Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46892 * 111.00164 * 2 1 4 4 C 1.50695 * 109.47437 * 293.95833 * 3 2 1 5 5 H 1.07997 * 119.99956 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00157 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00096 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00058 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.47272 * 90.00520 * 8 6 4 10 10 H 1.48500 * 109.47400 * 210.00279 * 8 6 4 11 11 H 1.48501 * 109.47158 * 330.00840 * 8 6 4 12 12 C 1.46900 * 110.99877 * 123.95621 * 2 1 3 13 13 N 1.46510 * 109.47034 * 81.04430 * 12 2 1 14 14 C 1.47085 * 125.55413 * 89.99769 * 13 12 2 15 15 C 1.54082 * 103.79813 * 180.02562 * 14 13 12 16 16 O 1.45707 * 104.13893 * 359.93134 * 15 14 13 17 17 C 1.34001 * 125.55170 * 270.02269 * 13 12 2 18 18 S 1.71199 * 123.08373 * 359.97348 * 17 13 12 19 19 H 1.09003 * 109.46990 * 296.04665 * 1 2 3 20 20 H 1.09002 * 109.47604 * 56.04266 * 1 2 3 21 21 H 1.08998 * 109.47384 * 176.04687 * 1 2 3 22 22 H 1.09000 * 109.46952 * 53.95851 * 3 2 1 23 23 H 1.09003 * 109.46988 * 173.95635 * 3 2 1 24 24 H 0.96998 * 120.00581 * 179.97438 * 7 6 4 25 25 H 1.08996 * 109.47239 * 321.04586 * 12 2 1 26 26 H 1.09004 * 109.46873 * 201.03923 * 12 2 1 27 27 H 1.09006 * 110.56207 * 61.44283 * 14 13 12 28 28 H 1.09001 * 110.68640 * 298.66285 * 14 13 12 29 29 H 1.09002 * 110.52078 * 118.63441 * 15 14 13 30 30 H 1.09002 * 110.51869 * 241.23037 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6369 2.0471 -1.2983 5 1 1.0745 1.5113 -2.0487 6 6 2.0277 3.3492 -1.5288 7 7 1.7152 3.9387 -2.6620 8 14 3.0009 4.2757 -0.2313 9 1 4.4533 4.0623 -0.4557 10 1 2.6937 5.7257 -0.3235 11 1 2.6297 3.7758 1.1169 12 6 1.9954 -0.7660 1.1376 13 7 1.9696 -2.1955 0.8175 14 6 3.0581 -2.9479 0.1752 15 6 2.5060 -4.3832 0.0794 16 8 1.1781 -4.2941 0.6725 17 6 0.9503 -3.0304 1.0618 18 16 -0.5090 -2.5312 1.8048 19 1 -0.3633 0.4513 0.9233 20 1 -0.3634 0.5740 -0.8524 21 1 -0.3634 -1.0252 -0.0708 22 1 1.5611 1.9272 0.8310 23 1 3.0797 1.3443 0.1082 24 1 1.9898 4.8548 -2.8240 25 1 1.3795 -0.5796 2.0173 26 1 3.0210 -0.4574 1.3399 27 1 3.9564 -2.9236 0.7923 28 1 3.2666 -2.5508 -0.8182 29 1 2.4390 -4.6981 -0.9620 30 1 3.1323 -5.0721 0.6463 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393718353.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -15.944693 kcal Electronic energy + Delta-G solvation = -14329.158936 eV Core-core repulsion = 11865.247608 eV Total energy + Delta-G solvation = -2463.911328 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.61250 -38.83333 -36.22906 -34.49485 -31.96171 -30.02007 -28.67568 -25.84232 -24.84263 -23.67487 -22.25283 -19.55089 -18.87378 -18.25395 -17.64765 -16.92414 -16.51546 -16.15561 -15.73521 -15.35990 -14.72161 -14.50879 -14.14774 -13.76313 -13.65319 -13.34517 -12.97548 -12.70564 -12.58462 -12.41340 -12.31534 -11.92620 -11.54907 -10.90401 -10.77260 -9.39308 -9.25394 -8.85392 -8.27754 -6.32992 -0.14083 0.35032 1.37105 1.40950 1.48307 1.50789 2.20253 2.35673 3.04487 3.13613 3.20035 3.39349 3.84757 4.13503 4.28104 4.40917 4.46593 4.52081 4.63547 4.66170 4.87024 4.96424 5.17402 5.25180 5.46102 5.58640 5.89300 6.08805 6.52793 6.73527 7.30302 8.88980 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.006852 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.005744 B = 4085.535005 C = 4319.587424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.552 5.552 3 C 0.177 3.823 4 C -0.520 4.520 5 H 0.032 0.968 6 C 0.007 3.993 7 N -0.950 5.950 8 Si 0.950 3.050 9 H -0.257 1.257 10 H -0.288 1.288 11 H -0.246 1.246 12 C 0.284 3.716 13 N -0.533 5.533 14 C 0.044 3.956 15 C 0.022 3.978 16 O -0.289 6.289 17 C 0.516 3.484 18 S -0.648 6.648 19 H 0.020 0.980 20 H 0.041 0.959 21 H 0.069 0.931 22 H -0.004 1.004 23 H 0.051 0.949 24 H 0.267 0.733 25 H 0.077 0.923 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.851 -15.009 7.749 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.278 5.278 3 C 0.050 3.950 4 C -0.558 4.558 5 H 0.051 0.949 6 C -0.190 4.190 7 N -0.590 5.590 8 Si 0.773 3.227 9 H -0.182 1.182 10 H -0.214 1.214 11 H -0.169 1.169 12 C 0.074 3.926 13 N -0.248 5.248 14 C -0.079 4.079 15 C -0.055 4.055 16 O -0.190 6.190 17 C 0.214 3.786 18 S -0.518 6.518 19 H 0.039 0.961 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.014 0.986 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.151 0.849 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.151 -14.874 7.660 19.069 hybrid contribution 0.368 0.921 0.100 0.996 sum 9.519 -13.953 7.760 18.588 Atomic orbital electron populations 1.22343 0.86893 1.01398 0.99246 1.61577 1.08655 1.16021 1.41512 1.19963 0.95935 0.83919 0.95172 1.21194 1.35204 0.97734 1.01717 0.94923 1.25889 0.97070 0.98309 0.97744 1.70056 1.48489 1.13926 1.26543 0.85681 0.79543 0.77439 0.80070 1.18195 1.21435 1.16899 1.22291 1.03671 0.74394 0.92221 1.48821 1.13816 1.10207 1.51980 1.23770 0.91696 0.89788 1.02646 1.25194 0.79252 0.97502 1.03544 1.87588 1.37547 1.23311 1.70582 1.25177 0.90558 0.82012 0.80902 1.93661 1.17252 1.82767 1.58077 0.96127 0.93966 0.91251 0.98594 0.93148 0.92410 0.90530 0.84560 0.83862 0.86739 0.84857 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.11 8.51 127.69 1.09 3.20 16 2 N -0.55 -21.29 4.85 -939.52 -4.56 -25.84 16 3 C 0.18 7.70 3.75 85.56 0.32 8.02 16 4 C -0.52 -28.90 9.01 25.60 0.23 -28.67 16 5 H 0.03 2.08 7.37 -2.91 -0.02 2.05 16 6 C 0.01 0.41 5.47 84.66 0.46 0.87 16 7 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 8 Si 0.95 41.33 27.47 68.60 1.88 43.22 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.25 -9.77 6.54 99.48 0.65 -9.12 16 12 C 0.28 8.05 5.73 170.80 0.98 9.03 16 13 N -0.53 -12.82 3.18 -831.34 -2.64 -15.46 16 14 C 0.04 0.54 7.69 86.63 0.67 1.20 16 15 C 0.02 0.21 8.22 72.35 0.59 0.81 16 16 O -0.29 -6.72 11.12 -74.57 -0.83 -7.55 16 17 C 0.52 15.10 7.49 129.91 0.97 16.07 16 18 S -0.65 -25.41 27.13 -56.49 -1.53 -26.94 16 19 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 20 H 0.04 2.02 6.76 -2.39 -0.02 2.00 16 21 H 0.07 2.90 5.37 -2.39 -0.01 2.89 16 22 H 0.00 -0.16 7.18 -2.39 -0.02 -0.18 16 23 H 0.05 1.96 7.22 -2.39 -0.02 1.94 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.08 2.38 7.08 -2.39 -0.02 2.36 16 26 H 0.14 2.90 7.64 -2.38 -0.02 2.88 16 27 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -77.26 261.89 -0.98 -78.24 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.08 Total: 1.77 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.31 Total: 10.52 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -6.90 Total: -99.26 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.83 Total: -7.55 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.88 Total: 43.22 kcal Atomic # 16 Polarization: -25.41 SS G_CDS: -1.53 Total: -26.94 kcal Total: -77.26 -0.98 -78.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393718353.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.297 kcal (2) G-P(sol) polarization free energy of solvation -77.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds