Wall clock time and date at job start Mon Mar 30 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48502 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47140 * 300.00244 * 3 2 1 6 6 H 1.48497 * 109.47040 * 60.00143 * 3 2 1 7 7 C 1.38958 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00370 * 179.97438 * 7 2 1 9 9 N 1.37136 * 119.99926 * 359.97438 * 7 2 1 10 10 N 1.40075 * 126.04252 * 359.69528 * 9 7 2 11 11 C 1.31961 * 108.31644 * 180.26224 * 10 9 7 12 12 C 1.48186 * 125.85618 * 180.02562 * 11 10 9 13 13 C 1.39447 * 119.73964 * 359.97241 * 12 11 10 14 14 C 1.38370 * 119.06389 * 179.97438 * 13 12 11 15 15 C 1.38811 * 118.51555 * 359.97438 * 14 13 12 16 16 C 1.38280 * 119.38418 * 359.97438 * 15 14 13 17 17 N 1.31741 * 120.90091 * 359.74038 * 16 15 14 18 18 C 1.40880 * 108.27885 * 359.97438 * 11 10 9 19 19 C 1.35870 * 107.86033 * 0.02562 * 18 11 10 20 20 N 1.38912 * 126.18683 * 180.02562 * 19 18 11 21 21 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.46459 * 359.97438 * 13 12 11 23 23 H 1.07999 * 120.74303 * 180.02562 * 14 13 12 24 24 H 1.08002 * 120.30624 * 180.02562 * 15 14 13 25 25 H 1.08001 * 119.54599 * 180.02562 * 16 15 14 26 26 H 1.08002 * 126.06968 * 179.97438 * 18 11 10 27 27 H 0.97003 * 119.99745 * 179.97438 * 20 19 18 28 28 H 0.96996 * 120.00373 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7072 1.3463 0.0006 5 1 1.8885 2.3964 -1.2125 6 1 1.8885 2.3964 1.2125 7 6 2.0080 -1.2034 0.0005 8 1 3.0880 -1.2035 0.0001 9 7 1.3223 -2.3910 0.0016 10 7 -0.0707 -2.5385 0.0083 11 6 -0.3512 -3.8279 0.0128 12 6 -1.7093 -4.4207 0.0199 13 6 -2.8277 -3.5878 0.0229 14 6 -4.0892 -4.1562 0.0290 15 6 -4.1922 -5.5405 0.0314 16 6 -3.0410 -6.3066 0.0272 17 7 -1.8516 -5.7404 0.0157 18 6 0.8620 -4.5441 0.0086 19 6 1.8782 -3.6422 0.0019 20 7 3.2358 -3.9364 -0.0044 21 1 -0.4850 0.8401 0.0004 22 1 -2.7108 -2.5141 0.0204 23 1 -4.9739 -3.5368 0.0309 24 1 -5.1625 -6.0148 0.0357 25 1 -3.1182 -7.3839 0.0286 26 1 0.9658 -5.6191 0.0111 27 1 3.8877 -3.2181 -0.0093 28 1 3.5320 -4.8601 -0.0039 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409438902.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:35 Heat of formation + Delta-G solvation = 95.170992 kcal Electronic energy + Delta-G solvation = -15012.895465 eV Core-core repulsion = 12450.651275 eV Total energy + Delta-G solvation = -2562.244191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50470 -40.50568 -35.49416 -35.07456 -33.35327 -32.81830 -31.16774 -28.66827 -27.02767 -24.61037 -24.15577 -21.47893 -21.16568 -19.39299 -18.19946 -17.12595 -16.95706 -16.59245 -16.26991 -15.87766 -15.61314 -15.06911 -14.60786 -14.31243 -14.07732 -13.65083 -13.20358 -12.92539 -12.76839 -12.43467 -12.03321 -11.61209 -11.45091 -10.80312 -10.71571 -10.27178 -10.19646 -9.30726 -8.40796 -8.20622 -6.15912 0.09527 0.49901 1.35829 1.39219 1.56484 1.88992 2.08496 2.31763 2.54964 3.13193 3.23930 3.28212 3.73478 4.10057 4.13911 4.31275 4.35808 4.62681 4.88071 5.02542 5.19567 5.21413 5.32153 5.37945 5.43670 5.85820 5.97952 6.21207 6.53599 6.80177 7.10969 7.24767 7.62683 7.78765 8.60101 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.007815 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.176008 B = 3581.939777 C = 4440.268608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C -0.003 4.003 3 Si 1.013 2.987 4 H -0.245 1.245 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.359 4.359 8 H 0.131 0.869 9 N -0.202 5.202 10 N -0.277 5.277 11 C 0.003 3.997 12 C 0.204 3.796 13 C -0.176 4.176 14 C -0.073 4.073 15 C -0.176 4.176 16 C 0.091 3.909 17 N -0.505 5.505 18 C -0.323 4.323 19 C 0.249 3.751 20 N -0.848 5.848 21 H 0.273 0.727 22 H 0.114 0.886 23 H 0.163 0.837 24 H 0.178 0.822 25 H 0.190 0.810 26 H 0.137 0.863 27 H 0.399 0.601 28 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 -6.057 0.051 6.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.214 4.214 3 Si 0.833 3.167 4 H -0.168 1.168 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.148 0.852 9 N 0.021 4.979 10 N -0.109 5.109 11 C -0.153 4.153 12 C 0.068 3.932 13 C -0.198 4.198 14 C -0.098 4.098 15 C -0.196 4.196 16 C -0.067 4.067 17 N -0.216 5.216 18 C -0.358 4.358 19 C 0.024 3.976 20 N -0.402 5.402 21 H 0.083 0.917 22 H 0.133 0.867 23 H 0.181 0.819 24 H 0.195 0.805 25 H 0.207 0.793 26 H 0.154 0.846 27 H 0.228 0.772 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.073 -5.204 0.037 6.043 hybrid contribution 0.407 0.519 0.002 0.659 sum -2.666 -4.685 0.039 5.391 Atomic orbital electron populations 1.70380 1.08023 1.28524 1.38752 1.26657 0.96518 1.03660 0.94560 0.84620 0.78929 0.75059 0.78108 1.16834 1.19861 1.19877 1.20310 0.92513 0.81264 1.54846 0.85152 1.44929 1.03075 1.03528 1.46329 1.78395 0.90186 1.14253 1.28038 1.20379 0.92754 0.92152 1.10002 1.18675 0.90181 0.89115 0.95219 1.22138 0.93832 1.00953 1.02881 1.21870 0.96646 0.96392 0.94910 1.22532 1.01458 0.93748 1.01824 1.23396 0.86804 1.02037 0.94506 1.67510 1.29183 1.11117 1.13831 1.20163 0.89707 0.98191 1.27784 1.18260 0.87126 0.85696 1.06511 1.40867 0.99840 1.10518 1.88929 0.91693 0.86746 0.81921 0.80478 0.79286 0.84565 0.77233 0.75262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.62 11.81 21.66 0.26 -47.36 15 2 C 0.00 -0.18 5.50 84.94 0.47 0.29 15 3 Si 1.01 39.46 29.55 68.60 2.03 41.48 15 4 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 6 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 7 C -0.36 -19.44 10.09 84.04 0.85 -18.59 15 8 H 0.13 6.20 7.08 -2.91 -0.02 6.18 15 9 N -0.20 -11.55 3.74 -188.26 -0.70 -12.25 15 10 N -0.28 -16.58 10.03 -48.14 -0.48 -17.06 15 11 C 0.00 0.15 7.00 42.42 0.30 0.45 15 12 C 0.20 9.58 6.75 41.95 0.28 9.87 15 13 C -0.18 -7.41 9.73 22.59 0.22 -7.19 15 14 C -0.07 -2.18 10.16 22.44 0.23 -1.95 15 15 C -0.18 -4.34 10.11 22.42 0.23 -4.11 15 16 C 0.09 2.67 11.17 84.72 0.95 3.62 15 17 N -0.51 -20.60 10.07 -184.86 -1.86 -22.46 15 18 C -0.32 -16.42 10.55 22.37 0.24 -16.18 15 19 C 0.25 12.46 7.94 130.93 1.04 13.49 15 20 N -0.85 -31.60 9.09 -54.88 -0.50 -32.09 15 21 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15 22 H 0.11 5.37 7.83 -2.91 -0.02 5.35 15 23 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15 24 H 0.18 2.59 8.06 -2.91 -0.02 2.56 15 25 H 0.19 3.81 8.06 -2.91 -0.02 3.79 15 26 H 0.14 6.33 8.06 -2.91 -0.02 6.31 15 27 H 0.40 13.54 8.02 -92.71 -0.74 12.80 15 28 H 0.42 12.46 8.95 -92.71 -0.83 11.63 15 Total: -1.00 -74.80 257.04 3.17 -71.63 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.36 Total: 38.41 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 4.79 Total: -20.30 kcal Atomic # 7 Polarization: -127.94 SS G_CDS: -3.29 Total: -131.23 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -74.80 3.17 -71.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409438902.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.802 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds