.39 5.67 6.58 -74.05 -0.49 5.18 16
31 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.11 1.37 8.05 -2.39 -0.02 1.35 16
34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
Total: -1.00 -64.81 299.33 2.15 -62.66
By element:
Atomic # 1 Polarization: 9.05 SS G_CDS: 0.57 Total: 9.62 kcal
Atomic # 6 Polarization: -42.69 SS G_CDS: 2.55 Total: -40.14 kcal
Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.15 kcal
Atomic # 8 Polarization: -10.87 SS G_CDS: -2.06 Total: -12.93 kcal
Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal
Atomic # 16 Polarization: -8.12 SS G_CDS: -1.23 Total: -9.35 kcal
Total: -64.81 2.15 -62.66 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388300485.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.645 kcal
(2) G-P(sol) polarization free energy of solvation -64.813 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.458 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.307 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds