Wall clock time and date at job start Mon Mar 30 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00386 * 2 1 4 4 H 1.48502 * 109.47124 * 240.00206 * 3 2 1 5 5 H 1.48504 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47188 * 119.99744 * 3 2 1 7 7 C 1.38820 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00251 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99436 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99936 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47550 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47466 * 179.97438 * 11 10 9 13 13 C 1.34239 * 126.50397 * 265.00379 * 12 11 10 14 14 N 1.36834 * 109.92851 * 180.02562 * 13 12 11 15 15 H 0.96999 * 125.05933 * 180.02562 * 14 13 12 16 16 C 1.37684 * 109.87550 * 359.97438 * 14 13 12 17 17 C 1.39123 * 133.50709 * 179.97438 * 16 14 13 18 18 C 1.37755 * 119.77684 * 180.02562 * 17 16 14 19 19 C 1.38833 * 120.66853 * 359.97438 * 18 17 16 20 20 C 1.36628 * 120.52451 * 359.97438 * 19 18 17 21 21 C 1.39623 * 119.76540 * 359.97438 * 20 19 18 22 22 H 0.96998 * 119.99968 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00586 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47513 * 59.99957 * 10 9 7 25 25 H 1.09008 * 109.47249 * 299.99997 * 10 9 7 26 26 H 1.09004 * 109.47397 * 60.00047 * 11 10 9 27 27 H 1.08998 * 109.47265 * 299.99951 * 11 10 9 28 28 H 1.07992 * 125.03293 * 359.97360 * 13 12 11 29 29 H 1.07996 * 120.11326 * 0.31780 * 17 16 14 30 30 H 1.08001 * 119.66142 * 179.97438 * 18 17 16 31 31 H 1.07992 * 119.73662 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.11150 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8171 -6.1249 -0.0007 13 6 2.1350 -6.8629 -1.0760 14 7 2.8197 -7.9822 -0.6877 15 1 3.1547 -8.6666 -1.2878 16 6 2.9630 -7.9916 0.6817 17 6 3.5612 -8.8735 1.5760 18 6 3.5386 -8.5993 2.9258 19 6 2.9247 -7.4498 3.4047 20 6 2.3321 -6.5696 2.5440 21 6 2.3442 -6.8273 1.1718 22 1 -0.4850 0.8400 0.0004 23 1 0.3556 -2.3880 0.0005 24 1 2.6846 -3.7146 0.8905 25 1 2.6846 -3.7146 -0.8895 26 1 0.4374 -4.7618 -0.8903 27 1 0.4367 -4.7622 0.8896 28 1 1.8865 -6.6110 -2.0963 29 1 4.0458 -9.7678 1.2129 30 1 4.0032 -9.2854 3.6184 31 1 2.9155 -7.2499 4.4659 32 1 1.8561 -5.6777 2.9238 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034259176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:04 Heat of formation + Delta-G solvation = 40.150413 kcal Electronic energy + Delta-G solvation = -14846.340684 eV Core-core repulsion = 12385.250966 eV Total energy + Delta-G solvation = -2461.089718 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.11653 -37.81806 -37.00637 -34.52630 -32.69725 -30.92444 -30.14071 -28.51439 -25.66845 -23.70944 -23.15762 -22.61262 -20.36963 -19.16685 -18.50578 -17.22659 -16.69285 -16.29113 -15.57720 -15.52246 -15.22494 -15.01113 -14.81335 -14.56856 -13.59325 -13.44232 -12.87983 -12.82887 -12.69810 -12.60450 -12.46845 -12.12180 -12.05684 -11.81712 -11.57944 -10.92148 -10.45164 -9.10089 -9.00408 -8.50838 -7.94401 -5.24253 0.25536 0.74524 1.47240 1.51244 1.57495 1.77576 2.31058 2.57456 3.02798 3.38366 3.85785 3.91416 4.01323 4.26118 4.32156 4.44435 4.53820 4.57928 4.64245 4.79082 4.81423 4.99400 5.04901 5.17395 5.30776 5.40944 5.48586 5.63055 5.74673 5.84397 5.90135 6.27553 6.29485 6.79825 7.33501 8.08717 8.34359 9.28919 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040614 B = 0.005029 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.257586 B = 5566.261250 C = 5893.461051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.072 0.928 9 N -0.747 5.747 10 C 0.165 3.835 11 C -0.036 4.036 12 C -0.192 4.192 13 C 0.065 3.935 14 N -0.583 5.583 15 H 0.432 0.568 16 C 0.079 3.921 17 C -0.132 4.132 18 C -0.104 4.104 19 C -0.153 4.153 20 C -0.096 4.096 21 C -0.131 4.131 22 H 0.253 0.747 23 H 0.375 0.625 24 H 0.005 0.995 25 H 0.018 0.982 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.198 0.802 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 -20.798 0.958 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.266 4.266 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.390 5.390 10 C 0.039 3.961 11 C -0.075 4.075 12 C -0.199 4.199 13 C -0.062 4.062 14 N -0.188 5.188 15 H 0.272 0.728 16 C -0.028 4.028 17 C -0.153 4.153 18 C -0.123 4.123 19 C -0.172 4.172 20 C -0.115 4.115 21 C -0.135 4.135 22 H 0.061 0.939 23 H 0.207 0.793 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.215 0.785 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.005 -20.790 0.834 21.954 hybrid contribution -0.059 1.014 -0.193 1.034 sum 6.946 -19.776 0.641 20.970 Atomic orbital electron populations 1.69814 1.06628 1.26283 1.59270 1.25597 0.96456 1.01131 1.03393 0.85175 0.77235 0.78903 0.78228 1.20225 1.21739 1.20464 1.19602 0.91423 0.85512 1.41782 0.91046 1.42600 1.05682 1.01234 1.89465 1.20674 0.93918 0.84612 0.96904 1.19818 0.96217 0.89436 1.01991 1.20253 1.08761 0.98636 0.92295 1.22002 0.97162 0.87263 0.99787 1.41648 1.50013 1.22101 1.04999 0.72823 1.18529 1.02305 0.97439 0.84557 1.20382 1.02886 0.99768 0.92232 1.21177 0.99047 0.97289 0.94828 1.20911 1.00587 0.95484 1.00185 1.20479 0.99690 0.99555 0.91778 1.19437 1.03643 0.96606 0.93859 0.93850 0.79346 0.97651 0.96411 0.90669 0.92586 0.78488 0.83416 0.82760 0.84478 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.25 -14.85 9.99 84.04 0.84 -14.01 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -40.72 5.60 -343.45 -1.92 -42.64 16 10 C 0.17 7.36 6.24 86.38 0.54 7.90 16 11 C -0.04 -1.32 5.86 29.85 0.17 -1.14 16 12 C -0.19 -6.06 5.57 -18.62 -0.10 -6.16 16 13 C 0.06 1.55 11.73 83.00 0.97 2.52 16 14 N -0.58 -11.85 6.07 -187.61 -1.14 -12.99 16 15 H 0.43 5.25 8.96 -92.71 -0.83 4.42 16 16 C 0.08 2.01 7.28 39.03 0.28 2.29 16 17 C -0.13 -2.69 10.08 22.37 0.23 -2.46 16 18 C -0.10 -2.08 10.01 22.30 0.22 -1.86 16 19 C -0.15 -3.70 9.97 22.04 0.22 -3.48 16 20 C -0.10 -2.95 10.05 22.23 0.22 -2.73 16 21 C -0.13 -4.12 6.35 -20.20 -0.13 -4.25 16 22 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.37 21.33 7.67 -92.71 -0.71 20.61 16 24 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 31 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.11 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -72.04 279.87 2.78 -69.27 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.41 Total: 24.94 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.94 Total: -27.28 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -2.78 Total: -116.28 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -72.04 2.78 -69.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034259176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.417 kcal (2) G-P(sol) polarization free energy of solvation -72.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds