Wall clock time and date at job start Mon Mar 30 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.34675 * 119.72170 * 84.72586 * 12 11 10 14 14 C 1.40805 * 120.61858 * 179.73310 * 13 12 11 15 15 C 1.35878 * 119.77561 * 0.54211 * 14 13 12 16 16 C 1.40977 * 119.17482 * 359.73545 * 15 14 13 17 17 C 1.37987 * 133.71251 * 180.02562 * 16 15 14 18 18 N 1.33401 * 107.46073 * 180.02562 * 17 16 15 19 19 C 1.30902 * 109.87243 * 359.97438 * 18 17 16 20 20 N 1.35032 * 109.37025 * 0.02562 * 19 18 17 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 27 27 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 28 28 H 1.08009 * 119.68652 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.11537 * 180.27598 * 14 13 12 30 30 H 1.07998 * 120.41758 * 179.76071 * 15 14 13 31 31 H 1.07997 * 126.27098 * 359.97438 * 17 16 15 32 32 H 1.07998 * 125.31664 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4597 -6.1325 0.0024 13 6 2.9753 -6.5697 1.1671 14 6 3.8875 -7.6421 1.1900 15 6 4.2605 -8.2356 0.0260 16 6 3.7195 -7.7669 -1.1886 17 6 3.8805 -8.1343 -2.5089 18 7 3.1101 -7.3313 -3.2446 19 6 2.4785 -6.4872 -2.4687 20 7 2.8229 -6.7164 -1.1833 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8541 -5.0447 0.8922 27 1 0.8534 -5.0451 -0.8877 28 1 2.6835 -6.0958 2.0928 29 1 4.2926 -7.9891 2.1291 30 1 4.9623 -9.0564 0.0311 31 1 4.5148 -8.9262 -2.8789 32 1 1.7895 -5.7262 -2.8041 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039423112.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:22 Heat of formation + Delta-G solvation = 47.774797 kcal Electronic energy + Delta-G solvation = -15030.000685 eV Core-core repulsion = 12569.241585 eV Total energy + Delta-G solvation = -2460.759100 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.74929 -38.78376 -36.51554 -34.90353 -33.58144 -31.82028 -29.67667 -28.31840 -25.78271 -23.99082 -23.44224 -22.47237 -21.56149 -18.85786 -18.46619 -17.30755 -16.82990 -16.57647 -16.48053 -15.92328 -15.38058 -15.01798 -14.47346 -14.36060 -14.00252 -13.35503 -13.06426 -13.02312 -12.79080 -12.63264 -12.38528 -12.29736 -11.64569 -11.57590 -11.40108 -11.30552 -11.16446 -10.57790 -10.17600 -8.38274 -8.21951 -6.33200 -0.09250 0.34106 1.38177 1.39244 1.51725 1.67757 2.06364 2.39034 2.51773 3.11173 3.38064 3.69465 3.81874 3.89216 3.99350 4.21306 4.27914 4.32467 4.54824 4.60030 4.86187 4.86752 4.97703 5.05127 5.15803 5.24185 5.34522 5.48570 5.61291 5.69551 5.76973 5.82893 6.21062 6.23504 6.83406 6.88493 7.36322 8.89086 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038108 B = 0.005271 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.584624 B = 5310.590032 C = 5583.539503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.086 4.086 11 C -0.073 4.073 12 C 0.070 3.930 13 C -0.133 4.133 14 C -0.113 4.113 15 C -0.089 4.089 16 C -0.014 4.014 17 C -0.043 4.043 18 N -0.484 5.484 19 C 0.116 3.884 20 N -0.364 5.364 21 H 0.264 0.736 22 H -0.007 1.007 23 H 0.002 0.998 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.205 0.795 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.531 -16.471 3.221 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.124 4.124 11 C -0.111 4.111 12 C -0.031 4.031 13 C -0.154 4.154 14 C -0.134 4.134 15 C -0.108 4.108 16 C -0.123 4.123 17 C -0.198 4.198 18 N -0.198 5.198 19 C -0.158 4.158 20 N -0.035 5.035 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.021 0.979 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.089 0.911 28 H 0.184 0.816 29 H 0.190 0.810 30 H 0.196 0.804 31 H 0.222 0.778 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.198 -16.266 2.299 17.935 hybrid contribution -0.010 1.283 0.488 1.373 sum 7.188 -14.983 2.786 16.850 Atomic orbital electron populations 1.70077 1.07636 1.27742 1.51634 1.25908 0.95734 1.03140 0.94713 0.85463 0.79005 0.79089 0.77893 1.18922 1.20466 1.20089 1.21698 0.93383 0.92571 1.50594 0.92666 1.19014 0.94296 0.92535 0.95407 1.21390 0.97914 0.92569 1.00544 1.20725 0.95553 0.90170 1.04632 1.20606 1.01004 0.97364 0.84122 1.21097 0.98713 0.98683 0.96884 1.21483 0.96897 0.95060 0.99929 1.20927 1.00302 1.01367 0.88226 1.20320 0.99188 0.94494 0.98329 1.23025 1.05176 1.04165 0.87389 1.69969 1.09617 1.06191 1.34002 1.24998 1.07582 1.05394 0.77862 1.43017 1.29722 1.23653 1.07105 0.92706 0.98828 0.97921 0.94466 0.92169 0.87804 0.91102 0.81640 0.80988 0.80440 0.77830 0.77074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.38 5.13 30.59 0.16 -3.22 16 11 C -0.07 -2.26 5.23 29.85 0.16 -2.10 16 12 C 0.07 1.98 6.04 40.92 0.25 2.23 16 13 C -0.13 -2.97 9.59 22.08 0.21 -2.76 16 14 C -0.11 -1.99 10.07 22.35 0.23 -1.77 16 15 C -0.09 -1.69 10.11 22.39 0.23 -1.47 16 16 C -0.01 -0.38 6.80 38.77 0.26 -0.11 16 17 C -0.04 -1.18 12.02 84.40 1.01 -0.16 16 18 N -0.48 -15.86 11.19 -198.05 -2.22 -18.08 16 19 C 0.12 3.72 12.11 180.15 2.18 5.90 16 20 N -0.36 -11.01 2.94 -338.16 -1.00 -12.01 16 21 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.10 2.90 8.11 -2.39 -0.02 2.88 16 27 H 0.07 2.22 7.30 -2.39 -0.02 2.21 16 28 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.20 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.21 6.20 7.65 -2.91 -0.02 6.18 16 Total: -1.00 -69.03 278.83 5.72 -63.31 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.10 Total: 8.12 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 5.53 Total: -31.87 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.93 Total: -85.62 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -69.03 5.72 -63.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039423112.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.081 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds