Wall clock time and date at job start Mon Mar 30 2020 02:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00344 * 2 1 4 4 O 1.21272 * 120.00247 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99550 * 0.02562 * 3 2 1 6 6 S 1.80996 * 109.46742 * 179.97438 * 5 3 2 7 7 C 1.76200 * 99.99832 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00280 * 359.97438 * 7 6 5 9 9 C 1.38805 * 119.99937 * 180.02562 * 7 6 5 10 10 N 1.31630 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99715 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47484 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47004 * 119.99680 * 11 9 7 14 14 H 1.48496 * 109.47217 * 239.99467 * 11 9 7 15 15 C 1.46506 * 119.99926 * 180.02562 * 2 1 3 16 16 C 1.53515 * 114.16909 * 299.99610 * 15 2 1 17 17 N 1.47481 * 87.93334 * 87.62155 * 16 15 2 18 18 C 1.47488 * 87.83530 * 27.00963 * 17 16 15 19 19 H 1.09007 * 109.46911 * 269.99481 * 1 2 3 20 20 H 1.09002 * 109.47072 * 29.99494 * 1 2 3 21 21 H 1.08997 * 109.47612 * 149.99792 * 1 2 3 22 22 H 1.08998 * 109.46948 * 299.99918 * 5 3 2 23 23 H 1.09001 * 109.46935 * 60.00085 * 5 3 2 24 24 H 0.97003 * 119.99765 * 180.02562 * 10 9 7 25 25 H 1.08997 * 113.38028 * 166.92057 * 15 2 1 26 26 H 1.09004 * 113.47747 * 332.86059 * 16 15 2 27 27 H 1.08995 * 113.53124 * 202.40120 * 16 15 2 28 28 H 1.00901 * 110.99857 * 138.69928 * 17 16 15 29 29 H 1.08996 * 113.47304 * 87.75121 * 18 17 16 30 30 H 1.08997 * 113.47652 * 218.22256 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4416 5.2081 0.0026 8 1 0.3762 5.0305 0.0024 9 6 1.9284 6.5080 0.0028 10 7 3.2267 6.7246 0.0026 11 14 0.7409 7.9500 0.0036 12 1 -0.6546 7.4422 0.0032 13 1 0.9669 8.7767 1.2163 14 1 0.9663 8.7775 -1.2086 15 6 2.1975 -1.2688 -0.0006 16 6 1.9054 -2.1638 1.2120 17 7 0.7723 -2.7280 0.4552 18 6 1.5043 -2.3944 -0.7810 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3634 -0.8899 -0.5138 22 1 0.7584 2.5302 -0.8891 23 1 0.7591 2.5298 0.8908 24 1 3.5669 7.6330 0.0031 25 1 3.2578 -1.1560 -0.2269 26 1 1.6012 -1.6078 2.0989 27 1 2.6934 -2.8879 1.4183 28 1 0.7142 -3.7273 0.5826 29 1 2.1858 -3.1799 -1.1073 30 1 0.8603 -2.0340 -1.5831 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:30 Heat of formation + Delta-G solvation = -17.028346 kcal Electronic energy + Delta-G solvation = -13870.567836 eV Core-core repulsion = 11406.609517 eV Total energy + Delta-G solvation = -2463.958319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.59209 -39.62559 -35.67199 -34.58698 -31.07126 -28.57840 -27.70024 -27.02222 -26.59678 -22.01655 -19.93857 -19.45312 -18.51850 -17.56203 -16.94383 -16.87339 -16.78098 -16.08597 -15.03209 -14.81211 -14.52582 -14.43572 -13.83702 -13.56554 -13.35710 -13.15375 -12.92020 -12.90875 -12.61387 -12.21846 -11.92821 -11.69151 -11.15750 -10.97188 -10.27774 -9.98137 -9.66662 -8.68093 -8.34945 -6.13497 1.24519 1.41976 1.45315 1.51359 1.57690 2.06298 2.27189 2.99418 3.14612 3.26200 3.51685 3.75259 3.99807 4.19874 4.29922 4.30553 4.41359 4.48731 4.65359 4.72187 4.80415 4.85223 5.00325 5.05434 5.41982 5.59544 6.19892 6.24783 6.34101 7.06404 7.10673 8.74746 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065897 B = 0.005461 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.803344 B = 5126.370572 C = 5409.269895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.587 5.587 3 C 0.532 3.468 4 O -0.565 6.565 5 C -0.122 4.122 6 S -0.151 6.151 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.273 1.273 15 C 0.093 3.907 16 C -0.003 4.003 17 N -0.627 5.627 18 C 0.006 3.994 19 H 0.060 0.940 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.271 0.729 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.334 0.666 29 H 0.102 0.898 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.331 -18.204 -0.290 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.319 5.319 3 C 0.320 3.680 4 O -0.443 6.443 5 C -0.273 4.273 6 S 0.076 5.924 7 C -0.694 4.694 8 H 0.101 0.899 9 C -0.190 4.190 10 N -0.548 5.548 11 Si 0.822 3.178 12 H -0.180 1.180 13 H -0.199 1.199 14 H -0.198 1.198 15 C -0.012 4.012 16 C -0.134 4.134 17 N -0.253 5.253 18 C -0.125 4.125 19 H 0.079 0.921 20 H 0.089 0.911 21 H 0.119 0.881 22 H 0.126 0.874 23 H 0.123 0.877 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.120 0.880 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.140 -17.572 -0.214 18.969 hybrid contribution -0.800 0.360 0.034 0.878 sum -7.941 -17.213 -0.180 18.957 Atomic orbital electron populations 1.21959 0.76908 1.04130 1.02860 1.47393 1.08213 1.03675 1.72630 1.20178 0.87288 0.85390 0.75158 1.90661 1.15566 1.87475 1.50641 1.23365 1.02713 0.94898 1.06347 1.85551 1.12606 0.97219 1.97028 1.23232 0.94616 0.92630 1.58889 0.89948 1.26133 0.97608 1.01660 0.93646 1.70192 1.14132 1.22461 1.48043 0.84889 0.78147 0.76684 0.78120 1.18027 1.19883 1.19847 1.22231 0.96927 0.83299 0.98745 1.23999 0.94225 0.97643 0.97580 1.67334 1.34302 1.19735 1.03952 1.23967 0.97020 0.96330 0.95213 0.92149 0.91066 0.88111 0.87353 0.87677 0.91954 0.88920 0.90875 0.88473 0.85166 0.88015 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.82 9.33 127.77 1.19 3.01 16 2 N -0.59 -16.87 3.11 -821.56 -2.56 -19.42 16 3 C 0.53 20.95 7.69 87.66 0.67 21.63 16 4 O -0.56 -27.08 15.37 -3.00 -0.05 -27.13 16 5 C -0.12 -5.08 4.71 71.24 0.34 -4.75 16 6 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 7 C -0.55 -31.57 9.50 67.96 0.65 -30.92 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 9 C 0.01 0.82 5.49 84.86 0.47 1.28 16 10 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 11 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 13 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.09 2.20 4.66 45.45 0.21 2.42 16 16 C 0.00 -0.05 8.25 83.58 0.69 0.64 16 17 N -0.63 -9.41 7.29 -541.93 -3.95 -13.36 16 18 C 0.01 0.09 7.63 83.58 0.64 0.72 16 19 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 20 H 0.07 1.53 6.44 -2.39 -0.02 1.51 16 21 H 0.10 1.83 5.68 -2.39 -0.01 1.82 16 22 H 0.11 4.08 7.40 -2.40 -0.02 4.06 16 23 H 0.11 4.02 8.11 -2.40 -0.02 4.01 16 24 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.09 2.57 7.29 -2.39 -0.02 2.55 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.33 3.43 8.91 -89.69 -0.80 2.64 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.43 7.25 -2.39 -0.02 1.42 16 Total: -1.00 -74.94 267.49 -0.20 -75.14 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.35 Total: 10.73 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.85 Total: -5.97 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -6.22 Total: -88.91 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -74.94 -0.20 -75.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.107 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds