Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46892 * 111.00164 * 2 1 4 4 C 1.50695 * 109.47437 * 293.95833 * 3 2 1 5 5 H 1.07997 * 119.99956 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00157 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00096 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00058 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47272 * 90.00520 * 8 6 4 10 10 H 1.48500 * 109.47400 * 210.00279 * 8 6 4 11 11 H 1.48501 * 109.47158 * 330.00840 * 8 6 4 12 12 C 1.46900 * 110.99877 * 123.95621 * 2 1 3 13 13 N 1.46510 * 109.47034 * 81.04430 * 12 2 1 14 14 C 1.47085 * 125.55413 * 89.99769 * 13 12 2 15 15 C 1.54082 * 103.79813 * 180.02562 * 14 13 12 16 16 O 1.45707 * 104.13893 * 359.93134 * 15 14 13 17 17 C 1.34001 * 125.55170 * 270.02269 * 13 12 2 18 18 S 1.71199 * 123.08373 * 359.97348 * 17 13 12 19 19 H 1.09003 * 109.46990 * 296.04665 * 1 2 3 20 20 H 1.09002 * 109.47604 * 56.04266 * 1 2 3 21 21 H 1.08998 * 109.47384 * 176.04687 * 1 2 3 22 22 H 1.09000 * 109.46952 * 53.95851 * 3 2 1 23 23 H 1.09003 * 109.46988 * 173.95635 * 3 2 1 24 24 H 0.96998 * 120.00581 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47239 * 321.04586 * 12 2 1 26 26 H 1.09004 * 109.46873 * 201.03923 * 12 2 1 27 27 H 1.09006 * 110.56207 * 61.44283 * 14 13 12 28 28 H 1.09001 * 110.68640 * 298.66285 * 14 13 12 29 29 H 1.09002 * 110.52078 * 118.63441 * 15 14 13 30 30 H 1.09002 * 110.51869 * 241.23037 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6369 2.0471 -1.2983 5 1 1.0745 1.5113 -2.0487 6 6 2.0277 3.3492 -1.5288 7 7 1.7152 3.9387 -2.6620 8 14 3.0009 4.2757 -0.2313 9 1 4.4533 4.0623 -0.4557 10 1 2.6937 5.7257 -0.3235 11 1 2.6297 3.7758 1.1169 12 6 1.9954 -0.7660 1.1376 13 7 1.9696 -2.1955 0.8175 14 6 3.0581 -2.9479 0.1752 15 6 2.5060 -4.3832 0.0794 16 8 1.1781 -4.2941 0.6725 17 6 0.9503 -3.0304 1.0618 18 16 -0.5090 -2.5312 1.8048 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 1.5611 1.9272 0.8310 23 1 3.0797 1.3443 0.1082 24 1 1.9898 4.8548 -2.8240 25 1 1.3795 -0.5796 2.0173 26 1 3.0210 -0.4574 1.3399 27 1 3.9564 -2.9236 0.7923 28 1 3.2666 -2.5508 -0.8182 29 1 2.4390 -4.6981 -0.9620 30 1 3.1323 -5.0721 0.6463 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393718353.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = 10.128941 kcal Electronic energy + Delta-G solvation = -14328.028298 eV Core-core repulsion = 11865.247608 eV Total energy + Delta-G solvation = -2462.780690 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57881 -37.39422 -34.89599 -32.48077 -31.10437 -28.18663 -27.19661 -24.26530 -23.96279 -22.39566 -20.54281 -18.27015 -17.38764 -17.00421 -16.52890 -15.61604 -14.99958 -14.58792 -14.26601 -13.97436 -13.78895 -12.97843 -12.79294 -12.52753 -12.33994 -12.01146 -11.36271 -11.24954 -11.02848 -10.70390 -10.58852 -10.11675 -9.91803 -9.44850 -8.67111 -7.85656 -7.76870 -7.35299 -6.14315 -4.13298 1.06712 1.56763 2.61834 3.12094 3.19746 3.28873 3.29199 3.88193 4.29269 4.32340 4.36695 4.69713 4.90960 5.01467 5.16867 5.23227 5.36803 5.54447 6.13353 6.35444 6.39416 6.60952 6.67302 6.81811 6.95514 7.38617 7.69474 7.80191 8.51771 8.93835 9.45372 10.98564 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.006852 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.005744 B = 4085.535005 C = 4319.587424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.544 5.544 3 C 0.167 3.833 4 C -0.513 4.513 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.282 3.718 13 N -0.541 5.541 14 C 0.050 3.950 15 C 0.023 3.977 16 O -0.279 6.279 17 C 0.493 3.507 18 S -0.548 6.548 19 H 0.025 0.975 20 H 0.075 0.925 21 H 0.066 0.934 22 H -0.003 1.003 23 H 0.024 0.976 24 H 0.265 0.735 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.537 -13.860 6.389 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.269 5.269 3 C 0.041 3.959 4 C -0.551 4.551 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.192 1.192 12 C 0.072 3.928 13 N -0.258 5.258 14 C -0.075 4.075 15 C -0.055 4.055 16 O -0.182 6.182 17 C 0.195 3.805 18 S -0.416 6.416 19 H 0.043 0.957 20 H 0.094 0.906 21 H 0.084 0.916 22 H 0.015 0.985 23 H 0.042 0.958 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.800 -13.659 6.307 16.124 hybrid contribution 1.303 0.721 0.678 1.636 sum 7.103 -12.938 6.985 16.329 Atomic orbital electron populations 1.22582 0.85836 1.01971 1.01093 1.61690 1.09557 1.16849 1.38836 1.20181 0.94611 0.82889 0.98171 1.20950 1.36099 0.97388 1.00655 0.90048 1.24887 0.95760 0.97240 0.95303 1.69880 1.46479 1.13342 1.23804 0.86877 0.80673 0.79630 0.82659 1.20181 1.21004 1.19157 1.22244 1.02119 0.74158 0.94277 1.48792 1.13099 1.10807 1.53100 1.23303 0.92043 0.90134 1.02050 1.24641 0.81780 0.97363 1.01710 1.87615 1.34404 1.25128 1.71046 1.25762 0.91817 0.80949 0.81973 1.93475 1.13258 1.81402 1.53484 0.95676 0.90627 0.91557 0.98518 0.95818 0.92496 0.89691 0.88308 0.87986 0.86996 0.86959 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.51 60.06 0.51 1.20 16 2 N -0.54 -10.80 4.85 -248.31 -1.20 -12.00 16 3 C 0.17 3.79 3.75 -4.98 -0.02 3.77 16 4 C -0.51 -14.03 9.01 -34.44 -0.31 -14.34 16 5 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 8 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 12 C 0.28 4.39 5.73 -63.31 -0.36 4.03 16 13 N -0.54 -7.34 3.18 -178.47 -0.57 -7.91 16 14 C 0.05 0.43 7.69 -3.16 -0.02 0.41 16 15 C 0.02 0.17 8.22 37.72 0.31 0.48 16 16 O -0.28 -3.62 11.12 -14.44 -0.16 -3.78 16 17 C 0.49 7.61 7.49 53.71 0.40 8.01 16 18 S -0.55 -10.50 27.13 -107.50 -2.92 -13.41 16 19 H 0.02 0.51 8.06 -51.93 -0.42 0.09 16 20 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 21 H 0.07 1.34 5.37 -51.93 -0.28 1.06 16 22 H 0.00 -0.07 7.18 -51.93 -0.37 -0.44 16 23 H 0.02 0.51 7.22 -51.93 -0.38 0.14 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.09 1.39 7.08 -51.93 -0.37 1.03 16 26 H 0.10 1.31 7.64 -51.93 -0.40 0.91 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 261.89 15.07 3.95 3.95 Total: -1.00 -33.25 261.89 -8.19 -41.44 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: -3.80 Total: -3.55 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 0.41 Total: 5.42 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -1.00 Total: -45.94 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.16 Total: -3.78 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: -10.50 SS G_CDS: -2.92 Total: -13.41 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.25 -8.19 -41.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393718353.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.572 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds