Wall clock time and date at job start Mon Mar 30 2020 03:06:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31320 * 1
3 3 Si 1.86798 * 120.00127 * 2 1
4 4 H 1.48502 * 109.47202 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47140 * 300.00244 * 3 2 1
6 6 H 1.48497 * 109.47040 * 60.00143 * 3 2 1
7 7 C 1.38958 * 119.99984 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00370 * 179.97438 * 7 2 1
9 9 N 1.37136 * 119.99926 * 359.97438 * 7 2 1
10 10 N 1.40075 * 126.04252 * 359.69528 * 9 7 2
11 11 C 1.31961 * 108.31644 * 180.26224 * 10 9 7
12 12 C 1.48186 * 125.85618 * 180.02562 * 11 10 9
13 13 C 1.39447 * 119.73964 * 359.97241 * 12 11 10
14 14 C 1.38370 * 119.06389 * 179.97438 * 13 12 11
15 15 C 1.38811 * 118.51555 * 359.97438 * 14 13 12
16 16 C 1.38280 * 119.38418 * 359.97438 * 15 14 13
17 17 N 1.31741 * 120.90091 * 359.74038 * 16 15 14
18 18 C 1.40880 * 108.27885 * 359.97438 * 11 10 9
19 19 C 1.35870 * 107.86033 * 0.02562 * 18 11 10
20 20 N 1.38912 * 126.18683 * 180.02562 * 19 18 11
21 21 H 0.97000 * 119.99972 * 359.97438 * 1 2 3
22 22 H 1.08001 * 120.46459 * 359.97438 * 13 12 11
23 23 H 1.07999 * 120.74303 * 180.02562 * 14 13 12
24 24 H 1.08002 * 120.30624 * 180.02562 * 15 14 13
25 25 H 1.08001 * 119.54599 * 180.02562 * 16 15 14
26 26 H 1.08002 * 126.06968 * 179.97438 * 18 11 10
27 27 H 0.97003 * 119.99745 * 179.97438 * 20 19 18
28 28 H 0.96996 * 120.00373 * 359.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3132 0.0000 0.0000
3 14 2.2472 1.6177 0.0000
4 1 3.7072 1.3463 0.0006
5 1 1.8885 2.3964 -1.2125
6 1 1.8885 2.3964 1.2125
7 6 2.0080 -1.2034 0.0005
8 1 3.0880 -1.2035 0.0001
9 7 1.3223 -2.3910 0.0016
10 7 -0.0707 -2.5385 0.0083
11 6 -0.3512 -3.8279 0.0128
12 6 -1.7093 -4.4207 0.0199
13 6 -2.8277 -3.5878 0.0229
14 6 -4.0892 -4.1562 0.0290
15 6 -4.1922 -5.5405 0.0314
16 6 -3.0410 -6.3066 0.0272
17 7 -1.8516 -5.7404 0.0157
18 6 0.8620 -4.5441 0.0086
19 6 1.8782 -3.6422 0.0019
20 7 3.2358 -3.9364 -0.0044
21 1 -0.4850 0.8401 0.0004
22 1 -2.7108 -2.5141 0.0204
23 1 -4.9739 -3.5368 0.0309
24 1 -5.1625 -6.0148 0.0357
25 1 -3.1182 -7.3839 0.0286
26 1 0.9658 -5.6191 0.0111
27 1 3.8877 -3.2181 -0.0093
28 1 3.5320 -4.8601 -0.0039
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000409438902.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:35
Heat of formation + Delta-G solvation = 117.342215 kcal
Electronic energy + Delta-G solvation = -15011.934049 eV
Core-core repulsion = 12450.651275 eV
Total energy + Delta-G solvation = -2561.282774 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.73740 -38.94398 -33.64101 -33.34503 -31.90342 -31.16634 -29.45523 -26.82010
-25.18723 -22.97434 -22.74719 -19.73956 -19.34699 -17.53597 -16.58822 -15.58666
-15.38468 -15.10579 -14.61547 -14.29456 -13.78018 -13.29856 -13.02943 -12.78642
-12.48863 -12.08302 -11.39319 -11.27649 -11.12890 -10.80010 -10.45206 -9.91885
-9.68151 -9.26807 -9.00858 -8.60740 -8.56728 -7.55498 -6.52632 -6.36197
-4.18259 1.56514 1.88187 2.98260 3.05899 3.10999 3.70587 3.79165
4.01385 4.30947 4.80256 4.91003 5.06367 5.22086 5.29337 5.53288
5.66149 5.80192 6.18564 6.34472 6.59265 6.69560 6.80643 7.03935
7.14796 7.23866 7.36993 7.71280 8.06548 8.29252 8.57563 8.68304
8.77312 9.47371 9.67579 10.45099
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.032244 B = 0.007815 C = 0.006304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.176008 B = 3581.939777 C = 4440.268608
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.778 5.778
2 C 0.048 3.952
3 Si 0.931 3.069
4 H -0.265 1.265
5 H -0.275 1.275
6 H -0.275 1.275
7 C -0.325 4.325
8 H 0.112 0.888
9 N -0.172 5.172
10 N -0.230 5.230
11 C 0.009 3.991
12 C 0.247 3.753
13 C -0.157 4.157
14 C -0.079 4.079
15 C -0.206 4.206
16 C 0.097 3.903
17 N -0.485 5.485
18 C -0.300 4.300
19 C 0.247 3.753
20 N -0.869 5.869
21 H 0.272 0.728
22 H 0.143 0.857
23 H 0.126 0.874
24 H 0.123 0.877
25 H 0.147 0.853
26 H 0.124 0.876
27 H 0.390 0.610
28 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.243 -4.821 0.041 5.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.406 5.406
2 C -0.168 4.168
3 Si 0.756 3.244
4 H -0.189 1.189
5 H -0.200 1.200
6 H -0.200 1.200
7 C -0.457 4.457
8 H 0.130 0.870
9 N 0.053 4.947
10 N -0.063 5.063
11 C -0.145 4.145
12 C 0.110 3.890
13 C -0.179 4.179
14 C -0.105 4.105
15 C -0.227 4.227
16 C -0.061 4.061
17 N -0.195 5.195
18 C -0.335 4.335
19 C 0.024 3.976
20 N -0.420 5.420
21 H 0.083 0.917
22 H 0.161 0.839
23 H 0.144 0.856
24 H 0.141 0.859
25 H 0.165 0.835
26 H 0.142 0.858
27 H 0.217 0.783
28 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges -2.257 -3.958 0.027 4.556
hybrid contribution 0.334 0.403 0.005 0.523
sum -1.923 -3.555 0.031 4.042
Atomic orbital electron populations
1.70201 1.05970 1.27538 1.36874 1.25502 0.95687 0.99891 0.95719
0.85817 0.79572 0.80644 0.78397 1.18901 1.20013 1.20017 1.19680
0.91411 0.80835 1.53815 0.87048 1.44709 1.03079 1.02488 1.44456
1.78499 0.88941 1.12699 1.26189 1.19666 0.90495 0.92428 1.11936
1.18750 0.90964 0.87741 0.91540 1.22243 0.92134 1.02352 1.01126
1.21442 0.97481 0.94868 0.96720 1.21949 0.99652 0.94769 1.06321
1.22554 0.87597 0.99842 0.96129 1.67573 1.26466 1.12222 1.13273
1.19942 0.89769 0.97551 1.26287 1.17878 0.85147 0.86383 1.08228
1.40946 1.01850 1.09068 1.90099 0.91741 0.83881 0.85576 0.85851
0.83535 0.85848 0.78309 0.77281
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -21.27 11.81 55.49 0.66 -20.61 15
2 C 0.05 1.22 5.50 -17.50 -0.10 1.13 15
3 Si 0.93 18.92 29.55 -169.99 -5.02 13.90 15
4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15
5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15
6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15
7 C -0.33 -8.56 10.09 -14.91 -0.15 -8.71 15
8 H 0.11 2.63 7.08 -52.48 -0.37 2.26 15
9 N -0.17 -4.70 3.74 -10.86 -0.04 -4.74 15
10 N -0.23 -6.51 10.03 33.43 0.34 -6.17 15
11 C 0.01 0.23 7.00 -82.73 -0.58 -0.35 15
12 C 0.25 5.65 6.75 -82.94 -0.56 5.09 15
13 C -0.16 -3.23 9.73 -39.08 -0.38 -3.61 15
14 C -0.08 -1.29 10.16 -39.32 -0.40 -1.69 15
15 C -0.21 -3.04 10.11 -39.35 -0.40 -3.44 15
16 C 0.10 1.60 11.17 -17.58 -0.20 1.40 15
17 N -0.48 -10.06 10.07 -9.78 -0.10 -10.16 15
18 C -0.30 -7.39 10.55 -39.43 -0.42 -7.81 15
19 C 0.25 6.01 7.94 -152.28 -1.21 4.80 15
20 N -0.87 -16.35 9.09 31.30 0.28 -16.07 15
21 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15
22 H 0.14 3.12 7.83 -52.49 -0.41 2.70 15
23 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15
24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15
25 H 0.15 1.85 8.06 -52.49 -0.42 1.43 15
26 H 0.12 2.81 8.06 -52.49 -0.42 2.39 15
27 H 0.39 6.76 8.02 -40.82 -0.33 6.44 15
28 H 0.40 6.19 8.95 -40.82 -0.37 5.82 15
LS Contribution 257.04 15.07 3.87 3.87
Total: -1.00 -31.83 257.04 -6.70 -38.53
By element:
Atomic # 1 Polarization: 16.94 SS G_CDS: -2.30 Total: 14.64 kcal
Atomic # 6 Polarization: -8.80 SS G_CDS: -4.38 Total: -13.18 kcal
Atomic # 7 Polarization: -58.89 SS G_CDS: 1.14 Total: -57.76 kcal
Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal
Total LS contribution 3.87 Total: 3.87 kcal
Total: -31.83 -6.70 -38.53 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000409438902.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.873 kcal
(2) G-P(sol) polarization free energy of solvation -31.830 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) 117.342 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds