Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00344 * 2 1 4 4 O 1.21272 * 120.00247 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99550 * 0.02562 * 3 2 1 6 6 S 1.80996 * 109.46742 * 179.97438 * 5 3 2 7 7 C 1.76200 * 99.99832 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00280 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99937 * 180.02562 * 7 6 5 10 10 N 1.31630 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99715 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47484 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47004 * 119.99680 * 11 9 7 14 14 H 1.48496 * 109.47217 * 239.99467 * 11 9 7 15 15 C 1.46506 * 119.99926 * 180.02562 * 2 1 3 16 16 C 1.53515 * 114.16909 * 299.99610 * 15 2 1 17 17 N 1.47481 * 87.93334 * 87.62155 * 16 15 2 18 18 C 1.47488 * 87.83530 * 27.00963 * 17 16 15 19 19 H 1.09007 * 109.46911 * 269.99481 * 1 2 3 20 20 H 1.09002 * 109.47072 * 29.99494 * 1 2 3 21 21 H 1.08997 * 109.47612 * 149.99792 * 1 2 3 22 22 H 1.08998 * 109.46948 * 299.99918 * 5 3 2 23 23 H 1.09001 * 109.46935 * 60.00085 * 5 3 2 24 24 H 0.97003 * 119.99765 * 180.02562 * 10 9 7 25 25 H 1.08997 * 113.38028 * 166.92057 * 15 2 1 26 26 H 1.09004 * 113.47747 * 332.86059 * 16 15 2 27 27 H 1.08995 * 113.53124 * 202.40120 * 16 15 2 28 28 H 1.00901 * 110.99857 * 138.69928 * 17 16 15 29 29 H 1.08996 * 113.47304 * 87.75121 * 18 17 16 30 30 H 1.08997 * 113.47652 * 218.22256 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4416 5.2081 0.0026 8 1 0.3762 5.0305 0.0024 9 6 1.9284 6.5080 0.0028 10 7 3.2267 6.7246 0.0026 11 14 0.7409 7.9500 0.0036 12 1 -0.6546 7.4422 0.0032 13 1 0.9669 8.7767 1.2163 14 1 0.9663 8.7775 -1.2086 15 6 2.1975 -1.2688 -0.0006 16 6 1.9054 -2.1638 1.2120 17 7 0.7723 -2.7280 0.4552 18 6 1.5043 -2.3944 -0.7810 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3634 -0.8899 -0.5138 22 1 0.7584 2.5302 -0.8891 23 1 0.7591 2.5298 0.8908 24 1 3.5669 7.6330 0.0031 25 1 3.2578 -1.1560 -0.2269 26 1 1.6012 -1.6078 2.0989 27 1 2.6934 -2.8879 1.4183 28 1 0.7142 -3.7273 0.5826 29 1 2.1858 -3.1799 -1.1073 30 1 0.8603 -2.0340 -1.5831 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = 9.082575 kcal Electronic energy + Delta-G solvation = -13869.435581 eV Core-core repulsion = 11406.609517 eV Total energy + Delta-G solvation = -2462.826064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.52638 -38.31702 -34.38160 -32.41340 -29.56211 -27.49705 -26.18955 -25.70008 -25.38372 -20.79649 -18.54900 -17.83468 -17.18761 -16.53592 -15.65365 -15.43090 -14.79188 -14.34391 -13.88317 -13.56821 -13.37870 -12.74578 -12.49622 -12.43600 -12.00682 -11.92048 -11.30267 -11.06581 -11.02268 -10.99856 -10.73279 -9.77976 -9.48458 -9.17543 -9.05845 -8.46520 -8.20459 -6.48489 -6.20328 -3.90662 2.90893 3.02684 3.22839 3.27293 3.32511 3.61618 3.95625 4.21832 4.39711 4.79122 4.96394 5.02073 5.14442 5.15063 5.35426 5.44392 5.54118 5.62569 5.67076 5.78380 5.85529 5.93518 5.99217 6.17425 6.71316 6.92475 7.59494 7.61976 8.37108 8.56778 9.25197 10.87234 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065897 B = 0.005461 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.803344 B = 5126.370572 C = 5409.269895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.600 5.600 3 C 0.535 3.465 4 O -0.518 6.518 5 C -0.148 4.148 6 S -0.063 6.063 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.121 3.879 16 C -0.014 4.014 17 N -0.625 5.625 18 C -0.012 4.012 19 H 0.052 0.948 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.268 0.732 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.317 0.683 29 H 0.076 0.924 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 -16.978 -0.178 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.334 5.334 3 C 0.323 3.677 4 O -0.392 6.392 5 C -0.298 4.298 6 S 0.164 5.836 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.015 3.985 16 C -0.145 4.145 17 N -0.249 5.249 18 C -0.143 4.143 19 H 0.071 0.929 20 H 0.086 0.914 21 H 0.098 0.902 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.077 0.923 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.772 -16.282 -0.103 16.967 hybrid contribution -1.498 0.147 -0.007 1.505 sum -6.269 -16.135 -0.110 17.310 Atomic orbital electron populations 1.21755 0.78940 1.02936 1.02021 1.47435 1.07032 1.04144 1.74812 1.20400 0.87918 0.84500 0.74888 1.90681 1.13793 1.86821 1.47913 1.23548 1.04492 0.96958 1.04849 1.85382 1.08151 0.93391 1.96706 1.22908 0.94357 0.92181 1.58763 0.90867 1.24993 0.95668 0.98377 0.94543 1.70034 1.11744 1.21535 1.47021 0.86113 0.80366 0.81107 0.77885 1.19600 1.20571 1.20577 1.21914 0.97632 0.83496 0.95471 1.24086 0.93225 0.97965 0.99272 1.67397 1.34854 1.18252 1.04430 1.24028 0.97149 0.97536 0.95572 0.92889 0.91358 0.90155 0.89158 0.89176 0.92258 0.86956 0.89386 0.90816 0.87047 0.90624 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.33 59.85 0.56 1.61 16 2 N -0.60 -8.96 3.11 -173.61 -0.54 -9.50 16 3 C 0.53 10.47 7.69 -10.98 -0.08 10.39 16 4 O -0.52 -11.98 15.37 5.56 0.09 -11.90 16 5 C -0.15 -3.09 4.71 36.01 0.17 -2.92 16 6 S -0.06 -1.73 20.57 -107.50 -2.21 -3.95 16 7 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 11 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 C 0.12 1.51 4.66 -67.71 -0.32 1.20 16 16 C -0.01 -0.14 8.25 -7.54 -0.06 -0.20 16 17 N -0.62 -5.73 7.29 -122.64 -0.89 -6.62 16 18 C -0.01 -0.11 7.63 -7.53 -0.06 -0.16 16 19 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 20 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 21 H 0.08 0.86 5.68 -51.93 -0.29 0.57 16 22 H 0.09 1.74 7.40 -51.92 -0.38 1.36 16 23 H 0.09 1.76 8.11 -51.91 -0.42 1.34 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.11 1.55 7.29 -51.93 -0.38 1.17 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.32 2.24 8.91 -39.29 -0.35 1.89 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.86 7.25 -51.93 -0.38 0.48 16 LS Contribution 267.49 15.07 4.03 4.03 Total: -1.00 -33.64 267.49 -7.19 -40.83 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.77 Total: -0.68 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 0.41 Total: -3.12 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.70 Total: -41.71 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.64 -7.19 -40.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.912 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds