Wall clock time and date at job start Mon Mar 30 2020 03:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34912 * 126.07147 * 2 1 4 4 C 1.41199 * 107.92549 * 180.02562 * 3 2 1 5 5 C 1.48161 * 125.95125 * 179.97438 * 4 3 2 6 6 C 1.39613 * 120.11859 * 179.72367 * 5 4 3 7 7 N 1.31947 * 119.85306 * 179.76127 * 6 5 4 8 8 C 1.32249 * 120.10528 * 0.51941 * 7 6 5 9 9 C 1.38421 * 120.24038 * 359.73644 * 8 7 6 10 10 N 1.32018 * 120.14201 * 359.97438 * 9 8 7 11 11 N 1.31844 * 108.09931 * 359.72239 * 4 3 2 12 12 N 1.36439 * 126.07622 * 180.02562 * 2 1 3 13 13 C 1.37182 * 126.00547 * 359.96374 * 12 2 1 14 14 H 1.08000 * 119.99932 * 8.38349 * 13 12 2 15 15 C 1.39045 * 119.99721 * 188.38735 * 13 12 2 16 16 N 1.31245 * 119.99774 * 193.63896 * 15 13 12 17 17 Si 1.86804 * 120.00075 * 13.91352 * 15 13 12 18 18 H 1.48508 * 109.46895 * 269.72515 * 17 15 13 19 19 H 1.48497 * 109.47131 * 29.72334 * 17 15 13 20 20 H 1.48500 * 109.47085 * 149.72622 * 17 15 13 21 21 H 1.09007 * 109.47165 * 269.95485 * 1 2 3 22 22 H 1.08997 * 109.47412 * 29.95335 * 1 2 3 23 23 H 1.09001 * 109.47329 * 149.95888 * 1 2 3 24 24 H 1.07997 * 126.04063 * 0.06971 * 3 2 1 25 25 H 1.08000 * 120.07396 * 0.02562 * 6 5 4 26 26 H 1.08000 * 119.87757 * 179.70542 * 8 7 6 27 27 H 1.07999 * 119.92803 * 179.97438 * 9 8 7 28 28 H 0.96999 * 120.00313 * 355.00150 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3013 1.0905 0.0000 4 6 3.6431 0.6507 -0.0006 5 6 4.8432 1.5196 -0.0013 6 6 6.1188 0.9522 0.0039 7 7 7.1840 1.7309 -0.0015 8 6 7.0444 3.0460 -0.0016 9 6 5.7816 3.6129 -0.0015 10 7 4.7092 2.8429 -0.0018 11 7 3.6420 -0.6677 0.0051 12 7 2.3104 -1.1027 -0.0005 13 6 1.8883 -2.4080 -0.0004 14 1 0.8417 -2.6371 -0.1362 15 6 2.8081 -3.4360 0.1747 16 7 2.4650 -4.6753 -0.0880 17 14 4.5296 -3.0541 0.7912 18 1 5.4234 -2.7941 -0.3659 19 1 4.4878 -1.8534 1.6640 20 1 5.0461 -4.2112 1.5655 21 1 -0.3634 -0.0008 1.0277 22 1 -0.3634 0.8904 -0.5131 23 1 -0.3634 -0.8896 -0.5145 24 1 1.9696 2.1182 0.0011 25 1 6.2335 -0.1217 0.0082 26 1 7.9188 3.6798 -0.0013 27 1 5.6734 4.6875 -0.0011 28 1 1.5502 -4.8835 -0.3344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409438656.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:39 Heat of formation + Delta-G solvation = 90.299226 kcal Electronic energy + Delta-G solvation = -15154.565862 eV Core-core repulsion = 12592.110416 eV Total energy + Delta-G solvation = -2562.455446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.18208 -41.47434 -36.01629 -35.23697 -34.01461 -32.56900 -31.69924 -27.82395 -27.06205 -25.42564 -25.06259 -22.05304 -20.84264 -19.86034 -18.34041 -17.94370 -17.38069 -16.74103 -16.34039 -15.72369 -15.42323 -15.27157 -14.86527 -14.12129 -13.71219 -13.66866 -13.56989 -13.02989 -12.84790 -12.58835 -12.48742 -12.29590 -12.05933 -11.58505 -10.81489 -10.69098 -10.03841 -9.72925 -9.44588 -9.36553 -6.56161 -0.40643 0.12134 1.08038 1.41843 1.58628 1.80958 1.97017 2.06879 2.26601 2.81472 2.94443 3.11304 3.32317 3.53510 3.84333 4.09007 4.30859 4.40368 4.48254 4.59663 4.71334 4.79991 5.01316 5.03936 5.27403 5.39975 5.50176 5.73294 5.93954 6.25818 6.37914 6.80429 6.99755 7.18990 8.02525 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.009747 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.266572 B = 2871.910386 C = 3804.855126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.019 4.019 3 C -0.239 4.239 4 C 0.025 3.975 5 C 0.160 3.840 6 C 0.041 3.959 7 N -0.453 5.453 8 C 0.042 3.958 9 C 0.069 3.931 10 N -0.451 5.451 11 N -0.366 5.366 12 N -0.172 5.172 13 C -0.392 4.392 14 H 0.117 0.883 15 C 0.014 3.986 16 N -0.850 5.850 17 Si 1.134 2.866 18 H -0.280 1.280 19 H -0.277 1.277 20 H -0.301 1.301 21 H 0.077 0.923 22 H 0.099 0.901 23 H 0.057 0.943 24 H 0.157 0.843 25 H 0.151 0.849 26 H 0.218 0.782 27 H 0.221 0.779 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 14.440 0.691 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.147 4.147 3 C -0.270 4.270 4 C -0.125 4.125 5 C 0.023 3.977 6 C -0.118 4.118 7 N -0.167 5.167 8 C -0.119 4.119 9 C -0.094 4.094 10 N -0.167 5.167 11 N -0.203 5.203 12 N 0.059 4.941 13 C -0.524 4.524 14 H 0.135 0.865 15 C -0.198 4.198 16 N -0.479 5.479 17 Si 0.962 3.038 18 H -0.207 1.207 19 H -0.204 1.204 20 H -0.231 1.231 21 H 0.096 0.904 22 H 0.117 0.883 23 H 0.076 0.924 24 H 0.175 0.825 25 H 0.168 0.832 26 H 0.234 0.766 27 H 0.237 0.763 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.357 12.572 0.981 13.701 hybrid contribution -2.322 0.648 -0.493 2.460 sum 3.036 13.219 0.487 13.572 Atomic orbital electron populations 1.20214 0.85594 1.03355 1.03021 1.21627 0.96209 0.86155 1.10731 1.20912 0.90109 0.98823 1.17133 1.19889 0.93188 0.89999 1.09461 1.19430 0.91090 0.90340 0.96840 1.23503 0.88597 1.01281 0.98430 1.68432 1.32198 1.07132 1.08949 1.24606 1.00574 0.91234 0.95533 1.24600 0.88028 1.03027 0.93742 1.68324 1.35059 1.03474 1.09870 1.76474 0.98501 1.11864 1.33413 1.45032 1.02494 1.05594 1.40970 1.21138 0.97706 0.79244 1.54280 0.86547 1.27419 1.08527 0.91470 0.92383 1.70854 1.21691 1.19539 1.35780 0.82468 0.70715 0.73007 0.77618 1.20679 1.20402 1.23098 0.90403 0.88273 0.92420 0.82530 0.83202 0.76585 0.76304 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.14 10.07 71.23 0.72 -1.42 15 2 C -0.02 -0.84 6.91 41.08 0.28 -0.55 15 3 C -0.24 -10.29 10.46 22.23 0.23 -10.06 15 4 C 0.02 1.15 7.02 42.51 0.30 1.45 15 5 C 0.16 6.44 6.76 41.93 0.28 6.72 15 6 C 0.04 1.58 10.88 85.01 0.92 2.51 15 7 N -0.45 -14.43 10.49 -194.24 -2.04 -16.46 15 8 C 0.04 0.93 11.22 84.67 0.95 1.88 15 9 C 0.07 1.54 11.22 84.71 0.95 2.49 15 10 N -0.45 -14.99 10.24 -184.28 -1.89 -16.88 15 11 N -0.37 -19.03 7.01 -48.02 -0.34 -19.37 15 12 N -0.17 -8.94 3.60 -178.94 -0.64 -9.58 15 13 C -0.39 -21.13 10.26 84.05 0.86 -20.27 15 14 H 0.12 6.10 7.22 -2.91 -0.02 6.08 15 15 C 0.01 0.78 5.50 84.97 0.47 1.24 15 16 N -0.85 -47.06 13.68 21.67 0.30 -46.76 15 17 Si 1.13 56.64 26.25 68.60 1.80 58.44 15 18 H -0.28 -13.90 7.11 99.48 0.71 -13.19 15 19 H -0.28 -14.12 6.37 99.48 0.63 -13.49 15 20 H -0.30 -14.42 7.11 99.48 0.71 -13.72 15 21 H 0.08 2.37 8.14 -2.38 -0.02 2.35 15 22 H 0.10 2.66 8.14 -2.39 -0.02 2.64 15 23 H 0.06 1.97 7.29 -2.39 -0.02 1.96 15 24 H 0.16 5.83 8.06 -2.91 -0.02 5.81 15 25 H 0.15 6.19 7.85 -2.91 -0.02 6.17 15 26 H 0.22 2.41 8.06 -2.91 -0.02 2.39 15 27 H 0.22 2.46 8.06 -2.91 -0.02 2.44 15 28 H 0.28 14.92 8.73 -92.71 -0.81 14.11 15 Total: -1.00 -67.30 253.68 4.23 -63.08 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.07 Total: 3.55 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 5.97 Total: -16.01 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.61 Total: -109.05 kcal Atomic # 14 Polarization: 56.64 SS G_CDS: 1.80 Total: 58.44 kcal Total: -67.30 4.23 -63.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438656.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.375 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds