Wall clock time and date at job start Mon Mar 30 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48506 * 109.46872 * 269.99690 * 3 2 1 5 5 H 1.48500 * 109.47282 * 29.99244 * 3 2 1 6 6 H 1.48499 * 109.47288 * 149.99845 * 3 2 1 7 7 C 1.37875 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99545 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46951 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46723 * 180.02562 * 10 9 7 12 12 S 1.81407 * 109.46849 * 180.02562 * 11 10 9 13 13 C 1.81403 * 103.00104 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47285 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47138 * 180.02562 * 14 13 12 16 16 O 1.42906 * 115.55051 * 325.66650 * 15 14 13 17 17 C 1.53000 * 117.49997 * 179.97438 * 15 14 13 18 18 C 1.53002 * 60.02940 * 252.49592 * 17 15 14 19 19 H 0.97003 * 119.99880 * 0.02562 * 1 2 3 20 20 H 1.08997 * 109.46803 * 60.00079 * 9 7 2 21 21 H 1.08997 * 109.47016 * 300.00348 * 9 7 2 22 22 H 1.08997 * 109.47142 * 60.00484 * 10 9 7 23 23 H 1.08997 * 109.47705 * 300.00123 * 10 9 7 24 24 H 1.08993 * 109.47483 * 60.00335 * 11 10 9 25 25 H 1.09003 * 109.47354 * 300.00069 * 11 10 9 26 26 H 1.09001 * 109.47040 * 59.99580 * 13 12 11 27 27 H 1.09004 * 109.47090 * 300.00019 * 13 12 11 28 28 H 1.08996 * 109.47198 * 59.99390 * 14 13 12 29 29 H 1.08998 * 109.46791 * 299.99596 * 14 13 12 30 30 H 0.96704 * 113.99690 * 34.32990 * 16 15 14 31 31 H 1.09002 * 117.49833 * 359.97438 * 17 15 14 32 32 H 1.09002 * 117.49953 * 144.99738 * 17 15 14 33 33 H 1.09000 * 117.49996 * 107.50493 * 18 17 15 34 34 H 1.08999 * 117.49664 * 252.51862 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 16 2.6593 -6.3658 0.0007 13 6 1.5810 -7.8246 -0.0010 14 6 2.4379 -9.0922 0.0001 15 6 1.5285 -10.3225 -0.0020 16 8 0.3046 -10.1856 0.7231 17 6 2.1999 -11.6973 -0.0018 18 6 1.5081 -11.1847 -1.2666 19 1 -0.4850 0.8401 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8902 22 1 2.8720 -3.6043 0.8905 23 1 2.8721 -3.6043 -0.8894 24 1 0.8541 -5.0446 -0.8903 25 1 0.8534 -5.0451 0.8896 26 1 0.9528 -7.8111 -0.8916 27 1 0.9509 -7.8117 0.8883 28 1 3.0659 -9.1054 0.8909 29 1 3.0682 -9.1053 -0.8890 30 1 -0.0754 -9.2970 0.6889 31 1 3.2896 -11.7252 -0.0007 32 1 1.7084 -12.4975 0.5516 33 1 2.1426 -10.8754 -2.0972 34 1 0.5613 -11.6474 -1.5450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388300485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:26 Heat of formation + Delta-G solvation = -69.307070 kcal Electronic energy + Delta-G solvation = -13254.457908 eV Core-core repulsion = 10891.772958 eV Total energy + Delta-G solvation = -2362.684951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80301 -36.37056 -35.12856 -34.05319 -33.21514 -29.44056 -25.86251 -24.88726 -23.37909 -22.09996 -21.33049 -18.56828 -18.31681 -17.13600 -16.60041 -16.46609 -16.05034 -15.61851 -15.38823 -14.64553 -14.41281 -14.07911 -13.68132 -13.47561 -13.30302 -12.81556 -12.75102 -12.67947 -12.55184 -12.36513 -12.18820 -11.66056 -11.54967 -11.31741 -11.03295 -10.89700 -10.57045 -10.23485 -8.68325 -8.22047 -6.33102 0.63337 1.40444 1.41426 1.52851 1.62704 2.40624 2.71516 3.04569 3.11467 3.54632 3.79209 3.84974 4.03031 4.05671 4.09837 4.33133 4.49746 4.58876 4.70824 4.72573 4.80892 4.87907 4.96312 4.97579 5.00774 5.12575 5.21058 5.48083 5.67257 5.81354 6.21490 6.63893 6.82680 7.36262 8.89701 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.082525 B = 0.003529 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.207729 B = 7931.492406 C = 8124.748067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.082 4.082 11 C -0.068 4.068 12 S -0.289 6.289 13 C -0.087 4.087 14 C -0.081 4.081 15 C 0.048 3.952 16 O -0.549 6.549 17 C -0.160 4.160 18 C -0.195 4.195 19 H 0.265 0.735 20 H -0.003 1.003 21 H -0.003 1.003 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.390 0.610 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -20.481 -1.201 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.121 4.121 11 C -0.216 4.216 12 S -0.061 6.061 13 C -0.235 4.235 14 C -0.119 4.119 15 C 0.005 3.995 16 O -0.358 6.358 17 C -0.197 4.197 18 C -0.233 4.233 19 H 0.073 0.927 20 H 0.015 0.985 21 H 0.015 0.985 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.241 0.759 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.562 -20.954 -1.069 21.471 hybrid contribution -1.438 1.564 -0.068 2.126 sum 3.123 -19.389 -1.137 19.672 Atomic orbital electron populations 1.70085 1.07725 1.27870 1.51543 1.25963 0.95798 1.03319 0.94620 0.85447 0.78667 0.78403 0.78553 1.19703 1.20613 1.18836 1.21675 0.93566 0.92366 1.50785 0.92307 1.18981 0.94179 0.92388 0.95296 1.21176 0.98028 0.91625 1.01251 1.23358 0.98782 0.94587 1.04853 1.86877 1.18973 1.02046 1.98198 1.23355 1.00394 0.93858 1.05864 1.21261 0.96903 0.89097 1.04676 1.21573 0.87264 0.92734 0.97957 1.86420 1.37766 1.37648 1.73979 1.23354 1.00861 0.95014 1.00470 1.23741 1.03238 1.03851 0.92441 0.92671 0.98477 0.98484 0.92687 0.92627 0.90073 0.90099 0.88822 0.88902 0.90072 0.88935 0.75852 0.86247 0.88393 0.86982 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.08 -3.40 5.16 30.59 0.16 -3.25 16 11 C -0.07 -2.24 5.94 71.98 0.43 -1.81 16 12 S -0.29 -8.12 21.74 -56.49 -1.23 -9.35 16 13 C -0.09 -1.68 5.08 71.98 0.37 -1.31 16 14 C -0.08 -1.37 5.48 30.59 0.17 -1.20 16 15 C 0.05 0.82 3.18 -10.77 -0.03 0.78 16 16 O -0.55 -10.87 13.79 -148.98 -2.06 -12.93 16 17 C -0.16 -2.36 10.20 30.60 0.31 -2.04 16 18 C -0.20 -2.88 10.13 30.62 0.31 -2.57 16 19 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 20 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 21 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 22 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.63 6.80 -2.39 -0.02 1.61 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.47 7.90 -2.39 -0.02 1.46 16 30 H 0.39 5.67 6.58 -74.05 -0.49 5.18 16 31 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.37 8.05 -2.39 -0.02 1.35 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.81 299.33 2.15 -62.66 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.57 Total: 9.62 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.55 Total: -40.14 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -2.06 Total: -12.93 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.23 Total: -9.35 kcal Total: -64.81 2.15 -62.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388300485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.645 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds