Wall clock time and date at job start Mon Mar 30 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38773 * 120.31584 * 2 1 4 4 C 1.38425 * 118.50433 * 180.28403 * 3 2 1 5 5 C 1.39336 * 119.06755 * 359.73556 * 4 3 2 6 6 C 1.48355 * 119.72820 * 180.02562 * 5 4 3 7 7 N 1.32033 * 125.67236 * 0.04243 * 6 5 4 8 8 N 1.28851 * 109.19238 * 180.02562 * 7 6 5 9 9 H 0.96997 * 125.98809 * 180.02562 * 8 7 6 10 10 C 1.36981 * 108.02108 * 359.97438 * 8 7 6 11 11 C 1.40369 * 126.55027 * 180.02562 * 10 8 7 12 12 H 1.07995 * 120.00270 * 359.97438 * 11 10 8 13 13 C 1.40234 * 119.99920 * 180.02562 * 11 10 8 14 14 N 1.30656 * 119.99943 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00134 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46825 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47029 * 119.99712 * 15 13 11 18 18 H 1.48498 * 109.47065 * 240.00348 * 15 13 11 19 19 N 1.33279 * 106.89637 * 359.74092 * 10 8 7 20 20 N 1.32665 * 120.54821 * 0.02562 * 5 4 3 21 21 C 1.31736 * 121.61767 * 359.97438 * 20 5 4 22 22 H 1.08990 * 109.47158 * 270.22916 * 1 2 3 23 23 H 1.09006 * 109.47311 * 30.22846 * 1 2 3 24 24 H 1.08997 * 109.47180 * 150.22318 * 1 2 3 25 25 H 1.08001 * 120.74839 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.46632 * 179.70882 * 4 3 2 27 27 H 0.96998 * 120.00043 * 180.02562 * 14 13 11 28 28 H 1.08002 * 119.55054 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1980 0.0000 4 6 3.5910 1.1542 -0.0060 5 6 4.2292 -0.0844 -0.0062 6 6 5.7113 -0.1484 -0.0121 7 7 6.5268 0.8900 -0.0166 8 7 7.7455 0.4715 -0.0215 9 1 8.5394 1.0287 -0.0251 10 6 7.7232 -0.8981 -0.0196 11 6 8.8371 -1.7523 -0.0230 12 1 9.8347 -1.3387 -0.0280 13 6 8.6545 -3.1427 -0.0209 14 7 7.4476 -3.6430 -0.0164 15 14 10.1369 -4.2794 -0.0262 16 1 11.3817 -3.4696 -0.0315 17 1 10.1088 -5.1350 1.1873 18 1 10.0986 -5.1372 -1.2378 19 7 6.4419 -1.2647 -0.0076 20 7 3.5223 -1.2071 -0.0013 21 6 2.2050 -1.1938 0.0045 22 1 -0.3633 0.0041 1.0276 23 1 -0.3634 0.8880 -0.5174 24 1 -0.3633 -0.8919 -0.5103 25 1 1.6850 2.1432 0.0004 26 1 4.1678 2.0673 -0.0109 27 1 7.3213 -4.6048 -0.0146 28 1 1.6630 -2.1279 0.0081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400599431.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:13 Heat of formation + Delta-G solvation = 81.692430 kcal Electronic energy + Delta-G solvation = -14815.510055 eV Core-core repulsion = 12252.681390 eV Total energy + Delta-G solvation = -2562.828665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.93736 -40.90660 -35.62664 -34.81549 -33.33553 -32.76216 -31.51950 -28.38984 -27.50536 -24.53502 -23.77463 -22.57617 -21.47748 -19.47439 -18.23685 -17.52774 -16.81741 -16.42415 -16.23342 -15.92958 -15.04283 -15.01840 -14.32115 -13.88665 -13.54596 -13.53673 -13.17045 -12.93914 -12.75525 -12.39117 -12.10651 -11.77722 -11.40834 -10.92387 -10.69880 -10.23524 -10.10596 -10.07298 -9.21986 -8.45079 -6.63127 -0.03104 0.45113 1.30535 1.44783 1.62471 1.72111 2.23148 2.43100 2.62776 3.11319 3.35846 3.46761 3.76872 3.98506 4.09474 4.13089 4.45959 4.66091 4.79654 4.93934 4.99025 5.15775 5.21749 5.27311 5.40253 5.53027 5.86412 6.10581 6.26173 6.48619 6.80530 7.12997 7.25746 8.25618 8.50794 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.044095 B = 0.006407 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.846592 B = 4368.883685 C = 4988.580043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.135 4.135 3 C -0.073 4.073 4 C -0.148 4.148 5 C 0.188 3.812 6 C 0.181 3.819 7 N -0.381 5.381 8 N -0.475 5.475 9 H 0.440 0.560 10 C 0.327 3.673 11 C -0.479 4.479 12 H 0.107 0.893 13 C 0.029 3.971 14 N -0.777 5.777 15 Si 1.005 2.995 16 H -0.246 1.246 17 H -0.269 1.269 18 H -0.269 1.269 19 N -0.541 5.541 20 N -0.494 5.494 21 C 0.082 3.918 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.178 0.822 26 H 0.141 0.859 27 H 0.281 0.719 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 5.282 0.015 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C -0.099 4.099 4 C -0.170 4.170 5 C 0.051 3.949 6 C -0.098 4.098 7 N -0.222 5.222 8 N -0.198 5.198 9 H 0.285 0.715 10 C 0.075 3.925 11 C -0.520 4.520 12 H 0.125 0.875 13 C -0.192 4.192 14 N -0.401 5.401 15 Si 0.824 3.176 16 H -0.169 1.169 17 H -0.194 1.194 18 H -0.194 1.194 19 N -0.274 5.274 20 N -0.204 5.204 21 C -0.077 4.077 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.099 0.901 25 H 0.195 0.805 26 H 0.159 0.841 27 H 0.092 0.908 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.961 4.634 0.021 10.088 hybrid contribution 1.159 0.391 0.000 1.223 sum -7.803 5.025 0.022 9.281 Atomic orbital electron populations 1.20771 0.86681 1.04507 1.03745 1.21448 0.99726 0.93084 0.99498 1.21808 0.92001 1.00036 0.96015 1.22133 0.96489 0.97357 1.01064 1.18383 0.88164 0.89993 0.98340 1.22321 0.94252 0.87414 1.05810 1.73656 0.91256 1.25878 1.31386 1.44916 1.05524 1.06955 1.62359 0.71495 1.22117 0.93966 0.81702 0.94724 1.18845 0.91490 0.90880 1.50827 0.87474 1.26978 1.00297 1.00022 0.91951 1.70167 1.24668 1.14235 1.31068 0.84834 0.77099 0.77145 0.78503 1.16857 1.19412 1.19401 1.72329 1.00216 1.25051 1.29777 1.67536 1.09695 1.31637 1.11500 1.23206 0.88344 0.99667 0.96516 0.89547 0.89421 0.90132 0.80507 0.84108 0.90827 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.03 71.24 0.71 -0.79 15 2 C -0.13 -3.51 5.90 -19.72 -0.12 -3.63 15 3 C -0.07 -1.97 9.85 22.44 0.22 -1.75 15 4 C -0.15 -5.49 9.72 22.58 0.22 -5.27 15 5 C 0.19 9.09 6.75 41.98 0.28 9.38 15 6 C 0.18 10.19 7.84 137.47 1.08 11.27 15 7 N -0.38 -19.83 11.89 -52.43 -0.62 -20.45 15 8 N -0.48 -23.87 7.07 -55.41 -0.39 -24.26 15 9 H 0.44 17.90 8.96 -219.80 -1.97 15.93 15 10 C 0.33 18.96 7.70 133.78 1.03 19.99 15 11 C -0.48 -25.92 9.47 23.27 0.22 -25.70 15 12 H 0.11 5.10 7.85 -2.91 -0.02 5.07 15 13 C 0.03 1.54 5.50 85.35 0.47 2.01 15 14 N -0.78 -44.97 11.94 21.87 0.26 -44.70 15 15 Si 1.01 38.53 29.56 68.60 2.03 40.56 15 16 H -0.25 -8.66 7.11 99.48 0.71 -7.95 15 17 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 18 H -0.27 -10.03 7.11 99.48 0.71 -9.33 15 19 N -0.54 -33.88 9.62 -186.90 -1.80 -35.68 15 20 N -0.49 -23.41 10.27 -184.82 -1.90 -25.31 15 21 C 0.08 2.81 10.85 84.72 0.92 3.73 15 22 H 0.09 1.10 8.14 -2.39 -0.02 1.08 15 23 H 0.09 0.99 8.10 -2.38 -0.02 0.97 15 24 H 0.08 1.06 8.09 -2.39 -0.02 1.04 15 25 H 0.18 3.05 8.06 -2.91 -0.02 3.03 15 26 H 0.14 4.97 7.83 -2.91 -0.02 4.95 15 27 H 0.28 14.76 8.29 -92.71 -0.77 13.99 15 28 H 0.17 4.81 8.06 -2.91 -0.02 4.79 15 Total: -1.00 -78.20 258.67 1.85 -76.36 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.77 Total: 24.24 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.04 Total: 9.25 kcal Atomic # 7 Polarization: -145.95 SS G_CDS: -4.45 Total: -150.40 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -78.20 1.85 -76.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400599431.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.049 kcal (2) G-P(sol) polarization free energy of solvation -78.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds