Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30093 * 124.97378 * 2 1 4 4 C 1.35899 * 109.73165 * 179.97438 * 3 2 1 5 5 C 1.39676 * 133.50552 * 179.97438 * 4 3 2 6 6 C 1.37716 * 119.78097 * 179.70871 * 5 4 3 7 7 C 1.50699 * 119.74729 * 180.29041 * 6 5 4 8 8 C 1.38730 * 120.51468 * 0.59092 * 6 5 4 9 9 C 1.50696 * 119.78214 * 179.69747 * 8 6 5 10 10 C 1.37964 * 120.43636 * 359.42425 * 8 6 5 11 11 C 1.38705 * 119.82955 * 0.27585 * 10 8 6 12 12 N 1.36536 * 124.98172 * 179.97438 * 2 1 3 13 13 C 1.37305 * 126.39799 * 0.02562 * 12 2 1 14 14 H 1.08001 * 119.99895 * 33.70234 * 13 12 2 15 15 C 1.38908 * 120.00143 * 213.69781 * 13 12 2 16 16 N 1.31388 * 119.99755 * 19.42248 * 15 13 12 17 17 Si 1.86805 * 120.00272 * 199.42645 * 15 13 12 18 18 H 1.48495 * 109.46880 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47282 * 120.00187 * 17 15 13 20 20 H 1.48504 * 109.46812 * 239.99936 * 17 15 13 21 21 H 1.09008 * 109.46833 * 93.98822 * 1 2 3 22 22 H 1.08998 * 109.46752 * 213.97737 * 1 2 3 23 23 H 1.08997 * 109.47098 * 333.98427 * 1 2 3 24 24 H 1.08003 * 120.11111 * 0.02716 * 5 4 3 25 25 H 1.08996 * 109.47101 * 270.30118 * 7 6 5 26 26 H 1.09004 * 109.46881 * 30.29560 * 7 6 5 27 27 H 1.08999 * 109.47407 * 150.30015 * 7 6 5 28 28 H 1.09000 * 109.47307 * 269.73182 * 9 8 6 29 29 H 1.08998 * 109.47150 * 149.72975 * 9 8 6 30 30 H 1.09005 * 109.47086 * 29.72712 * 9 8 6 31 31 H 1.07992 * 120.08196 * 180.25084 * 10 8 6 32 32 H 0.96997 * 119.99884 * 174.90580 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2528 1.0660 0.0000 4 6 3.5640 0.7087 0.0006 5 6 4.7580 1.4334 0.0004 6 6 5.9629 0.7664 0.0072 7 6 7.2507 1.5490 0.0136 8 6 6.0004 -0.6204 0.0020 9 6 7.3281 -1.3332 0.0027 10 6 4.8303 -1.3512 0.0018 11 6 3.6077 -0.6961 0.0011 12 7 2.2899 -1.1187 0.0005 13 6 1.8514 -2.4199 0.0006 14 1 0.9418 -2.6832 -0.5187 15 6 2.5779 -3.3975 0.6685 16 7 3.4420 -3.0545 1.5968 17 14 2.3263 -5.1998 0.2466 18 1 1.3048 -5.3195 -0.8245 19 1 3.6087 -5.7817 -0.2243 20 1 1.8648 -5.9310 1.4540 21 1 -0.3633 -0.0715 -1.0253 22 1 -0.3633 -0.8522 0.5743 23 1 -0.3633 0.9235 0.4507 24 1 4.7365 2.5132 0.0001 25 1 7.5639 1.7417 -1.0125 26 1 7.0976 2.4964 0.5307 27 1 8.0221 0.9752 0.5272 28 1 7.6487 -1.5054 -1.0248 29 1 7.2271 -2.2890 0.5168 30 1 8.0691 -0.7208 0.5166 31 1 4.8662 -2.4305 0.0018 32 1 3.8949 -3.7386 2.1144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031934348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = 52.169212 kcal Electronic energy + Delta-G solvation = -15893.967586 eV Core-core repulsion = 13433.399042 eV Total energy + Delta-G solvation = -2460.568544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.71021 -37.12740 -34.17529 -31.60711 -31.27677 -30.48476 -28.56968 -26.46584 -24.91113 -23.98185 -20.90584 -20.03790 -19.16719 -17.46124 -15.77547 -15.20687 -14.77761 -14.23204 -14.11306 -13.38998 -13.15285 -12.91967 -12.38879 -12.22368 -12.13626 -11.90038 -11.68392 -11.52715 -11.38782 -11.26284 -11.08890 -10.68183 -10.53074 -10.25036 -9.88650 -9.37240 -8.85103 -8.61595 -7.10229 -6.74174 -6.64093 -4.49353 2.16734 2.70634 2.96461 3.00492 3.05074 3.76119 4.03448 4.63169 4.72418 5.04820 5.33393 5.66925 5.79930 5.86441 6.04515 6.06742 6.08142 6.23740 6.26396 6.27783 6.37420 6.44359 6.51347 6.74496 6.85796 6.91441 7.02293 7.12695 7.25630 7.57275 7.72564 7.93463 8.11085 8.21426 8.64403 9.26777 9.44440 10.21362 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.011860 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.319937 B = 2360.329173 C = 3472.474799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.208 3.792 3 N -0.534 5.534 4 C 0.028 3.972 5 C -0.087 4.087 6 C -0.113 4.113 7 C -0.100 4.100 8 C -0.127 4.127 9 C -0.098 4.098 10 C -0.037 4.037 11 C 0.046 3.954 12 N -0.289 5.289 13 C -0.359 4.359 14 H 0.109 0.891 15 C 0.053 3.947 16 N -0.821 5.821 17 Si 0.928 3.072 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.274 1.274 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 0.415 -2.143 3.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 N -0.258 5.258 4 C -0.096 4.096 5 C -0.107 4.107 6 C -0.116 4.116 7 C -0.157 4.157 8 C -0.130 4.130 9 C -0.155 4.155 10 C -0.057 4.057 11 C -0.070 4.070 12 N 0.040 4.960 13 C -0.487 4.487 14 H 0.127 0.873 15 C -0.160 4.160 16 N -0.450 5.450 17 Si 0.752 3.248 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.200 1.200 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.696 0.971 -2.016 3.504 hybrid contribution 0.108 -1.810 0.093 1.816 sum 2.804 -0.839 -1.923 3.502 Atomic orbital electron populations 1.19975 0.86452 1.02880 1.01992 1.23265 0.95042 0.82034 1.05051 1.70154 1.00741 1.27945 1.26920 1.18864 0.91761 0.91051 1.07883 1.19655 0.89151 0.97690 1.04217 1.19086 0.93829 0.92958 1.05684 1.20657 0.95156 0.98898 1.00974 1.19158 0.94072 0.92661 1.07120 1.20623 0.94560 0.99517 1.00774 1.19865 0.88631 0.99040 0.98171 1.18644 0.86252 0.93537 1.08525 1.41178 1.03076 1.05671 1.46042 1.19693 1.12133 0.80756 1.36136 0.87328 1.25594 0.95094 1.01540 0.93728 1.70035 1.23562 1.35630 1.15784 0.85857 0.79186 0.80583 0.79155 1.18570 1.19710 1.19983 0.91630 0.90817 0.90659 0.87471 0.92518 0.92703 0.92067 0.92723 0.92658 0.92175 0.86557 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.04 10.11 36.01 0.36 -0.68 16 2 C 0.21 5.19 7.83 -154.37 -1.21 3.98 16 3 N -0.53 -13.97 11.27 -8.10 -0.09 -14.06 16 4 C 0.03 0.74 7.23 -84.66 -0.61 0.13 16 5 C -0.09 -1.98 9.73 -39.24 -0.38 -2.37 16 6 C -0.11 -2.32 5.88 -104.63 -0.61 -2.93 16 7 C -0.10 -1.56 9.58 36.01 0.35 -1.21 16 8 C -0.13 -2.74 5.88 -104.54 -0.62 -3.35 16 9 C -0.10 -1.67 9.59 36.00 0.35 -1.32 16 10 C -0.04 -0.92 8.19 -39.51 -0.32 -1.24 16 11 C 0.05 1.24 6.15 -83.86 -0.52 0.72 16 12 N -0.29 -7.76 2.86 -56.64 -0.16 -7.92 16 13 C -0.36 -9.24 9.39 -14.85 -0.14 -9.38 16 14 H 0.11 2.60 7.90 -52.49 -0.41 2.18 16 15 C 0.05 1.32 4.56 -17.49 -0.08 1.24 16 16 N -0.82 -21.46 10.52 55.49 0.58 -20.87 16 17 Si 0.93 18.62 29.60 -169.99 -5.03 13.59 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 21 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 22 H 0.07 1.35 7.90 -51.93 -0.41 0.94 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.11 2.20 8.06 -52.48 -0.42 1.77 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 27 H 0.06 0.86 5.91 -51.93 -0.31 0.55 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.06 0.89 5.90 -51.93 -0.31 0.58 16 31 H 0.12 2.96 6.24 -52.49 -0.33 2.64 16 32 H 0.28 6.76 8.32 -40.82 -0.34 6.42 16 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -30.13 268.63 -7.94 -38.07 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.85 Total: 3.56 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -3.44 Total: -16.41 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.33 Total: -42.85 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.13 -7.94 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031934348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.237 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds