Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48496 * 109.46956 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46906 * 300.00176 * 3 2 1 6 6 H 1.48501 * 109.47121 * 60.00171 * 3 2 1 7 7 C 1.37885 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99771 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47076 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47088 * 180.02562 * 11 10 9 13 13 S 1.81403 * 109.47455 * 179.97438 * 12 11 10 14 14 C 1.81396 * 103.00260 * 179.97438 * 13 12 11 15 15 H 1.08997 * 110.81007 * 302.82781 * 14 13 12 16 16 C 1.54806 * 110.93904 * 179.17259 * 14 13 12 17 17 C 1.54099 * 104.19470 * 220.91070 * 16 14 13 18 18 O 1.43889 * 107.37252 * 358.10337 * 17 16 14 19 19 C 1.44388 * 106.89814 * 26.27302 * 18 17 16 20 20 H 0.97000 * 120.00248 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47511 * 60.00344 * 9 7 2 22 22 H 1.09000 * 109.47524 * 299.99906 * 9 7 2 23 23 H 1.09002 * 109.47024 * 59.99710 * 10 9 7 24 24 H 1.09000 * 109.46673 * 300.00091 * 10 9 7 25 25 H 1.08997 * 109.47509 * 59.99402 * 11 10 9 26 26 H 1.09009 * 109.47050 * 299.99587 * 11 10 9 27 27 H 1.08997 * 109.47507 * 59.99312 * 12 11 10 28 28 H 1.09007 * 109.47250 * 299.99865 * 12 11 10 29 29 H 1.09002 * 110.48575 * 339.59187 * 16 14 13 30 30 H 1.09005 * 110.48375 * 102.23501 * 16 14 13 31 31 H 1.09001 * 109.87936 * 117.39322 * 17 16 14 32 32 H 1.09001 * 109.88030 * 238.55007 * 17 16 14 33 33 H 1.09002 * 110.61854 * 201.57804 * 19 18 17 34 34 H 1.09000 * 110.62045 * 78.73713 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0005 13 16 1.5678 -7.7210 -0.0005 14 6 2.8945 -8.9581 -0.0005 15 1 3.5544 -8.8182 -0.8567 16 6 2.3132 -10.3927 0.0203 17 6 3.2273 -11.1566 0.9979 18 8 4.2469 -10.2412 1.4370 19 6 3.6934 -8.9122 1.3269 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8540 -5.0446 -0.8913 26 1 0.8535 -5.0451 0.8887 27 1 3.1008 -6.0923 0.8898 28 1 3.1020 -6.0922 -0.8901 29 1 1.2865 -10.3830 0.3864 30 1 2.3607 -10.8380 -0.9735 31 1 2.6481 -11.5009 1.8547 32 1 3.6840 -12.0066 0.4909 33 1 4.4886 -8.1687 1.2708 34 1 3.0310 -8.7014 2.1665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703057536.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = -93.989360 kcal Electronic energy + Delta-G solvation = -13439.955216 eV Core-core repulsion = 11076.199960 eV Total energy + Delta-G solvation = -2363.755255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18848 -36.89373 -34.67241 -33.21583 -31.36084 -30.20884 -27.11724 -23.95110 -23.89239 -22.44950 -21.71744 -18.45630 -18.00810 -17.52896 -16.64406 -16.57850 -16.32224 -16.00281 -14.98142 -14.65414 -14.42375 -14.33927 -13.73695 -13.69188 -13.08184 -12.92798 -12.76613 -12.47804 -12.39118 -12.35291 -12.18379 -11.82591 -11.45017 -11.33060 -11.01181 -10.87294 -10.75866 -10.56522 -8.76056 -8.20417 -6.31907 0.56262 1.40177 1.40329 1.51030 1.53899 2.40904 2.93960 3.12690 3.42265 3.65094 3.90386 3.94263 3.97476 4.13996 4.18944 4.41125 4.51569 4.57636 4.69236 4.73134 4.79338 4.81743 4.86923 4.99907 5.08848 5.24952 5.26408 5.52956 5.74805 5.74923 5.85833 6.24348 6.86024 7.37664 8.91708 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.073408 B = 0.003697 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.336086 B = 7572.674073 C = 7830.775655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.092 4.092 11 C -0.094 4.094 12 C -0.073 4.073 13 S -0.270 6.270 14 C -0.090 4.090 15 H 0.106 0.894 16 C -0.128 4.128 17 C 0.046 3.954 18 O -0.395 6.395 19 C 0.053 3.947 20 H 0.263 0.737 21 H -0.010 1.010 22 H -0.010 1.010 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 -20.876 0.471 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.133 4.133 12 C -0.221 4.221 13 S -0.041 6.041 14 C -0.219 4.219 15 H 0.124 0.876 16 C -0.167 4.167 17 C -0.031 4.031 18 O -0.315 6.315 19 C -0.025 4.025 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.008 0.992 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.840 -21.012 0.529 21.815 hybrid contribution 0.954 1.396 -0.120 1.695 sum 6.794 -19.616 0.409 20.763 Atomic orbital electron populations 1.70110 1.07883 1.27723 1.51809 1.26029 0.95788 1.03523 0.94762 0.85376 0.79120 0.78645 0.77767 1.18419 1.20401 1.20378 1.21765 0.93646 0.92393 1.50333 0.91983 1.19037 0.94553 0.93283 0.94740 1.21426 0.97962 0.92704 1.01051 1.21241 0.97375 0.92581 1.02078 1.23396 1.00217 0.92588 1.05858 1.87043 1.17057 1.02118 1.97900 1.24772 0.97898 0.97025 1.02194 0.87580 1.22813 1.00397 0.91046 1.02434 1.23375 0.89350 0.93110 0.97253 1.88896 1.38608 1.16551 1.87434 1.24023 0.97761 0.85660 0.95093 0.92780 0.99179 0.99152 0.92473 0.92553 0.92353 0.92289 0.89009 0.89144 0.89763 0.87966 0.91195 0.87701 0.88136 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.09 -3.69 5.15 30.60 0.16 -3.54 16 11 C -0.09 -3.15 5.22 30.59 0.16 -2.99 16 12 C -0.07 -1.87 5.82 71.98 0.42 -1.45 16 13 S -0.27 -6.59 21.07 -56.49 -1.19 -7.78 16 14 C -0.09 -1.66 3.65 31.90 0.12 -1.54 16 15 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 16 C -0.13 -1.88 6.62 31.58 0.21 -1.67 16 17 C 0.05 0.66 7.70 72.35 0.56 1.22 16 18 O -0.40 -8.06 11.54 -148.98 -1.72 -9.78 16 19 C 0.05 1.00 7.06 72.67 0.51 1.52 16 20 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 1.30 7.82 -2.39 -0.02 1.28 16 30 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 Total: -1.00 -65.34 295.27 3.42 -61.93 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.04 Total: 4.39 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 2.98 Total: -37.87 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.28 Total: -57.38 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.72 Total: -9.78 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -6.59 SS G_CDS: -1.19 Total: -7.78 kcal Total: -65.34 3.42 -61.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703057536.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.062 kcal (2) G-P(sol) polarization free energy of solvation -65.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds