Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.87192 * 2 1 4 4 C 1.54102 * 109.87906 * 121.01115 * 2 1 3 5 5 C 1.54805 * 104.19147 * 121.45181 * 4 2 1 6 6 H 1.08996 * 110.90912 * 262.68285 * 5 4 2 7 7 S 1.81398 * 110.90986 * 139.11164 * 5 4 2 8 8 C 1.81400 * 103.00418 * 175.00263 * 7 5 4 9 9 C 1.52997 * 109.47431 * 180.02562 * 8 7 5 10 10 C 1.50700 * 109.47079 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00051 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99864 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99939 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00113 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46908 * 59.99805 * 14 12 10 16 16 H 1.48490 * 109.47185 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46948 * 300.00376 * 14 12 10 18 18 C 1.55001 * 102.09127 * 20.88004 * 5 4 2 19 19 O 1.43745 * 109.87840 * 238.99106 * 2 1 3 20 20 H 1.09002 * 109.47153 * 59.29695 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.29886 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.29867 * 1 2 3 23 23 H 1.08999 * 109.46824 * 60.70543 * 3 2 1 24 24 H 1.09008 * 109.47150 * 180.70266 * 3 2 1 25 25 H 1.08999 * 109.46908 * 300.69953 * 3 2 1 26 26 H 1.09002 * 110.48484 * 240.12882 * 4 2 1 27 27 H 1.08999 * 110.48988 * 2.64192 * 4 2 1 28 28 H 1.09000 * 109.46605 * 300.00316 * 8 7 5 29 29 H 1.08995 * 109.47369 * 59.99523 * 8 7 5 30 30 H 1.09005 * 109.46540 * 299.99891 * 9 8 7 31 31 H 1.08997 * 109.47148 * 59.99627 * 9 8 7 32 32 H 0.96999 * 119.99894 * 179.97438 * 13 12 10 33 33 H 1.09000 * 110.61897 * 81.47949 * 18 5 4 34 34 H 1.08998 * 110.61809 * 204.31895 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0540 -0.7466 1.2421 5 6 2.9195 -1.8906 0.6601 6 1 2.3539 -2.8212 0.6136 7 16 4.4395 -2.1081 1.6259 8 6 5.1993 -3.5703 0.8675 9 6 6.5136 -3.8907 1.5822 10 6 7.1445 -5.1058 0.9525 11 1 6.6571 -5.5998 0.1251 12 6 8.3446 -5.5862 1.4321 13 7 8.9385 -4.9843 2.4395 14 14 9.1270 -7.0920 0.6512 15 1 9.3966 -6.8217 -0.7839 16 1 10.4026 -7.4031 1.3449 17 1 8.2035 -8.2486 0.7720 18 6 3.2379 -1.3652 -0.7629 19 8 2.0187 -0.6964 -1.1586 20 1 -0.3633 0.5247 -0.8836 21 1 -0.3633 0.5029 0.8962 22 1 -0.3634 -1.0276 -0.0126 23 1 1.7006 1.9515 0.8962 24 1 3.1400 1.4313 -0.0126 25 1 1.6801 1.9589 -0.8836 26 1 2.6619 -0.0835 1.8575 27 1 1.2245 -1.1505 1.8226 28 1 4.5215 -4.4192 0.9563 29 1 5.3971 -3.3719 -0.1858 30 1 7.1916 -3.0417 1.4938 31 1 6.3155 -4.0892 2.6355 32 1 9.7826 -5.3225 2.7771 33 1 4.0685 -0.6599 -0.7348 34 1 3.4611 -2.1925 -1.4365 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600568521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = -88.230698 kcal Electronic energy + Delta-G solvation = -13959.913738 eV Core-core repulsion = 11596.408197 eV Total energy + Delta-G solvation = -2363.505541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78432 -35.79225 -34.11885 -33.02585 -32.85488 -28.31688 -27.51251 -26.76060 -23.66167 -22.55233 -21.09477 -18.68122 -17.81750 -17.12714 -16.52889 -16.45037 -15.82885 -15.55076 -15.05597 -14.58026 -14.34925 -14.07570 -13.74681 -13.39158 -13.09458 -12.97485 -12.90194 -12.63902 -12.50530 -12.41185 -12.21238 -11.90332 -11.83203 -11.59033 -11.15507 -10.81083 -10.72412 -10.60711 -8.71446 -8.23804 -6.37513 0.66834 1.40963 1.44041 1.52223 1.63661 2.40164 2.85161 3.09594 3.40491 3.61702 3.85014 3.97092 4.06914 4.21128 4.23552 4.35988 4.56141 4.60779 4.69218 4.77976 4.85023 4.86031 4.88893 4.96626 4.99401 5.25208 5.36502 5.36711 5.47899 5.72518 5.90493 6.10037 6.76473 7.32176 8.87776 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.064752 B = 0.004689 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.315762 B = 5970.327523 C = 6138.963176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.092 3.908 3 C -0.162 4.162 4 C -0.117 4.117 5 C -0.087 4.087 6 H 0.101 0.899 7 S -0.282 6.282 8 C -0.053 4.053 9 C 0.044 3.956 10 C -0.544 4.544 11 H 0.067 0.933 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.971 3.029 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.058 3.942 19 O -0.380 6.380 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.077 0.923 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.266 0.734 33 H 0.068 0.932 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 9.493 -4.793 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.052 3.948 3 C -0.220 4.220 4 C -0.156 4.156 5 C -0.216 4.216 6 H 0.119 0.881 7 S -0.054 6.054 8 C -0.201 4.201 9 C 0.006 3.994 10 C -0.584 4.584 11 H 0.085 0.915 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.795 3.205 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.021 4.021 19 O -0.300 6.300 20 H 0.084 0.916 21 H 0.108 0.892 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.016 0.984 31 H 0.015 0.985 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.617 10.110 -4.020 19.033 hybrid contribution 0.595 -1.509 -0.852 1.832 sum -15.022 8.601 -4.872 17.982 Atomic orbital electron populations 1.21921 0.91163 1.03022 1.03598 1.22341 0.96111 0.92364 0.83943 1.22263 1.01173 0.95025 1.03506 1.22924 0.99201 0.95302 0.98170 1.24712 0.95887 1.03263 0.97776 0.88068 1.86927 1.25824 1.41477 1.51124 1.23365 1.00037 0.95186 1.01502 1.18675 0.90325 0.95700 0.94704 1.21516 1.06521 1.12734 1.17588 0.91506 1.26006 0.97574 1.00596 0.95370 1.70105 1.17997 1.42257 1.26725 0.85416 0.77571 0.78841 0.78720 1.18969 1.20810 1.18991 1.23934 0.88067 0.96713 0.93382 1.88921 1.39583 1.67362 1.34161 0.91561 0.89178 0.92051 0.89715 0.93267 0.91424 0.89824 0.87983 0.90652 0.90463 0.98435 0.98495 0.92540 0.91388 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.67 71.98 0.62 -1.55 16 2 C 0.09 1.89 1.19 -10.42 -0.01 1.87 16 3 C -0.16 -2.95 8.61 71.98 0.62 -2.33 16 4 C -0.12 -2.56 5.88 31.58 0.19 -2.38 16 5 C -0.09 -2.37 3.63 31.89 0.12 -2.25 16 6 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 7 S -0.28 -10.21 21.04 -56.49 -1.19 -11.40 16 8 C -0.05 -2.21 5.88 71.98 0.42 -1.79 16 9 C 0.04 2.37 4.98 29.85 0.15 2.52 16 10 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 11 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 12 C 0.00 0.18 5.46 84.65 0.46 0.64 16 13 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 14 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 18 C 0.06 1.54 7.14 72.67 0.52 2.06 16 19 O -0.38 -9.84 10.87 -148.98 -1.62 -11.46 16 20 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.90 7.37 -2.39 -0.02 1.88 16 27 H 0.10 1.87 7.70 -2.39 -0.02 1.85 16 28 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 29 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 30 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.07 1.89 8.04 -2.39 -0.02 1.87 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -63.76 293.46 3.86 -59.90 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.04 Total: 7.40 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 3.32 Total: -33.66 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.62 Total: -11.46 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -10.21 SS G_CDS: -1.19 Total: -11.40 kcal Total: -63.76 3.86 -59.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600568521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.328 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds