Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38773 * 120.31584 * 2 1 4 4 C 1.38425 * 118.50433 * 180.28403 * 3 2 1 5 5 C 1.39336 * 119.06755 * 359.73556 * 4 3 2 6 6 C 1.48355 * 119.72820 * 180.02562 * 5 4 3 7 7 N 1.32033 * 125.67236 * 0.04243 * 6 5 4 8 8 N 1.28851 * 109.19238 * 180.02562 * 7 6 5 9 9 H 0.96997 * 125.98809 * 180.02562 * 8 7 6 10 10 C 1.36981 * 108.02108 * 359.97438 * 8 7 6 11 11 C 1.40369 * 126.55027 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00270 * 359.97438 * 11 10 8 13 13 C 1.40234 * 119.99920 * 180.02562 * 11 10 8 14 14 N 1.30656 * 119.99943 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00134 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46825 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47029 * 119.99712 * 15 13 11 18 18 H 1.48498 * 109.47065 * 240.00348 * 15 13 11 19 19 N 1.33279 * 106.89637 * 359.74092 * 10 8 7 20 20 N 1.32665 * 120.54821 * 0.02562 * 5 4 3 21 21 C 1.31736 * 121.61767 * 359.97438 * 20 5 4 22 22 H 1.08990 * 109.47158 * 270.22916 * 1 2 3 23 23 H 1.09006 * 109.47311 * 30.22846 * 1 2 3 24 24 H 1.08997 * 109.47180 * 150.22318 * 1 2 3 25 25 H 1.08001 * 120.74839 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.46632 * 179.70882 * 4 3 2 27 27 H 0.96998 * 120.00043 * 180.02562 * 14 13 11 28 28 H 1.08002 * 119.55054 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1980 0.0000 4 6 3.5910 1.1542 -0.0060 5 6 4.2292 -0.0844 -0.0062 6 6 5.7113 -0.1484 -0.0121 7 7 6.5268 0.8900 -0.0166 8 7 7.7455 0.4715 -0.0215 9 1 8.5394 1.0287 -0.0251 10 6 7.7232 -0.8981 -0.0196 11 6 8.8371 -1.7523 -0.0230 12 1 9.8347 -1.3387 -0.0280 13 6 8.6545 -3.1427 -0.0209 14 7 7.4476 -3.6430 -0.0164 15 14 10.1369 -4.2794 -0.0262 16 1 11.3817 -3.4696 -0.0315 17 1 10.1088 -5.1350 1.1873 18 1 10.0986 -5.1372 -1.2378 19 7 6.4419 -1.2647 -0.0076 20 7 3.5223 -1.2071 -0.0013 21 6 2.2050 -1.1938 0.0045 22 1 -0.3633 0.0041 1.0276 23 1 -0.3634 0.8880 -0.5174 24 1 -0.3633 -0.8919 -0.5103 25 1 1.6850 2.1432 0.0004 26 1 4.1678 2.0673 -0.0109 27 1 7.3213 -4.6048 -0.0146 28 1 1.6630 -2.1279 0.0081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400599431.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = 105.005140 kcal Electronic energy + Delta-G solvation = -14814.499140 eV Core-core repulsion = 12252.681390 eV Total energy + Delta-G solvation = -2561.817750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98275 -39.49325 -33.70592 -33.41910 -31.76631 -30.95394 -29.68235 -27.00716 -25.66236 -23.08871 -22.34223 -20.60989 -19.81033 -17.51260 -16.35307 -16.03754 -15.25346 -14.76179 -14.55686 -14.35043 -13.74405 -13.31366 -12.85325 -12.50469 -12.43494 -12.34134 -11.67959 -11.30137 -11.26777 -10.79290 -10.32198 -9.90666 -9.53467 -9.36876 -9.15126 -8.76676 -8.17014 -8.03209 -7.52882 -6.51402 -4.58422 1.40902 1.78181 2.99847 3.12518 3.16643 3.51495 3.95749 4.16602 4.36592 4.84794 4.94169 5.06847 5.14474 5.26578 5.34478 5.46522 5.65276 5.79524 5.85314 6.10278 6.21670 6.39449 6.58133 6.78222 7.09865 7.18729 7.48524 8.03863 8.19207 8.48627 8.65790 8.80898 9.09774 10.23973 10.41711 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.044095 B = 0.006407 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.846592 B = 4368.883685 C = 4988.580043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.161 4.161 3 C -0.083 4.083 4 C -0.150 4.150 5 C 0.242 3.758 6 C 0.198 3.802 7 N -0.383 5.383 8 N -0.483 5.483 9 H 0.423 0.577 10 C 0.355 3.645 11 C -0.457 4.457 12 H 0.086 0.914 13 C 0.080 3.920 14 N -0.726 5.726 15 Si 0.916 3.084 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.492 5.492 20 N -0.443 5.443 21 C 0.100 3.900 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.129 0.871 26 H 0.138 0.862 27 H 0.277 0.723 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 4.663 0.018 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.164 4.164 3 C -0.108 4.108 4 C -0.173 4.173 5 C 0.104 3.896 6 C -0.080 4.080 7 N -0.225 5.225 8 N -0.202 5.202 9 H 0.265 0.735 10 C 0.103 3.897 11 C -0.499 4.499 12 H 0.104 0.896 13 C -0.146 4.146 14 N -0.349 5.349 15 Si 0.740 3.260 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.224 5.224 20 N -0.152 5.152 21 C -0.060 4.060 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.147 0.853 26 H 0.156 0.844 27 H 0.088 0.912 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.716 3.959 0.024 8.673 hybrid contribution 0.977 0.515 -0.003 1.105 sum -6.739 4.474 0.022 8.089 Atomic orbital electron populations 1.20633 0.90793 1.02530 1.02013 1.20913 0.97095 0.94535 1.03893 1.21286 0.93665 0.97763 0.98120 1.22051 0.94608 0.99109 1.01498 1.18353 0.89550 0.88014 0.93707 1.21488 0.92061 0.88011 1.06479 1.73739 0.91131 1.26243 1.31358 1.44988 1.05010 1.07566 1.62673 0.73485 1.21696 0.93679 0.80312 0.93986 1.18267 0.90892 0.90054 1.50674 0.89609 1.25784 0.96876 0.98546 0.93420 1.70008 1.21581 1.13534 1.29821 0.86154 0.81391 0.79964 0.78501 1.18629 1.19890 1.19886 1.72411 0.98927 1.22989 1.28111 1.67727 1.07012 1.30583 1.09829 1.22666 0.89753 0.97110 0.96432 0.91449 0.91855 0.91525 0.85301 0.84395 0.91239 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.03 36.01 0.36 -0.67 15 2 C -0.16 -2.35 5.90 -104.40 -0.62 -2.97 15 3 C -0.08 -1.24 9.85 -39.31 -0.39 -1.63 15 4 C -0.15 -2.82 9.72 -39.10 -0.38 -3.20 15 5 C 0.24 5.64 6.75 -82.93 -0.56 5.08 15 6 C 0.20 5.32 7.84 -156.69 -1.23 4.09 15 7 N -0.38 -9.63 11.89 32.08 0.38 -9.25 15 8 N -0.48 -11.73 7.07 31.13 0.22 -11.51 15 9 H 0.42 8.43 8.96 -190.21 -1.70 6.72 15 10 C 0.35 9.89 7.70 -155.73 -1.20 8.69 15 11 C -0.46 -12.10 9.47 -38.03 -0.36 -12.46 15 12 H 0.09 2.04 7.85 -52.49 -0.41 1.63 15 13 C 0.08 2.07 5.50 -17.30 -0.10 1.98 15 14 N -0.73 -20.22 11.94 55.56 0.66 -19.55 15 15 Si 0.92 18.72 29.56 -169.99 -5.03 13.69 15 16 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 19 N -0.49 -14.64 9.62 -10.43 -0.10 -14.74 15 20 N -0.44 -10.14 10.27 -9.77 -0.10 -10.24 15 21 C 0.10 1.75 10.85 -17.57 -0.19 1.56 15 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.06 0.55 8.10 -51.93 -0.42 0.13 15 24 H 0.07 0.60 8.09 -51.93 -0.42 0.18 15 25 H 0.13 1.47 8.06 -52.49 -0.42 1.04 15 26 H 0.14 2.45 7.83 -52.49 -0.41 2.04 15 27 H 0.28 6.98 8.29 -40.82 -0.34 6.64 15 28 H 0.15 2.17 8.06 -52.49 -0.42 1.75 15 LS Contribution 258.67 15.07 3.90 3.90 Total: -1.00 -33.46 258.67 -8.49 -41.95 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.77 Total: 5.28 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -4.66 Total: 0.47 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 1.06 Total: -65.30 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.46 -8.49 -41.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400599431.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.955 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds