Wall clock time and date at job start Mon Mar 30 2020 03:06:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31320 * 1
3 3 Si 1.86798 * 120.00127 * 2 1
4 4 H 1.48502 * 109.47202 * 179.97438 * 3 2 1
5 5 H 1.48500 * 109.47140 * 300.00244 * 3 2 1
6 6 H 1.48497 * 109.47040 * 60.00143 * 3 2 1
7 7 C 1.38958 * 119.99984 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00370 * 179.97438 * 7 2 1
9 9 N 1.37136 * 119.99926 * 359.97438 * 7 2 1
10 10 N 1.40075 * 126.04252 * 359.69528 * 9 7 2
11 11 C 1.31961 * 108.31644 * 180.26224 * 10 9 7
12 12 C 1.48186 * 125.85618 * 180.02562 * 11 10 9
13 13 C 1.39447 * 119.73964 * 359.97241 * 12 11 10
14 14 C 1.38370 * 119.06389 * 179.97438 * 13 12 11
15 15 C 1.38811 * 118.51555 * 359.97438 * 14 13 12
16 16 C 1.38280 * 119.38418 * 359.97438 * 15 14 13
17 17 N 1.31741 * 120.90091 * 359.74038 * 16 15 14
18 18 C 1.40880 * 108.27885 * 359.97438 * 11 10 9
19 19 C 1.35870 * 107.86033 * 0.02562 * 18 11 10
20 20 N 1.38912 * 126.18683 * 180.02562 * 19 18 11
21 21 H 0.97000 * 119.99972 * 359.97438 * 1 2 3
22 22 H 1.08001 * 120.46459 * 359.97438 * 13 12 11
23 23 H 1.07999 * 120.74303 * 180.02562 * 14 13 12
24 24 H 1.08002 * 120.30624 * 180.02562 * 15 14 13
25 25 H 1.08001 * 119.54599 * 180.02562 * 16 15 14
26 26 H 1.08002 * 126.06968 * 179.97438 * 18 11 10
27 27 H 0.97003 * 119.99745 * 179.97438 * 20 19 18
28 28 H 0.96996 * 120.00373 * 359.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3132 0.0000 0.0000
3 14 2.2472 1.6177 0.0000
4 1 3.7072 1.3463 0.0006
5 1 1.8885 2.3964 -1.2125
6 1 1.8885 2.3964 1.2125
7 6 2.0080 -1.2034 0.0005
8 1 3.0880 -1.2035 0.0001
9 7 1.3223 -2.3910 0.0016
10 7 -0.0707 -2.5385 0.0083
11 6 -0.3512 -3.8279 0.0128
12 6 -1.7093 -4.4207 0.0199
13 6 -2.8277 -3.5878 0.0229
14 6 -4.0892 -4.1562 0.0290
15 6 -4.1922 -5.5405 0.0314
16 6 -3.0410 -6.3066 0.0272
17 7 -1.8516 -5.7404 0.0157
18 6 0.8620 -4.5441 0.0086
19 6 1.8782 -3.6422 0.0019
20 7 3.2358 -3.9364 -0.0044
21 1 -0.4850 0.8401 0.0004
22 1 -2.7108 -2.5141 0.0204
23 1 -4.9739 -3.5368 0.0309
24 1 -5.1625 -6.0148 0.0357
25 1 -3.1182 -7.3839 0.0286
26 1 0.9658 -5.6191 0.0111
27 1 3.8877 -3.2181 -0.0093
28 1 3.5320 -4.8601 -0.0039
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000409438902.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:35
Heat of formation + Delta-G solvation = 95.170992 kcal
Electronic energy + Delta-G solvation = -15012.895465 eV
Core-core repulsion = 12450.651275 eV
Total energy + Delta-G solvation = -2562.244191 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.086 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.50470 -40.50568 -35.49416 -35.07456 -33.35327 -32.81830 -31.16774 -28.66827
-27.02767 -24.61037 -24.15577 -21.47893 -21.16568 -19.39299 -18.19946 -17.12595
-16.95706 -16.59245 -16.26991 -15.87766 -15.61314 -15.06911 -14.60786 -14.31243
-14.07732 -13.65083 -13.20358 -12.92539 -12.76839 -12.43467 -12.03321 -11.61209
-11.45091 -10.80312 -10.71571 -10.27178 -10.19646 -9.30726 -8.40796 -8.20622
-6.15912 0.09527 0.49901 1.35829 1.39219 1.56484 1.88992 2.08496
2.31763 2.54964 3.13193 3.23930 3.28212 3.73478 4.10057 4.13911
4.31275 4.35808 4.62681 4.88071 5.02542 5.19567 5.21413 5.32153
5.37945 5.43670 5.85820 5.97952 6.21207 6.53599 6.80177 7.10969
7.24767 7.62683 7.78765 8.60101
Molecular weight = 230.09amu
Principal moments of inertia in cm(-1)
A = 0.032244 B = 0.007815 C = 0.006304
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.176008 B = 3581.939777 C = 4440.268608
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.828 5.828
2 C -0.003 4.003
3 Si 1.013 2.987
4 H -0.245 1.245
5 H -0.273 1.273
6 H -0.273 1.273
7 C -0.359 4.359
8 H 0.131 0.869
9 N -0.202 5.202
10 N -0.277 5.277
11 C 0.003 3.997
12 C 0.204 3.796
13 C -0.176 4.176
14 C -0.073 4.073
15 C -0.176 4.176
16 C 0.091 3.909
17 N -0.505 5.505
18 C -0.323 4.323
19 C 0.249 3.751
20 N -0.848 5.848
21 H 0.273 0.727
22 H 0.114 0.886
23 H 0.163 0.837
24 H 0.178 0.822
25 H 0.190 0.810
26 H 0.137 0.863
27 H 0.399 0.601
28 H 0.416 0.584
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.105 -6.057 0.051 6.807
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.457 5.457
2 C -0.214 4.214
3 Si 0.833 3.167
4 H -0.168 1.168
5 H -0.199 1.199
6 H -0.199 1.199
7 C -0.489 4.489
8 H 0.148 0.852
9 N 0.021 4.979
10 N -0.109 5.109
11 C -0.153 4.153
12 C 0.068 3.932
13 C -0.198 4.198
14 C -0.098 4.098
15 C -0.196 4.196
16 C -0.067 4.067
17 N -0.216 5.216
18 C -0.358 4.358
19 C 0.024 3.976
20 N -0.402 5.402
21 H 0.083 0.917
22 H 0.133 0.867
23 H 0.181 0.819
24 H 0.195 0.805
25 H 0.207 0.793
26 H 0.154 0.846
27 H 0.228 0.772
28 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges -3.073 -5.204 0.037 6.043
hybrid contribution 0.407 0.519 0.002 0.659
sum -2.666 -4.685 0.039 5.391
Atomic orbital electron populations
1.70380 1.08023 1.28524 1.38752 1.26657 0.96518 1.03660 0.94560
0.84620 0.78929 0.75059 0.78108 1.16834 1.19861 1.19877 1.20310
0.92513 0.81264 1.54846 0.85152 1.44929 1.03075 1.03528 1.46329
1.78395 0.90186 1.14253 1.28038 1.20379 0.92754 0.92152 1.10002
1.18675 0.90181 0.89115 0.95219 1.22138 0.93832 1.00953 1.02881
1.21870 0.96646 0.96392 0.94910 1.22532 1.01458 0.93748 1.01824
1.23396 0.86804 1.02037 0.94506 1.67510 1.29183 1.11117 1.13831
1.20163 0.89707 0.98191 1.27784 1.18260 0.87126 0.85696 1.06511
1.40867 0.99840 1.10518 1.88929 0.91693 0.86746 0.81921 0.80478
0.79286 0.84565 0.77233 0.75262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -47.62 11.81 21.66 0.26 -47.36 15
2 C 0.00 -0.18 5.50 84.94 0.47 0.29 15
3 Si 1.01 39.46 29.55 68.60 2.03 41.48 15
4 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15
5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15
6 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15
7 C -0.36 -19.44 10.09 84.04 0.85 -18.59 15
8 H 0.13 6.20 7.08 -2.91 -0.02 6.18 15
9 N -0.20 -11.55 3.74 -188.26 -0.70 -12.25 15
10 N -0.28 -16.58 10.03 -48.14 -0.48 -17.06 15
11 C 0.00 0.15 7.00 42.42 0.30 0.45 15
12 C 0.20 9.58 6.75 41.95 0.28 9.87 15
13 C -0.18 -7.41 9.73 22.59 0.22 -7.19 15
14 C -0.07 -2.18 10.16 22.44 0.23 -1.95 15
15 C -0.18 -4.34 10.11 22.42 0.23 -4.11 15
16 C 0.09 2.67 11.17 84.72 0.95 3.62 15
17 N -0.51 -20.60 10.07 -184.86 -1.86 -22.46 15
18 C -0.32 -16.42 10.55 22.37 0.24 -16.18 15
19 C 0.25 12.46 7.94 130.93 1.04 13.49 15
20 N -0.85 -31.60 9.09 -54.88 -0.50 -32.09 15
21 H 0.27 14.43 8.31 -92.71 -0.77 13.66 15
22 H 0.11 5.37 7.83 -2.91 -0.02 5.35 15
23 H 0.16 3.62 8.06 -2.91 -0.02 3.60 15
24 H 0.18 2.59 8.06 -2.91 -0.02 2.56 15
25 H 0.19 3.81 8.06 -2.91 -0.02 3.79 15
26 H 0.14 6.33 8.06 -2.91 -0.02 6.31 15
27 H 0.40 13.54 8.02 -92.71 -0.74 12.80 15
28 H 0.42 12.46 8.95 -92.71 -0.83 11.63 15
Total: -1.00 -74.80 257.04 3.17 -71.63
By element:
Atomic # 1 Polarization: 38.77 SS G_CDS: -0.36 Total: 38.41 kcal
Atomic # 6 Polarization: -25.09 SS G_CDS: 4.79 Total: -20.30 kcal
Atomic # 7 Polarization: -127.94 SS G_CDS: -3.29 Total: -131.23 kcal
Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal
Total: -74.80 3.17 -71.63 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000409438902.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 166.802 kcal
(2) G-P(sol) polarization free energy of solvation -74.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) 95.171 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds