Wall clock time and date at job start Mon Mar 30 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48502 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47140 * 300.00244 * 3 2 1 6 6 H 1.48497 * 109.47040 * 60.00143 * 3 2 1 7 7 C 1.38958 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00370 * 179.97438 * 7 2 1 9 9 N 1.37136 * 119.99926 * 359.97438 * 7 2 1 10 10 N 1.40075 * 126.04252 * 359.69528 * 9 7 2 11 11 C 1.31961 * 108.31644 * 180.26224 * 10 9 7 12 12 C 1.48186 * 125.85618 * 180.02562 * 11 10 9 13 13 C 1.39447 * 119.73964 * 359.97241 * 12 11 10 14 14 C 1.38370 * 119.06389 * 179.97438 * 13 12 11 15 15 C 1.38811 * 118.51555 * 359.97438 * 14 13 12 16 16 C 1.38280 * 119.38418 * 359.97438 * 15 14 13 17 17 N 1.31741 * 120.90091 * 359.74038 * 16 15 14 18 18 C 1.40880 * 108.27885 * 359.97438 * 11 10 9 19 19 C 1.35870 * 107.86033 * 0.02562 * 18 11 10 20 20 N 1.38912 * 126.18683 * 180.02562 * 19 18 11 21 21 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.46459 * 359.97438 * 13 12 11 23 23 H 1.07999 * 120.74303 * 180.02562 * 14 13 12 24 24 H 1.08002 * 120.30624 * 180.02562 * 15 14 13 25 25 H 1.08001 * 119.54599 * 180.02562 * 16 15 14 26 26 H 1.08002 * 126.06968 * 179.97438 * 18 11 10 27 27 H 0.97003 * 119.99745 * 179.97438 * 20 19 18 28 28 H 0.96996 * 120.00373 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7072 1.3463 0.0006 5 1 1.8885 2.3964 -1.2125 6 1 1.8885 2.3964 1.2125 7 6 2.0080 -1.2034 0.0005 8 1 3.0880 -1.2035 0.0001 9 7 1.3223 -2.3910 0.0016 10 7 -0.0707 -2.5385 0.0083 11 6 -0.3512 -3.8279 0.0128 12 6 -1.7093 -4.4207 0.0199 13 6 -2.8277 -3.5878 0.0229 14 6 -4.0892 -4.1562 0.0290 15 6 -4.1922 -5.5405 0.0314 16 6 -3.0410 -6.3066 0.0272 17 7 -1.8516 -5.7404 0.0157 18 6 0.8620 -4.5441 0.0086 19 6 1.8782 -3.6422 0.0019 20 7 3.2358 -3.9364 -0.0044 21 1 -0.4850 0.8401 0.0004 22 1 -2.7108 -2.5141 0.0204 23 1 -4.9739 -3.5368 0.0309 24 1 -5.1625 -6.0148 0.0357 25 1 -3.1182 -7.3839 0.0286 26 1 0.9658 -5.6191 0.0111 27 1 3.8877 -3.2181 -0.0093 28 1 3.5320 -4.8601 -0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409438902.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:35 Heat of formation + Delta-G solvation = 117.342215 kcal Electronic energy + Delta-G solvation = -15011.934049 eV Core-core repulsion = 12450.651275 eV Total energy + Delta-G solvation = -2561.282774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73740 -38.94398 -33.64101 -33.34503 -31.90342 -31.16634 -29.45523 -26.82010 -25.18723 -22.97434 -22.74719 -19.73956 -19.34699 -17.53597 -16.58822 -15.58666 -15.38468 -15.10579 -14.61547 -14.29456 -13.78018 -13.29856 -13.02943 -12.78642 -12.48863 -12.08302 -11.39319 -11.27649 -11.12890 -10.80010 -10.45206 -9.91885 -9.68151 -9.26807 -9.00858 -8.60740 -8.56728 -7.55498 -6.52632 -6.36197 -4.18259 1.56514 1.88187 2.98260 3.05899 3.10999 3.70587 3.79165 4.01385 4.30947 4.80256 4.91003 5.06367 5.22086 5.29337 5.53288 5.66149 5.80192 6.18564 6.34472 6.59265 6.69560 6.80643 7.03935 7.14796 7.23866 7.36993 7.71280 8.06548 8.29252 8.57563 8.68304 8.77312 9.47371 9.67579 10.45099 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.007815 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.176008 B = 3581.939777 C = 4440.268608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.048 3.952 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.325 4.325 8 H 0.112 0.888 9 N -0.172 5.172 10 N -0.230 5.230 11 C 0.009 3.991 12 C 0.247 3.753 13 C -0.157 4.157 14 C -0.079 4.079 15 C -0.206 4.206 16 C 0.097 3.903 17 N -0.485 5.485 18 C -0.300 4.300 19 C 0.247 3.753 20 N -0.869 5.869 21 H 0.272 0.728 22 H 0.143 0.857 23 H 0.126 0.874 24 H 0.123 0.877 25 H 0.147 0.853 26 H 0.124 0.876 27 H 0.390 0.610 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -4.821 0.041 5.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.168 4.168 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.457 4.457 8 H 0.130 0.870 9 N 0.053 4.947 10 N -0.063 5.063 11 C -0.145 4.145 12 C 0.110 3.890 13 C -0.179 4.179 14 C -0.105 4.105 15 C -0.227 4.227 16 C -0.061 4.061 17 N -0.195 5.195 18 C -0.335 4.335 19 C 0.024 3.976 20 N -0.420 5.420 21 H 0.083 0.917 22 H 0.161 0.839 23 H 0.144 0.856 24 H 0.141 0.859 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.217 0.783 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.257 -3.958 0.027 4.556 hybrid contribution 0.334 0.403 0.005 0.523 sum -1.923 -3.555 0.031 4.042 Atomic orbital electron populations 1.70201 1.05970 1.27538 1.36874 1.25502 0.95687 0.99891 0.95719 0.85817 0.79572 0.80644 0.78397 1.18901 1.20013 1.20017 1.19680 0.91411 0.80835 1.53815 0.87048 1.44709 1.03079 1.02488 1.44456 1.78499 0.88941 1.12699 1.26189 1.19666 0.90495 0.92428 1.11936 1.18750 0.90964 0.87741 0.91540 1.22243 0.92134 1.02352 1.01126 1.21442 0.97481 0.94868 0.96720 1.21949 0.99652 0.94769 1.06321 1.22554 0.87597 0.99842 0.96129 1.67573 1.26466 1.12222 1.13273 1.19942 0.89769 0.97551 1.26287 1.17878 0.85147 0.86383 1.08228 1.40946 1.01850 1.09068 1.90099 0.91741 0.83881 0.85576 0.85851 0.83535 0.85848 0.78309 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.27 11.81 55.49 0.66 -20.61 15 2 C 0.05 1.22 5.50 -17.50 -0.10 1.13 15 3 Si 0.93 18.92 29.55 -169.99 -5.02 13.90 15 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 7 C -0.33 -8.56 10.09 -14.91 -0.15 -8.71 15 8 H 0.11 2.63 7.08 -52.48 -0.37 2.26 15 9 N -0.17 -4.70 3.74 -10.86 -0.04 -4.74 15 10 N -0.23 -6.51 10.03 33.43 0.34 -6.17 15 11 C 0.01 0.23 7.00 -82.73 -0.58 -0.35 15 12 C 0.25 5.65 6.75 -82.94 -0.56 5.09 15 13 C -0.16 -3.23 9.73 -39.08 -0.38 -3.61 15 14 C -0.08 -1.29 10.16 -39.32 -0.40 -1.69 15 15 C -0.21 -3.04 10.11 -39.35 -0.40 -3.44 15 16 C 0.10 1.60 11.17 -17.58 -0.20 1.40 15 17 N -0.48 -10.06 10.07 -9.78 -0.10 -10.16 15 18 C -0.30 -7.39 10.55 -39.43 -0.42 -7.81 15 19 C 0.25 6.01 7.94 -152.28 -1.21 4.80 15 20 N -0.87 -16.35 9.09 31.30 0.28 -16.07 15 21 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 22 H 0.14 3.12 7.83 -52.49 -0.41 2.70 15 23 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.15 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.12 2.81 8.06 -52.49 -0.42 2.39 15 27 H 0.39 6.76 8.02 -40.82 -0.33 6.44 15 28 H 0.40 6.19 8.95 -40.82 -0.37 5.82 15 LS Contribution 257.04 15.07 3.87 3.87 Total: -1.00 -31.83 257.04 -6.70 -38.53 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -2.30 Total: 14.64 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -4.38 Total: -13.18 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 1.14 Total: -57.76 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.83 -6.70 -38.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438902.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.873 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds