Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48502 * 109.47192 * 270.00132 * 3 2 1 5 5 H 1.48497 * 109.46993 * 30.00232 * 3 2 1 6 6 H 1.48498 * 109.47036 * 150.00234 * 3 2 1 7 7 C 1.37876 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00190 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47162 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46821 * 179.97438 * 10 9 7 12 12 C 1.36791 * 125.08085 * 264.97335 * 11 10 9 13 13 C 1.34243 * 109.93893 * 180.02562 * 12 11 10 14 14 C 1.46494 * 107.03344 * 0.02562 * 13 12 11 15 15 C 1.39661 * 133.92474 * 180.02562 * 14 13 12 16 16 C 1.38207 * 119.58872 * 179.97438 * 15 14 13 17 17 N 1.39966 * 119.88735 * 180.02562 * 16 15 14 18 18 C 1.39422 * 120.22695 * 0.02562 * 16 15 14 19 19 C 1.37660 * 120.60391 * 0.25685 * 18 16 15 20 20 C 1.37945 * 125.07482 * 85.00214 * 11 10 9 21 21 H 0.97000 * 119.99964 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47519 * 59.99147 * 9 7 2 23 23 H 1.09001 * 109.46672 * 299.99091 * 9 7 2 24 24 H 1.09001 * 109.47356 * 59.99953 * 10 9 7 25 25 H 1.09001 * 109.46968 * 299.99379 * 10 9 7 26 26 H 1.07995 * 125.02558 * 0.02562 * 12 11 10 27 27 H 1.08000 * 126.48261 * 180.02562 * 13 12 11 28 28 H 1.07997 * 120.21122 * 0.02562 * 15 14 13 29 29 H 0.97000 * 120.00346 * 0.02562 * 17 16 15 30 30 H 0.97000 * 119.99978 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.70349 * 179.97438 * 18 16 15 32 32 H 1.07993 * 119.99051 * 179.70543 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4866 -2.6365 -0.0001 12 6 6.2727 -2.7345 -1.1153 13 6 7.5685 -2.7043 -0.7660 14 6 7.6169 -2.5772 0.6926 15 6 8.6543 -2.4957 1.6242 16 6 8.3565 -2.3780 2.9686 17 7 9.3913 -2.2954 3.9075 18 6 7.0289 -2.3414 3.3929 19 6 5.9997 -2.4268 2.4827 20 6 6.2793 -2.5382 1.1245 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6807 0.8904 23 1 3.8751 -0.6798 -0.8896 24 1 3.6586 -3.1503 -0.8903 25 1 3.6579 -3.1506 0.8897 26 1 5.9052 -2.8230 -2.1269 27 1 8.4152 -2.7627 -1.4339 28 1 9.6828 -2.5236 1.2960 29 1 10.3155 -2.3204 3.6142 30 1 9.1841 -2.2131 4.8516 31 1 6.8059 -2.2497 4.4456 32 1 4.9750 -2.4022 2.8227 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036949969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = 52.460896 kcal Electronic energy + Delta-G solvation = -15149.764807 eV Core-core repulsion = 12689.208911 eV Total energy + Delta-G solvation = -2460.555896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77415 -37.44875 -34.15310 -33.08893 -32.21939 -30.13226 -28.28409 -27.46060 -24.68167 -22.43337 -21.31114 -20.68268 -19.59663 -17.30971 -16.70536 -16.43646 -15.89945 -15.01303 -14.61721 -13.93969 -13.86719 -13.24746 -13.03969 -12.79900 -12.56695 -12.28194 -12.24377 -12.04205 -11.49845 -11.08202 -10.55141 -10.37465 -10.19776 -9.91385 -9.66123 -9.39105 -8.92735 -8.64939 -7.45535 -6.71574 -6.16036 -4.16836 1.49905 2.17682 3.18023 3.25552 3.33578 3.39715 3.46601 4.07138 4.32819 4.36806 5.07505 5.17938 5.23985 5.33284 5.51425 5.74739 5.83587 5.98989 6.05769 6.08566 6.24183 6.35948 6.42353 6.63469 6.68670 6.98989 7.05571 7.14439 7.24810 7.57058 7.61416 7.83458 7.91116 7.95139 8.36091 8.85349 9.45337 10.96544 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.006653 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.573265 B = 4207.539006 C = 4567.781591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.024 4.024 10 C 0.118 3.882 11 N -0.474 5.474 12 C 0.070 3.930 13 C -0.239 4.239 14 C -0.065 4.065 15 C -0.169 4.169 16 C 0.181 3.819 17 N -0.889 5.889 18 C -0.171 4.171 19 C -0.074 4.074 20 C 0.056 3.944 21 H 0.265 0.735 22 H 0.023 0.977 23 H 0.017 0.983 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.138 0.862 28 H 0.113 0.887 29 H 0.392 0.608 30 H 0.392 0.608 31 H 0.119 0.881 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.380 -4.973 3.773 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.062 4.062 10 C -0.002 4.002 11 N -0.155 5.155 12 C -0.059 4.059 13 C -0.265 4.265 14 C -0.070 4.070 15 C -0.193 4.193 16 C 0.078 3.922 17 N -0.430 5.430 18 C -0.194 4.194 19 C -0.095 4.095 20 C -0.050 4.050 21 H 0.075 0.925 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.180 0.820 27 H 0.156 0.844 28 H 0.131 0.869 29 H 0.219 0.781 30 H 0.220 0.780 31 H 0.137 0.863 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.762 -4.867 3.729 16.913 hybrid contribution 0.509 1.029 0.165 1.160 sum 16.271 -3.838 3.894 17.165 Atomic orbital electron populations 1.69898 1.06268 1.27171 1.50239 1.24949 0.94702 0.99139 0.94106 0.86805 0.80477 0.83542 0.78731 1.20134 1.21141 1.18913 1.20906 0.88593 0.94818 1.52222 0.90693 1.19925 0.97497 0.91417 0.97382 1.21995 0.74056 1.01055 1.03105 1.44484 1.06848 1.59989 1.04168 1.21825 0.90500 1.01927 0.91612 1.21439 0.95655 1.16677 0.92773 1.18894 0.91595 1.03205 0.93314 1.19643 0.97595 1.11874 0.90178 1.17394 0.88095 0.97632 0.89034 1.42310 1.06233 1.86979 1.07475 1.20206 0.90515 1.09846 0.98830 1.19913 0.99223 1.00846 0.89515 1.18147 0.90058 1.08244 0.88599 0.92486 0.95914 0.96437 0.89905 0.90311 0.82005 0.84431 0.86947 0.78052 0.78034 0.86334 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.53 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.57 4.36 -27.88 -0.12 -0.69 16 10 C 0.12 2.31 5.94 -4.04 -0.02 2.28 16 11 N -0.47 -8.76 2.78 -114.38 -0.32 -9.08 16 12 C 0.07 1.14 11.27 -16.75 -0.19 0.95 16 13 C -0.24 -3.77 11.08 -37.67 -0.42 -4.19 16 14 C -0.06 -1.12 6.37 -105.14 -0.67 -1.79 16 15 C -0.17 -2.55 9.94 -39.06 -0.39 -2.94 16 16 C 0.18 2.54 6.75 -83.71 -0.56 1.97 16 17 N -0.89 -8.94 9.10 32.43 0.30 -8.65 16 18 C -0.17 -2.54 9.86 -39.35 -0.39 -2.93 16 19 C -0.07 -1.27 9.97 -39.47 -0.39 -1.66 16 20 C 0.06 1.03 6.81 -83.89 -0.57 0.46 16 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 23 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 24 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 27 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.39 3.20 8.84 -40.82 -0.36 2.84 16 30 H 0.39 3.20 8.84 -40.82 -0.36 2.84 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -31.60 276.85 -7.94 -39.53 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.03 Total: 4.70 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -4.16 Total: -21.41 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.75 Total: -44.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.60 -7.94 -39.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036949969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.994 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds