Wall clock time and date at job start Mon Mar 30 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.87192 * 2 1 4 4 C 1.54102 * 109.87906 * 121.01115 * 2 1 3 5 5 C 1.54805 * 104.19147 * 121.45181 * 4 2 1 6 6 H 1.08996 * 110.90912 * 262.68285 * 5 4 2 7 7 S 1.81398 * 110.90986 * 139.11164 * 5 4 2 8 8 C 1.81400 * 103.00418 * 175.00263 * 7 5 4 9 9 C 1.52997 * 109.47431 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47079 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00051 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99864 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00113 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46908 * 59.99805 * 14 12 10 16 16 H 1.48490 * 109.47185 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46948 * 300.00376 * 14 12 10 18 18 C 1.55001 * 102.09127 * 20.88004 * 5 4 2 19 19 O 1.43745 * 109.87840 * 238.99106 * 2 1 3 20 20 H 1.09002 * 109.47153 * 59.29695 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.29886 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.29867 * 1 2 3 23 23 H 1.08999 * 109.46824 * 60.70543 * 3 2 1 24 24 H 1.09008 * 109.47150 * 180.70266 * 3 2 1 25 25 H 1.08999 * 109.46908 * 300.69953 * 3 2 1 26 26 H 1.09002 * 110.48484 * 240.12882 * 4 2 1 27 27 H 1.08999 * 110.48988 * 2.64192 * 4 2 1 28 28 H 1.09000 * 109.46605 * 300.00316 * 8 7 5 29 29 H 1.08995 * 109.47369 * 59.99523 * 8 7 5 30 30 H 1.09005 * 109.46540 * 299.99891 * 9 8 7 31 31 H 1.08997 * 109.47148 * 59.99627 * 9 8 7 32 32 H 0.96999 * 119.99894 * 179.97438 * 13 12 10 33 33 H 1.09000 * 110.61897 * 81.47949 * 18 5 4 34 34 H 1.08998 * 110.61809 * 204.31895 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7466 1.2421 5 6 2.9195 -1.8906 0.6601 6 1 2.3539 -2.8212 0.6136 7 16 4.4395 -2.1081 1.6259 8 6 5.1993 -3.5703 0.8675 9 6 6.5136 -3.8907 1.5822 10 6 7.1445 -5.1058 0.9525 11 1 6.6571 -5.5998 0.1251 12 6 8.3446 -5.5862 1.4321 13 7 8.9385 -4.9843 2.4395 14 14 9.1270 -7.0920 0.6512 15 1 9.3966 -6.8217 -0.7839 16 1 10.4026 -7.4031 1.3449 17 1 8.2035 -8.2486 0.7720 18 6 3.2379 -1.3652 -0.7629 19 8 2.0187 -0.6964 -1.1586 20 1 -0.3633 0.5247 -0.8836 21 1 -0.3633 0.5029 0.8962 22 1 -0.3634 -1.0276 -0.0126 23 1 1.7006 1.9515 0.8962 24 1 3.1400 1.4313 -0.0126 25 1 1.6801 1.9589 -0.8836 26 1 2.6619 -0.0835 1.8575 27 1 1.2245 -1.1505 1.8226 28 1 4.5215 -4.4192 0.9563 29 1 5.3971 -3.3719 -0.1858 30 1 7.1916 -3.0417 1.4938 31 1 6.3155 -4.0892 2.6355 32 1 9.7826 -5.3225 2.7771 33 1 4.0685 -0.6599 -0.7348 34 1 3.4611 -2.1925 -1.4365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600568521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:35 Heat of formation + Delta-G solvation = -71.522805 kcal Electronic energy + Delta-G solvation = -13959.189229 eV Core-core repulsion = 11596.408197 eV Total energy + Delta-G solvation = -2362.781032 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78974 -33.71576 -33.19845 -31.90185 -30.88056 -27.55412 -26.09393 -25.14993 -22.21398 -20.89218 -20.17398 -16.66209 -16.53693 -16.05216 -15.32169 -14.66320 -14.50930 -14.10095 -13.60144 -13.48352 -13.22234 -12.75182 -12.40900 -12.21850 -11.84867 -11.73853 -11.55577 -11.40940 -11.04586 -10.92730 -10.83789 -10.53870 -10.22128 -9.73809 -9.65991 -9.48753 -9.08706 -8.43469 -7.23431 -6.07518 -4.12365 2.06072 3.12521 3.29616 3.34371 3.36805 3.82963 4.40506 4.43056 4.61726 4.74056 4.95650 4.98782 5.20875 5.28033 5.43609 5.50834 5.52756 5.64766 5.70954 5.75029 5.86204 5.93235 5.96122 6.01679 6.14302 6.14963 6.69228 6.87153 7.53720 7.62203 7.88253 8.25429 8.92329 9.51705 11.03252 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.064752 B = 0.004689 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.315762 B = 5970.327523 C = 6138.963176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.098 3.902 3 C -0.163 4.163 4 C -0.121 4.121 5 C -0.098 4.098 6 H 0.095 0.905 7 S -0.264 6.264 8 C -0.061 4.061 9 C 0.038 3.962 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.056 3.944 19 O -0.369 6.369 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 9.627 -3.904 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.058 3.942 3 C -0.221 4.221 4 C -0.159 4.159 5 C -0.227 4.227 6 H 0.113 0.887 7 S -0.035 6.035 8 C -0.209 4.209 9 C -0.001 4.001 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.724 3.276 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.023 4.023 19 O -0.288 6.288 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.148 10.240 -3.124 17.742 hybrid contribution 0.215 -1.647 -1.150 2.020 sum -13.932 8.593 -4.274 16.918 Atomic orbital electron populations 1.21903 0.93071 1.02692 1.02304 1.22103 0.94665 0.92212 0.85241 1.22256 1.02040 0.95505 1.02255 1.22868 0.99209 0.96190 0.97664 1.24640 0.98125 1.01958 0.97992 0.88708 1.86924 1.23182 1.43195 1.50194 1.23725 1.02151 0.93376 1.01675 1.18902 0.88192 0.97116 0.95884 1.21053 1.05966 1.12003 1.17239 0.92498 1.25007 0.96953 0.97242 0.94978 1.69962 1.17463 1.40363 1.25143 0.86578 0.78587 0.82956 0.79430 1.20123 1.21141 1.20146 1.24019 0.87898 0.96682 0.93679 1.88920 1.39893 1.67085 1.32931 0.91941 0.91304 0.91910 0.91598 0.91903 0.91972 0.89540 0.89813 0.91332 0.91309 0.95525 0.95544 0.92700 0.90745 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.67 37.16 0.32 -1.00 16 2 C 0.10 1.12 1.19 -90.05 -0.11 1.01 16 3 C -0.16 -1.65 8.61 37.16 0.32 -1.33 16 4 C -0.12 -1.45 5.88 -25.20 -0.15 -1.60 16 5 C -0.10 -1.40 3.63 -24.72 -0.09 -1.49 16 6 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 7 S -0.26 -4.79 21.04 -107.50 -2.26 -7.05 16 8 C -0.06 -1.28 5.88 37.16 0.22 -1.06 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 14 Si 0.90 21.36 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.06 0.78 7.14 38.21 0.27 1.05 16 19 O -0.37 -5.09 10.87 -35.23 -0.38 -5.48 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.06 7.37 -51.93 -0.38 0.68 16 27 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 28 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -29.58 293.46 -8.08 -37.67 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.81 Total: -3.17 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 0.24 Total: -16.87 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.38 Total: -5.48 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.26 Total: -7.05 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.58 -8.08 -37.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600568521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.856 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds