Wall clock time and date at job start Mon Mar 30 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00033 * 2 1 4 4 H 1.48502 * 109.47192 * 270.00132 * 3 2 1 5 5 H 1.48497 * 109.46993 * 30.00232 * 3 2 1 6 6 H 1.48498 * 109.47036 * 150.00234 * 3 2 1 7 7 C 1.37876 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00190 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47162 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46821 * 179.97438 * 10 9 7 12 12 C 1.36791 * 125.08085 * 264.97335 * 11 10 9 13 13 C 1.34243 * 109.93893 * 180.02562 * 12 11 10 14 14 C 1.46494 * 107.03344 * 0.02562 * 13 12 11 15 15 C 1.39661 * 133.92474 * 180.02562 * 14 13 12 16 16 C 1.38207 * 119.58872 * 179.97438 * 15 14 13 17 17 N 1.39966 * 119.88735 * 180.02562 * 16 15 14 18 18 C 1.39422 * 120.22695 * 0.02562 * 16 15 14 19 19 C 1.37660 * 120.60391 * 0.25685 * 18 16 15 20 20 C 1.37945 * 125.07482 * 85.00214 * 11 10 9 21 21 H 0.97000 * 119.99964 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47519 * 59.99147 * 9 7 2 23 23 H 1.09001 * 109.46672 * 299.99091 * 9 7 2 24 24 H 1.09001 * 109.47356 * 59.99953 * 10 9 7 25 25 H 1.09001 * 109.46968 * 299.99379 * 10 9 7 26 26 H 1.07995 * 125.02558 * 0.02562 * 12 11 10 27 27 H 1.08000 * 126.48261 * 180.02562 * 13 12 11 28 28 H 1.07997 * 120.21122 * 0.02562 * 15 14 13 29 29 H 0.97000 * 120.00346 * 0.02562 * 17 16 15 30 30 H 0.97000 * 119.99978 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.70349 * 179.97438 * 18 16 15 32 32 H 1.07993 * 119.99051 * 179.70543 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4866 -2.6365 -0.0001 12 6 6.2727 -2.7345 -1.1153 13 6 7.5685 -2.7043 -0.7660 14 6 7.6169 -2.5772 0.6926 15 6 8.6543 -2.4957 1.6242 16 6 8.3565 -2.3780 2.9686 17 7 9.3913 -2.2954 3.9075 18 6 7.0289 -2.3414 3.3929 19 6 5.9997 -2.4268 2.4827 20 6 6.2793 -2.5382 1.1245 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6807 0.8904 23 1 3.8751 -0.6798 -0.8896 24 1 3.6586 -3.1503 -0.8903 25 1 3.6579 -3.1506 0.8897 26 1 5.9052 -2.8230 -2.1269 27 1 8.4152 -2.7627 -1.4339 28 1 9.6828 -2.5236 1.2960 29 1 10.3155 -2.3204 3.6142 30 1 9.1841 -2.2131 4.8516 31 1 6.8059 -2.2497 4.4456 32 1 4.9750 -2.4022 2.8227 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036949969.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:56 Heat of formation + Delta-G solvation = 33.130599 kcal Electronic energy + Delta-G solvation = -15150.603031 eV Core-core repulsion = 12689.208911 eV Total energy + Delta-G solvation = -2461.394120 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.01509 -38.59991 -35.91490 -34.32276 -33.91587 -31.67292 -29.62889 -28.70291 -26.37784 -23.66635 -22.98313 -21.97091 -20.90727 -19.18057 -17.98243 -17.56812 -17.17476 -16.54127 -16.09146 -15.49926 -15.35893 -14.76084 -14.47344 -14.38406 -13.88789 -13.72963 -13.48663 -13.21572 -13.09518 -12.91943 -12.16719 -12.03483 -11.85606 -11.66546 -11.51449 -10.85684 -10.80640 -10.16982 -8.65956 -8.36879 -7.85151 -6.41957 0.29617 0.96981 1.29429 1.32318 1.43704 1.95529 2.14779 2.28929 2.98454 3.11858 3.17282 3.86971 3.98506 4.12645 4.22150 4.39079 4.54803 4.63196 4.66457 4.82835 4.89657 5.08140 5.18792 5.22408 5.28103 5.48391 5.49935 5.52823 5.89311 6.05746 6.14799 6.42155 6.57769 6.66500 6.78865 7.19831 7.23686 8.79028 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.006653 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.573265 B = 4207.539006 C = 4567.781591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.018 3.982 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.531 4.531 8 H 0.046 0.954 9 C -0.014 4.014 10 C 0.131 3.869 11 N -0.488 5.488 12 C 0.055 3.945 13 C -0.236 4.236 14 C -0.083 4.083 15 C -0.178 4.178 16 C 0.186 3.814 17 N -0.872 5.872 18 C -0.171 4.171 19 C -0.099 4.099 20 C 0.021 3.979 21 H 0.269 0.731 22 H 0.011 0.989 23 H 0.018 0.982 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.188 0.812 27 H 0.166 0.834 28 H 0.135 0.865 29 H 0.405 0.595 30 H 0.404 0.596 31 H 0.142 0.858 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.092 -4.502 4.002 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.065 0.935 9 C -0.052 4.052 10 C 0.010 3.990 11 N -0.170 5.170 12 C -0.072 4.072 13 C -0.262 4.262 14 C -0.088 4.088 15 C -0.203 4.203 16 C 0.081 3.919 17 N -0.415 5.415 18 C -0.193 4.193 19 C -0.119 4.119 20 C -0.085 4.085 21 H 0.078 0.922 22 H 0.029 0.971 23 H 0.036 0.964 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.205 0.795 27 H 0.183 0.817 28 H 0.153 0.847 29 H 0.234 0.766 30 H 0.233 0.767 31 H 0.160 0.840 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.530 -4.406 3.978 19.457 hybrid contribution -0.263 0.808 0.185 0.869 sum 18.267 -3.598 4.163 19.078 Atomic orbital electron populations 1.70023 1.07938 1.28303 1.51878 1.25800 0.95462 1.02877 0.93929 0.85784 0.79123 0.79232 0.79275 1.18945 1.20468 1.18559 1.21204 0.90799 0.93761 1.51211 0.93544 1.19755 0.94716 0.94179 0.96587 1.21633 0.75510 0.98298 1.03534 1.44397 1.06039 1.61505 1.05090 1.22359 0.90683 1.01967 0.92153 1.21827 0.96332 1.15458 0.92565 1.19290 0.91561 1.03484 0.94476 1.19933 0.98266 1.11686 0.90365 1.17495 0.88645 0.96218 0.89513 1.42258 1.06072 1.85571 1.07563 1.20494 0.90543 1.08663 0.99647 1.20060 0.99605 1.02447 0.89834 1.18529 0.90953 1.09912 0.89091 0.92204 0.97087 0.96361 0.88724 0.90732 0.79495 0.81660 0.84704 0.76605 0.76650 0.84040 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 2 C 0.02 1.02 5.47 84.65 0.46 1.49 16 3 Si 0.94 44.93 27.47 68.60 1.88 46.81 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 7 C -0.53 -29.95 9.66 25.60 0.25 -29.71 16 8 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 9 C -0.01 -0.67 4.36 29.85 0.13 -0.54 16 10 C 0.13 5.18 5.94 86.38 0.51 5.69 16 11 N -0.49 -17.83 2.78 -515.78 -1.44 -19.27 16 12 C 0.06 1.71 11.27 83.01 0.94 2.65 16 13 C -0.24 -6.95 11.08 23.51 0.26 -6.69 16 14 C -0.08 -2.73 6.37 -20.20 -0.13 -2.86 16 15 C -0.18 -4.96 9.94 22.61 0.22 -4.73 16 16 C 0.19 4.75 6.75 38.12 0.26 5.01 16 17 N -0.87 -14.58 9.10 -51.30 -0.47 -15.04 16 18 C -0.17 -4.80 9.86 22.42 0.22 -4.58 16 19 C -0.10 -3.37 9.97 22.34 0.22 -3.15 16 20 C 0.02 0.75 6.81 38.97 0.27 1.02 16 21 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 22 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 23 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 24 H 0.09 3.44 8.12 -2.39 -0.02 3.42 16 25 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 28 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 29 H 0.40 5.10 8.84 -92.71 -0.82 4.28 16 30 H 0.40 5.16 8.84 -92.71 -0.82 4.34 16 31 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.11 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -68.04 276.85 3.33 -64.70 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.56 Total: 16.89 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 3.61 Total: -36.41 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -1.60 Total: -92.00 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.81 kcal Total: -68.04 3.33 -64.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036949969.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.835 kcal (2) G-P(sol) polarization free energy of solvation -68.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds