Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48496 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00176 * 3 2 1 6 6 H 1.48501 * 109.47121 * 60.00171 * 3 2 1 7 7 C 1.37885 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99771 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47088 * 180.02562 * 11 10 9 13 13 S 1.81403 * 109.47455 * 179.97438 * 12 11 10 14 14 C 1.81396 * 103.00260 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.81007 * 302.82781 * 14 13 12 16 16 C 1.54806 * 110.93904 * 179.17259 * 14 13 12 17 17 C 1.54099 * 104.19470 * 220.91070 * 16 14 13 18 18 O 1.43889 * 107.37252 * 358.10337 * 17 16 14 19 19 C 1.44388 * 106.89814 * 26.27302 * 18 17 16 20 20 H 0.97000 * 120.00248 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47511 * 60.00344 * 9 7 2 22 22 H 1.09000 * 109.47524 * 299.99906 * 9 7 2 23 23 H 1.09002 * 109.47024 * 59.99710 * 10 9 7 24 24 H 1.09000 * 109.46673 * 300.00091 * 10 9 7 25 25 H 1.08997 * 109.47509 * 59.99402 * 11 10 9 26 26 H 1.09009 * 109.47050 * 299.99587 * 11 10 9 27 27 H 1.08997 * 109.47507 * 59.99312 * 12 11 10 28 28 H 1.09007 * 109.47250 * 299.99865 * 12 11 10 29 29 H 1.09002 * 110.48575 * 339.59187 * 16 14 13 30 30 H 1.09005 * 110.48375 * 102.23501 * 16 14 13 31 31 H 1.09001 * 109.87936 * 117.39322 * 17 16 14 32 32 H 1.09001 * 109.88030 * 238.55007 * 17 16 14 33 33 H 1.09002 * 110.61854 * 201.57804 * 19 18 17 34 34 H 1.09000 * 110.62045 * 78.73713 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 16 1.5678 -7.7210 -0.0005 14 6 2.8945 -8.9581 -0.0005 15 1 3.5544 -8.8182 -0.8567 16 6 2.3132 -10.3927 0.0203 17 6 3.2273 -11.1566 0.9979 18 8 4.2469 -10.2412 1.4370 19 6 3.6934 -8.9122 1.3269 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8540 -5.0446 -0.8913 26 1 0.8535 -5.0451 0.8887 27 1 3.1008 -6.0923 0.8898 28 1 3.1020 -6.0922 -0.8901 29 1 1.2865 -10.3830 0.3864 30 1 2.3607 -10.8380 -0.9735 31 1 2.6481 -11.5009 1.8547 32 1 3.6840 -12.0066 0.4909 33 1 4.4886 -8.1687 1.2708 34 1 3.0310 -8.7014 2.1665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703057536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = -76.610991 kcal Electronic energy + Delta-G solvation = -13439.201633 eV Core-core repulsion = 11076.199960 eV Total energy + Delta-G solvation = -2363.001673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44082 -35.22978 -32.66362 -32.45515 -29.81543 -29.24144 -25.27085 -23.19943 -22.40036 -21.39542 -20.11063 -17.21555 -16.78359 -16.20919 -15.61638 -15.31763 -15.01273 -14.46323 -14.11592 -13.50347 -13.01819 -12.85689 -12.44189 -12.14667 -11.93550 -11.83867 -11.45424 -11.12888 -11.06540 -10.69489 -10.56832 -10.44697 -10.04196 -9.92033 -9.70867 -9.30699 -9.02522 -8.35221 -7.75144 -5.99869 -4.02412 1.52250 2.49766 3.30874 3.38297 3.42355 3.65937 4.14436 4.39537 4.45880 4.63096 4.81266 4.89695 5.11718 5.18435 5.30649 5.35902 5.37791 5.46179 5.52831 5.63987 5.69564 5.96530 6.09419 6.38672 6.46338 6.69760 6.85309 7.10148 7.67941 7.81985 8.00319 8.42546 9.05081 9.61714 11.11475 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.073408 B = 0.003697 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.336086 B = 7572.674073 C = 7830.775655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.104 4.104 11 C -0.103 4.103 12 C -0.080 4.080 13 S -0.247 6.247 14 C -0.099 4.099 15 H 0.099 0.901 16 C -0.132 4.132 17 C 0.050 3.950 18 O -0.376 6.376 19 C 0.053 3.947 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -20.139 0.612 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.142 4.142 12 C -0.228 4.228 13 S -0.018 6.018 14 C -0.228 4.228 15 H 0.118 0.882 16 C -0.170 4.170 17 C -0.028 4.028 18 O -0.296 6.296 19 C -0.025 4.025 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.278 -20.264 0.669 20.721 hybrid contribution 1.478 1.242 -0.169 1.938 sum 5.756 -19.022 0.500 19.880 Atomic orbital electron populations 1.69975 1.06059 1.26487 1.50939 1.25039 0.94853 0.99285 0.95361 0.86544 0.80102 0.83820 0.77586 1.19752 1.21014 1.21000 1.21300 0.93060 0.91109 1.50446 0.92661 1.19106 0.94004 0.91233 0.97329 1.21643 0.99140 0.93194 1.00408 1.21464 0.97181 0.92708 1.02860 1.23605 1.01143 0.93361 1.04714 1.86962 1.15388 1.01602 1.97807 1.24730 0.98920 0.97245 1.01915 0.88221 1.22783 1.00632 0.92212 1.01399 1.23197 0.89641 0.93143 0.96835 1.88912 1.37468 1.16037 1.87137 1.24026 0.97666 0.85547 0.95272 0.93049 0.96536 0.96532 0.93236 0.93267 0.91479 0.91470 0.90212 0.90201 0.89507 0.89574 0.91940 0.89575 0.88664 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 11 C -0.10 -1.74 5.22 -26.74 -0.14 -1.88 16 12 C -0.08 -1.09 5.82 37.15 0.22 -0.87 16 13 S -0.25 -3.17 21.07 -107.50 -2.26 -5.43 16 14 C -0.10 -1.01 3.65 -24.72 -0.09 -1.10 16 15 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.13 -1.11 6.62 -25.21 -0.17 -1.28 16 17 C 0.05 0.41 7.70 37.73 0.29 0.70 16 18 O -0.38 -4.20 11.54 -35.23 -0.41 -4.61 16 19 C 0.05 0.55 7.06 38.21 0.27 0.82 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.09 0.75 7.82 -51.93 -0.41 0.34 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -30.50 295.27 -8.67 -39.18 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -5.86 Total: -4.81 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.31 Total: -19.10 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.39 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.41 Total: -4.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.26 Total: -5.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.50 -8.67 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703057536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.432 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds