Wall clock time and date at job start Mon Mar 30 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.34675 * 119.72170 * 84.72586 * 12 11 10 14 14 C 1.40805 * 120.61858 * 179.73310 * 13 12 11 15 15 C 1.35878 * 119.77561 * 0.54211 * 14 13 12 16 16 C 1.40977 * 119.17482 * 359.73545 * 15 14 13 17 17 C 1.37987 * 133.71251 * 180.02562 * 16 15 14 18 18 N 1.33401 * 107.46073 * 180.02562 * 17 16 15 19 19 C 1.30902 * 109.87243 * 359.97438 * 18 17 16 20 20 N 1.35032 * 109.37025 * 0.02562 * 19 18 17 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 27 27 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 28 28 H 1.08009 * 119.68652 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.11537 * 180.27598 * 14 13 12 30 30 H 1.07998 * 120.41758 * 179.76071 * 15 14 13 31 31 H 1.07997 * 126.27098 * 359.97438 * 17 16 15 32 32 H 1.07998 * 125.31664 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4597 -6.1325 0.0024 13 6 2.9753 -6.5697 1.1671 14 6 3.8875 -7.6421 1.1900 15 6 4.2605 -8.2356 0.0260 16 6 3.7195 -7.7669 -1.1886 17 6 3.8805 -8.1343 -2.5089 18 7 3.1101 -7.3313 -3.2446 19 6 2.4785 -6.4872 -2.4687 20 7 2.8229 -6.7164 -1.1833 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8541 -5.0447 0.8922 27 1 0.8534 -5.0451 -0.8877 28 1 2.6835 -6.0958 2.0928 29 1 4.2926 -7.9891 2.1291 30 1 4.9623 -9.0564 0.0311 31 1 4.5148 -8.9262 -2.8789 32 1 1.7895 -5.7262 -2.8041 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039423112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:22 Heat of formation + Delta-G solvation = 63.949080 kcal Electronic energy + Delta-G solvation = -15029.299316 eV Core-core repulsion = 12569.241585 eV Total energy + Delta-G solvation = -2460.057731 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.69103 -37.70714 -35.05231 -33.32342 -32.06849 -30.51618 -28.37132 -26.92618 -24.15201 -22.76013 -22.42673 -20.98073 -20.17300 -17.78347 -16.54985 -16.10741 -15.71317 -15.60343 -14.72275 -14.51981 -14.05820 -13.82377 -13.33630 -12.68787 -12.34096 -12.22277 -11.67721 -11.63077 -11.37787 -10.90883 -10.89409 -10.58039 -10.48226 -10.18916 -9.87206 -9.51731 -9.21701 -9.03907 -8.41905 -7.34711 -6.06602 -4.09385 0.88173 1.36089 2.72003 3.18502 3.27529 3.35379 3.39524 3.47814 4.39962 4.48538 4.68400 4.81092 4.86327 5.04107 5.08329 5.29658 5.45032 5.59306 5.70246 5.75289 5.86534 6.06550 6.13503 6.25477 6.43260 6.63711 6.65431 6.70959 6.93961 7.30151 7.57345 7.68670 7.91937 7.97561 8.33932 8.97390 9.55511 11.04627 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038108 B = 0.005271 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.584624 B = 5310.590032 C = 5583.539503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.104 4.104 11 C -0.086 4.086 12 C 0.106 3.894 13 C -0.149 4.149 14 C -0.112 4.112 15 C -0.094 4.094 16 C -0.001 4.001 17 C -0.032 4.032 18 N -0.458 5.458 19 C 0.145 3.855 20 N -0.360 5.360 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.147 0.853 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.177 0.823 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 -15.435 1.785 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.123 4.123 12 C 0.004 3.996 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.187 4.187 18 N -0.171 5.171 19 C -0.130 4.130 20 N -0.031 5.031 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.165 0.835 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.194 0.806 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.435 -15.227 0.858 16.191 hybrid contribution 0.510 1.036 0.880 1.452 sum 5.945 -14.191 1.738 15.484 Atomic orbital electron populations 1.69961 1.06059 1.26623 1.50762 1.25012 0.94846 0.99302 0.95186 0.86541 0.80137 0.83727 0.77655 1.19739 1.20925 1.20949 1.21251 0.93076 0.90966 1.50757 0.92656 1.19115 0.93840 0.91130 0.97444 1.21690 0.99169 0.92277 1.01001 1.20995 0.95600 0.91571 1.04177 1.20719 0.99192 0.96193 0.83474 1.20637 1.00093 0.99113 0.97088 1.21039 0.97802 0.96108 0.98379 1.20404 1.00639 1.00959 0.89409 1.19751 0.99316 0.94768 0.97118 1.22464 1.05141 1.03796 0.87251 1.70006 1.08703 1.05360 1.33041 1.24890 1.06427 1.04505 0.77224 1.42939 1.29625 1.23346 1.07194 0.92970 0.96443 0.96329 0.93234 0.92687 0.89026 0.90636 0.83516 0.84861 0.84102 0.80615 0.77327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.00 5.13 -26.73 -0.14 -2.14 16 11 C -0.09 -1.32 5.23 -27.89 -0.15 -1.47 16 12 C 0.11 1.55 6.04 -81.52 -0.49 1.06 16 13 C -0.15 -1.87 9.59 -39.87 -0.38 -2.26 16 14 C -0.11 -1.23 10.07 -39.46 -0.40 -1.62 16 15 C -0.09 -1.07 10.11 -39.39 -0.40 -1.47 16 16 C 0.00 -0.01 6.80 -84.09 -0.57 -0.58 16 17 C -0.03 -0.45 12.02 -16.96 -0.20 -0.66 16 18 N -0.46 -7.42 11.19 -13.95 -0.16 -7.58 16 19 C 0.14 2.25 12.11 -90.05 -1.09 1.16 16 20 N -0.36 -5.53 2.94 -58.24 -0.17 -5.70 16 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 27 H 0.08 1.14 7.30 -51.93 -0.38 0.76 16 28 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.21 2.84 7.65 -52.49 -0.40 2.43 16 LS Contribution 278.83 15.07 4.20 4.20 Total: -1.00 -31.65 278.83 -8.90 -40.56 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.12 Total: -1.37 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -4.37 Total: -20.86 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.41 Total: -38.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.65 -8.90 -40.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039423112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.504 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds