Wall clock time and date at job start Mon Mar 30 2020 03:08:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.30093 * 124.97378 * 2 1
4 4 C 1.35899 * 109.73165 * 179.97438 * 3 2 1
5 5 C 1.39676 * 133.50552 * 179.97438 * 4 3 2
6 6 C 1.37716 * 119.78097 * 179.70871 * 5 4 3
7 7 C 1.50699 * 119.74729 * 180.29041 * 6 5 4
8 8 C 1.38730 * 120.51468 * 0.59092 * 6 5 4
9 9 C 1.50696 * 119.78214 * 179.69747 * 8 6 5
10 10 C 1.37964 * 120.43636 * 359.42425 * 8 6 5
11 11 C 1.38705 * 119.82955 * 0.27585 * 10 8 6
12 12 N 1.36536 * 124.98172 * 179.97438 * 2 1 3
13 13 C 1.37305 * 126.39799 * 0.02562 * 12 2 1
14 14 H 1.08001 * 119.99895 * 33.70234 * 13 12 2
15 15 C 1.38908 * 120.00143 * 213.69781 * 13 12 2
16 16 N 1.31388 * 119.99755 * 19.42248 * 15 13 12
17 17 Si 1.86805 * 120.00272 * 199.42645 * 15 13 12
18 18 H 1.48495 * 109.46880 * 359.97438 * 17 15 13
19 19 H 1.48495 * 109.47282 * 120.00187 * 17 15 13
20 20 H 1.48504 * 109.46812 * 239.99936 * 17 15 13
21 21 H 1.09008 * 109.46833 * 93.98822 * 1 2 3
22 22 H 1.08998 * 109.46752 * 213.97737 * 1 2 3
23 23 H 1.08997 * 109.47098 * 333.98427 * 1 2 3
24 24 H 1.08003 * 120.11111 * 0.02716 * 5 4 3
25 25 H 1.08996 * 109.47101 * 270.30118 * 7 6 5
26 26 H 1.09004 * 109.46881 * 30.29560 * 7 6 5
27 27 H 1.08999 * 109.47407 * 150.30015 * 7 6 5
28 28 H 1.09000 * 109.47307 * 269.73182 * 9 8 6
29 29 H 1.08998 * 109.47150 * 149.72975 * 9 8 6
30 30 H 1.09005 * 109.47086 * 29.72712 * 9 8 6
31 31 H 1.07992 * 120.08196 * 180.25084 * 10 8 6
32 32 H 0.96997 * 119.99884 * 174.90580 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2528 1.0660 0.0000
4 6 3.5640 0.7087 0.0006
5 6 4.7580 1.4334 0.0004
6 6 5.9629 0.7664 0.0072
7 6 7.2507 1.5490 0.0136
8 6 6.0004 -0.6204 0.0020
9 6 7.3281 -1.3332 0.0027
10 6 4.8303 -1.3512 0.0018
11 6 3.6077 -0.6961 0.0011
12 7 2.2899 -1.1187 0.0005
13 6 1.8514 -2.4199 0.0006
14 1 0.9418 -2.6832 -0.5187
15 6 2.5779 -3.3975 0.6685
16 7 3.4420 -3.0545 1.5968
17 14 2.3263 -5.1998 0.2466
18 1 1.3048 -5.3195 -0.8245
19 1 3.6087 -5.7817 -0.2243
20 1 1.8648 -5.9310 1.4540
21 1 -0.3633 -0.0715 -1.0253
22 1 -0.3633 -0.8522 0.5743
23 1 -0.3633 0.9235 0.4507
24 1 4.7365 2.5132 0.0001
25 1 7.5639 1.7417 -1.0125
26 1 7.0976 2.4964 0.5307
27 1 8.0221 0.9752 0.5272
28 1 7.6487 -1.5054 -1.0248
29 1 7.2271 -2.2890 0.5168
30 1 8.0691 -0.7208 0.5166
31 1 4.8662 -2.4305 0.0018
32 1 3.8949 -3.7386 2.1144
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000031934348.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:06
Heat of formation + Delta-G solvation = 52.169212 kcal
Electronic energy + Delta-G solvation = -15893.967586 eV
Core-core repulsion = 13433.399042 eV
Total energy + Delta-G solvation = -2460.568544 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.71021 -37.12740 -34.17529 -31.60711 -31.27677 -30.48476 -28.56968 -26.46584
-24.91113 -23.98185 -20.90584 -20.03790 -19.16719 -17.46124 -15.77547 -15.20687
-14.77761 -14.23204 -14.11306 -13.38998 -13.15285 -12.91967 -12.38879 -12.22368
-12.13626 -11.90038 -11.68392 -11.52715 -11.38782 -11.26284 -11.08890 -10.68183
-10.53074 -10.25036 -9.88650 -9.37240 -8.85103 -8.61595 -7.10229 -6.74174
-6.64093 -4.49353 2.16734 2.70634 2.96461 3.00492 3.05074 3.76119
4.03448 4.63169 4.72418 5.04820 5.33393 5.66925 5.79930 5.86441
6.04515 6.06742 6.08142 6.23740 6.26396 6.27783 6.37420 6.44359
6.51347 6.74496 6.85796 6.91441 7.02293 7.12695 7.25630 7.57275
7.72564 7.93463 8.11085 8.21426 8.64403 9.26777 9.44440 10.21362
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.022497 B = 0.011860 C = 0.008061
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1244.319937 B = 2360.329173 C = 3472.474799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 C 0.208 3.792
3 N -0.534 5.534
4 C 0.028 3.972
5 C -0.087 4.087
6 C -0.113 4.113
7 C -0.100 4.100
8 C -0.127 4.127
9 C -0.098 4.098
10 C -0.037 4.037
11 C 0.046 3.954
12 N -0.289 5.289
13 C -0.359 4.359
14 H 0.109 0.891
15 C 0.053 3.947
16 N -0.821 5.821
17 Si 0.928 3.072
18 H -0.262 1.262
19 H -0.272 1.272
20 H -0.274 1.274
21 H 0.065 0.935
22 H 0.073 0.927
23 H 0.075 0.925
24 H 0.107 0.893
25 H 0.056 0.944
26 H 0.054 0.946
27 H 0.061 0.939
28 H 0.054 0.946
29 H 0.054 0.946
30 H 0.059 0.941
31 H 0.117 0.883
32 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.922 0.415 -2.143 3.647
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.054 4.054
3 N -0.258 5.258
4 C -0.096 4.096
5 C -0.107 4.107
6 C -0.116 4.116
7 C -0.157 4.157
8 C -0.130 4.130
9 C -0.155 4.155
10 C -0.057 4.057
11 C -0.070 4.070
12 N 0.040 4.960
13 C -0.487 4.487
14 H 0.127 0.873
15 C -0.160 4.160
16 N -0.450 5.450
17 Si 0.752 3.248
18 H -0.186 1.186
19 H -0.197 1.197
20 H -0.200 1.200
21 H 0.084 0.916
22 H 0.092 0.908
23 H 0.093 0.907
24 H 0.125 0.875
25 H 0.075 0.925
26 H 0.073 0.927
27 H 0.079 0.921
28 H 0.073 0.927
29 H 0.073 0.927
30 H 0.078 0.922
31 H 0.134 0.866
32 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 2.696 0.971 -2.016 3.504
hybrid contribution 0.108 -1.810 0.093 1.816
sum 2.804 -0.839 -1.923 3.502
Atomic orbital electron populations
1.19975 0.86452 1.02880 1.01992 1.23265 0.95042 0.82034 1.05051
1.70154 1.00741 1.27945 1.26920 1.18864 0.91761 0.91051 1.07883
1.19655 0.89151 0.97690 1.04217 1.19086 0.93829 0.92958 1.05684
1.20657 0.95156 0.98898 1.00974 1.19158 0.94072 0.92661 1.07120
1.20623 0.94560 0.99517 1.00774 1.19865 0.88631 0.99040 0.98171
1.18644 0.86252 0.93537 1.08525 1.41178 1.03076 1.05671 1.46042
1.19693 1.12133 0.80756 1.36136 0.87328 1.25594 0.95094 1.01540
0.93728 1.70035 1.23562 1.35630 1.15784 0.85857 0.79186 0.80583
0.79155 1.18570 1.19710 1.19983 0.91630 0.90817 0.90659 0.87471
0.92518 0.92703 0.92067 0.92723 0.92658 0.92175 0.86557 0.90885
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -1.04 10.11 36.01 0.36 -0.68 16
2 C 0.21 5.19 7.83 -154.37 -1.21 3.98 16
3 N -0.53 -13.97 11.27 -8.10 -0.09 -14.06 16
4 C 0.03 0.74 7.23 -84.66 -0.61 0.13 16
5 C -0.09 -1.98 9.73 -39.24 -0.38 -2.37 16
6 C -0.11 -2.32 5.88 -104.63 -0.61 -2.93 16
7 C -0.10 -1.56 9.58 36.01 0.35 -1.21 16
8 C -0.13 -2.74 5.88 -104.54 -0.62 -3.35 16
9 C -0.10 -1.67 9.59 36.00 0.35 -1.32 16
10 C -0.04 -0.92 8.19 -39.51 -0.32 -1.24 16
11 C 0.05 1.24 6.15 -83.86 -0.52 0.72 16
12 N -0.29 -7.76 2.86 -56.64 -0.16 -7.92 16
13 C -0.36 -9.24 9.39 -14.85 -0.14 -9.38 16
14 H 0.11 2.60 7.90 -52.49 -0.41 2.18 16
15 C 0.05 1.32 4.56 -17.49 -0.08 1.24 16
16 N -0.82 -21.46 10.52 55.49 0.58 -20.87 16
17 Si 0.93 18.62 29.60 -169.99 -5.03 13.59 16
18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16
19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16
20 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16
21 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16
22 H 0.07 1.35 7.90 -51.93 -0.41 0.94 16
23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
24 H 0.11 2.20 8.06 -52.48 -0.42 1.77 16
25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16
27 H 0.06 0.86 5.91 -51.93 -0.31 0.55 16
28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
29 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16
30 H 0.06 0.89 5.90 -51.93 -0.31 0.58 16
31 H 0.12 2.96 6.24 -52.49 -0.33 2.64 16
32 H 0.28 6.76 8.32 -40.82 -0.34 6.42 16
LS Contribution 268.63 15.07 4.05 4.05
Total: -1.00 -30.13 268.63 -7.94 -38.07
By element:
Atomic # 1 Polarization: 7.41 SS G_CDS: -3.85 Total: 3.56 kcal
Atomic # 6 Polarization: -12.98 SS G_CDS: -3.44 Total: -16.41 kcal
Atomic # 7 Polarization: -43.18 SS G_CDS: 0.33 Total: -42.85 kcal
Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -30.13 -7.94 -38.07 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000031934348.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.237 kcal
(2) G-P(sol) polarization free energy of solvation -30.126 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.111 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds