Wall clock time and date at job start Mon Mar 30 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.36037 * 126.34815 * 264.68633 * 12 11 10 14 14 N 1.30107 * 110.10182 * 179.87780 * 13 12 11 15 15 C 1.35783 * 109.64164 * 0.39107 * 14 13 12 16 16 C 1.39747 * 133.60288 * 179.76274 * 15 14 13 17 17 C 1.36600 * 119.88568 * 180.02562 * 16 15 14 18 18 C 1.38771 * 120.67065 * 359.97394 * 17 16 15 19 19 C 1.37856 * 120.45260 * 0.04742 * 18 17 16 20 20 C 1.38055 * 126.35328 * 84.99901 * 12 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 28 28 H 1.08003 * 124.94734 * 0.02562 * 13 12 11 29 29 H 1.08001 * 120.05734 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.66102 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.77568 * 180.02562 * 18 17 16 32 32 H 1.07994 * 120.15578 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4320 -6.1006 0.0005 13 6 2.8796 -6.7793 -1.0902 14 7 3.7186 -7.7052 -0.7274 15 6 3.8601 -7.6893 0.6229 16 6 4.6126 -8.4496 1.5221 17 6 4.5418 -8.1875 2.8608 18 6 3.7286 -7.1706 3.3410 19 6 2.9771 -6.4081 2.4726 20 6 3.0366 -6.6597 1.1085 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8531 -5.0451 0.8897 27 1 0.8537 -5.0446 -0.8902 28 1 2.5836 -6.5773 -2.1090 29 1 5.2485 -9.2436 1.1593 30 1 5.1246 -8.7776 3.5526 31 1 3.6839 -6.9756 4.4023 32 1 2.3462 -5.6177 2.8514 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042214058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:32 Heat of formation + Delta-G solvation = 55.150240 kcal Electronic energy + Delta-G solvation = -14945.025938 eV Core-core repulsion = 12484.586661 eV Total energy + Delta-G solvation = -2460.439277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.93646 -37.25517 -35.30435 -33.24127 -31.43160 -29.92046 -29.17402 -26.84523 -23.69438 -23.10637 -21.90374 -20.74724 -20.14517 -17.09153 -17.01624 -16.12370 -15.69024 -15.17288 -14.53810 -14.45142 -13.92710 -13.63835 -13.41770 -12.70134 -12.29211 -12.00763 -11.66880 -11.58195 -11.38799 -11.04079 -10.92549 -10.69710 -10.23982 -9.99308 -9.78669 -9.54856 -9.26377 -8.46352 -8.21121 -7.93865 -6.11440 -4.14688 1.09532 1.66392 2.86809 2.98723 3.27365 3.31999 3.34809 4.01208 4.37340 4.41246 4.72723 4.96645 5.09064 5.17922 5.25018 5.49341 5.54296 5.56373 5.68592 5.73098 5.82029 6.17322 6.35982 6.48582 6.60293 6.61996 6.69423 6.81556 6.98937 7.34322 7.48193 7.58547 7.85861 8.02626 8.27412 8.91030 9.50436 10.99692 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038691 B = 0.005144 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.517150 B = 5442.173954 C = 5736.047099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.124 4.124 11 C 0.105 3.895 12 N -0.482 5.482 13 C 0.261 3.739 14 N -0.509 5.509 15 C 0.040 3.960 16 C -0.070 4.070 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.102 4.102 20 C 0.049 3.951 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.211 0.789 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -13.675 3.177 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.162 4.162 11 C -0.016 4.016 12 N -0.170 5.170 13 C -0.025 4.025 14 N -0.228 5.228 15 C -0.078 4.078 16 C -0.090 4.090 17 C -0.153 4.153 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.061 4.061 21 H 0.072 0.928 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.227 0.773 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.579 -13.996 2.628 14.959 hybrid contribution -0.069 1.680 0.393 1.726 sum 4.509 -12.317 3.021 13.460 Atomic orbital electron populations 1.69942 1.06066 1.26953 1.50396 1.25005 0.94867 0.99334 0.95043 0.86624 0.79591 0.82901 0.78735 1.20165 1.21167 1.20170 1.21129 0.93021 0.90824 1.51293 0.92705 1.19041 0.93700 0.90946 0.97535 1.22063 0.99805 0.92762 1.01613 1.22243 0.90443 0.84680 1.04206 1.45809 1.36977 1.28649 1.05530 1.25328 0.93622 0.89752 0.93770 1.70438 1.19218 1.22213 1.10939 1.19107 1.00382 0.97847 0.90510 1.19946 0.98481 0.98878 0.91664 1.20577 1.00759 0.99178 0.94821 1.20842 0.97055 0.95967 0.99177 1.20074 1.01783 1.01235 0.89219 1.18955 0.99447 0.97870 0.89853 0.92790 0.96243 0.96302 0.92619 0.92527 0.89618 0.88856 0.77251 0.85822 0.85760 0.85546 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.38 5.48 -26.73 -0.15 -2.53 16 11 C 0.11 1.61 6.16 -4.04 -0.02 1.59 16 12 N -0.48 -7.47 2.81 -115.80 -0.32 -7.80 16 13 C 0.26 3.79 12.49 -89.79 -1.12 2.66 16 14 N -0.51 -8.41 11.27 -12.05 -0.14 -8.55 16 15 C 0.04 0.66 7.23 -84.70 -0.61 0.05 16 16 C -0.07 -0.96 10.05 -39.61 -0.40 -1.36 16 17 C -0.13 -1.56 9.96 -39.98 -0.40 -1.96 16 18 C -0.11 -1.35 10.03 -39.52 -0.40 -1.74 16 19 C -0.10 -1.47 10.05 -39.50 -0.40 -1.87 16 20 C 0.05 0.79 6.87 -83.99 -0.58 0.21 16 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 28 H 0.21 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -31.28 281.27 -9.32 -40.61 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.19 Total: -1.84 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -4.62 Total: -17.60 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.28 Total: -41.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.28 -9.32 -40.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042214058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.756 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds