Wall clock time and date at job start Mon Mar 30 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00386 * 2 1 4 4 H 1.48502 * 109.47124 * 240.00206 * 3 2 1 5 5 H 1.48504 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47188 * 119.99744 * 3 2 1 7 7 C 1.38820 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00251 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99436 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47550 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47466 * 179.97438 * 11 10 9 13 13 C 1.34239 * 126.50397 * 265.00379 * 12 11 10 14 14 N 1.36834 * 109.92851 * 180.02562 * 13 12 11 15 15 H 0.96999 * 125.05933 * 180.02562 * 14 13 12 16 16 C 1.37684 * 109.87550 * 359.97438 * 14 13 12 17 17 C 1.39123 * 133.50709 * 179.97438 * 16 14 13 18 18 C 1.37755 * 119.77684 * 180.02562 * 17 16 14 19 19 C 1.38833 * 120.66853 * 359.97438 * 18 17 16 20 20 C 1.36628 * 120.52451 * 359.97438 * 19 18 17 21 21 C 1.39623 * 119.76540 * 359.97438 * 20 19 18 22 22 H 0.96998 * 119.99968 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00586 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47513 * 59.99957 * 10 9 7 25 25 H 1.09008 * 109.47249 * 299.99997 * 10 9 7 26 26 H 1.09004 * 109.47397 * 60.00047 * 11 10 9 27 27 H 1.08998 * 109.47265 * 299.99951 * 11 10 9 28 28 H 1.07992 * 125.03293 * 359.97360 * 13 12 11 29 29 H 1.07996 * 120.11326 * 0.31780 * 17 16 14 30 30 H 1.08001 * 119.66142 * 179.97438 * 18 17 16 31 31 H 1.07992 * 119.73662 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.11150 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8171 -6.1249 -0.0007 13 6 2.1350 -6.8629 -1.0760 14 7 2.8197 -7.9822 -0.6877 15 1 3.1547 -8.6666 -1.2878 16 6 2.9630 -7.9916 0.6817 17 6 3.5612 -8.8735 1.5760 18 6 3.5386 -8.5993 2.9258 19 6 2.9247 -7.4498 3.4047 20 6 2.3321 -6.5696 2.5440 21 6 2.3442 -6.8273 1.1718 22 1 -0.4850 0.8400 0.0004 23 1 0.3556 -2.3880 0.0005 24 1 2.6846 -3.7146 0.8905 25 1 2.6846 -3.7146 -0.8895 26 1 0.4374 -4.7618 -0.8903 27 1 0.4367 -4.7622 0.8896 28 1 1.8865 -6.6110 -2.0963 29 1 4.0458 -9.7678 1.2129 30 1 4.0032 -9.2854 3.6184 31 1 2.9155 -7.2499 4.4659 32 1 1.8561 -5.6777 2.9238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034259176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:04 Heat of formation + Delta-G solvation = 60.993886 kcal Electronic energy + Delta-G solvation = -14845.436843 eV Core-core repulsion = 12385.250966 eV Total energy + Delta-G solvation = -2460.185878 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11560 -36.83087 -35.19018 -32.86761 -31.06289 -29.58289 -29.11118 -27.04656 -23.70363 -22.72705 -21.65187 -21.36594 -19.16022 -17.73304 -16.83042 -16.23000 -15.36035 -14.70813 -14.29458 -14.16844 -13.78268 -13.46250 -13.29158 -13.15684 -12.44508 -11.99383 -11.61372 -11.58427 -11.04291 -10.93115 -10.80064 -10.66547 -10.38596 -10.05836 -9.65399 -9.35256 -8.78265 -8.10844 -7.46847 -6.83037 -5.68868 -2.96825 1.24421 1.73682 2.85015 3.21937 3.49433 3.53204 3.54726 4.03805 4.66918 4.83397 4.94946 5.09936 5.23190 5.40364 5.51864 5.63190 5.70119 5.85980 5.91906 6.04089 6.15493 6.26866 6.37286 6.44812 6.57606 6.72818 6.83644 6.94258 7.01511 7.08478 7.29929 7.62836 7.77366 8.50691 9.61281 10.20818 10.55922 11.54262 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040614 B = 0.005029 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.257586 B = 5566.261250 C = 5893.461051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.161 3.839 11 C -0.055 4.055 12 C -0.146 4.146 13 C 0.041 3.959 14 N -0.599 5.599 15 H 0.412 0.588 16 C 0.094 3.906 17 C -0.138 4.138 18 C -0.102 4.102 19 C -0.154 4.154 20 C -0.061 4.061 21 C -0.101 4.101 22 H 0.255 0.745 23 H 0.383 0.617 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.169 0.831 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -19.091 1.401 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.033 3.967 11 C -0.094 4.094 12 C -0.153 4.153 13 C -0.084 4.084 14 N -0.202 5.202 15 H 0.248 0.752 16 C -0.014 4.014 17 C -0.158 4.158 18 C -0.121 4.121 19 C -0.174 4.174 20 C -0.080 4.080 21 C -0.105 4.105 22 H 0.065 0.935 23 H 0.217 0.783 24 H 0.037 0.963 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.186 0.814 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.371 -19.026 1.282 19.811 hybrid contribution 0.394 0.597 -0.355 0.798 sum 5.765 -18.429 0.927 19.332 Atomic orbital electron populations 1.69651 1.05087 1.25642 1.58082 1.24726 0.95513 0.97603 1.03265 0.86269 0.78507 0.83610 0.77834 1.21341 1.21703 1.21298 1.19207 0.91014 0.84251 1.42307 0.91314 1.42390 1.05884 1.00102 1.89532 1.20603 0.93341 0.84939 0.97817 1.20133 0.97216 0.89600 1.02408 1.20391 1.05852 0.98379 0.90694 1.21634 0.99452 0.87987 0.99345 1.41674 1.51048 1.22201 1.05307 0.75177 1.18273 1.01917 0.97599 0.83567 1.19944 1.04135 0.99377 0.92392 1.20750 0.99756 0.97488 0.94124 1.20606 1.01674 0.95570 0.99510 1.20405 0.97560 0.98862 0.91126 1.19170 1.02565 0.95272 0.93539 0.93544 0.78342 0.96340 0.96556 0.91272 0.91210 0.81353 0.86715 0.86161 0.86238 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.92 13.06 55.49 0.72 -28.20 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.48 5.60 -59.91 -0.34 -19.82 16 10 C 0.16 3.47 6.24 -4.04 -0.03 3.44 16 11 C -0.06 -0.97 5.86 -27.88 -0.16 -1.14 16 12 C -0.15 -2.30 5.57 -102.71 -0.57 -2.87 16 13 C 0.04 0.52 11.73 -16.73 -0.20 0.33 16 14 N -0.60 -6.86 6.07 -10.65 -0.06 -6.93 16 15 H 0.41 3.22 8.96 -40.82 -0.37 2.86 16 16 C 0.09 1.27 7.28 -83.99 -0.61 0.66 16 17 C -0.14 -1.61 10.08 -39.43 -0.40 -2.01 16 18 C -0.10 -1.16 10.01 -39.54 -0.40 -1.55 16 19 C -0.15 -1.94 9.97 -39.94 -0.40 -2.33 16 20 C -0.06 -0.90 10.05 -39.65 -0.40 -1.30 16 21 C -0.10 -1.58 6.35 -105.14 -0.67 -2.24 16 22 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 279.87 15.07 4.22 4.22 Total: -1.00 -33.14 279.87 -8.58 -41.73 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.03 Total: 7.70 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -4.07 Total: -16.59 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.32 Total: -54.95 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.14 -8.58 -41.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034259176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.721 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds