Wall clock time and date at job start Mon Mar 30 2020 03:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.36037 * 126.34815 * 264.68633 * 12 11 10 14 14 N 1.30107 * 110.10182 * 179.87780 * 13 12 11 15 15 C 1.35783 * 109.64164 * 0.39107 * 14 13 12 16 16 C 1.39747 * 133.60288 * 179.76274 * 15 14 13 17 17 C 1.36600 * 119.88568 * 180.02562 * 16 15 14 18 18 C 1.38771 * 120.67065 * 359.97394 * 17 16 15 19 19 C 1.37856 * 120.45260 * 0.04742 * 18 17 16 20 20 C 1.38055 * 126.35328 * 84.99901 * 12 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 28 28 H 1.08003 * 124.94734 * 0.02562 * 13 12 11 29 29 H 1.08001 * 120.05734 * 359.97438 * 16 15 14 30 30 H 1.08001 * 119.66102 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.77568 * 180.02562 * 18 17 16 32 32 H 1.07994 * 120.15578 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4320 -6.1006 0.0005 13 6 2.8796 -6.7793 -1.0902 14 7 3.7186 -7.7052 -0.7274 15 6 3.8601 -7.6893 0.6229 16 6 4.6126 -8.4496 1.5221 17 6 4.5418 -8.1875 2.8608 18 6 3.7286 -7.1706 3.3410 19 6 2.9771 -6.4081 2.4726 20 6 3.0366 -6.6597 1.1085 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8531 -5.0451 0.8897 27 1 0.8537 -5.0446 -0.8902 28 1 2.5836 -6.5773 -2.1090 29 1 5.2485 -9.2436 1.1593 30 1 5.1246 -8.7776 3.5526 31 1 3.6839 -6.9756 4.4023 32 1 2.3462 -5.6177 2.8514 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042214058.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:32 Heat of formation + Delta-G solvation = 39.144438 kcal Electronic energy + Delta-G solvation = -14945.720002 eV Core-core repulsion = 12484.586661 eV Total energy + Delta-G solvation = -2461.133341 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.04360 -38.29966 -36.78385 -35.01254 -33.01533 -31.12826 -30.22514 -28.52247 -25.40336 -24.15222 -23.02748 -22.38135 -21.35234 -18.68091 -18.13489 -17.73880 -16.66958 -16.57351 -16.29352 -15.88994 -15.06091 -14.78264 -14.50029 -14.37443 -14.03662 -13.35577 -13.01594 -12.87097 -12.71320 -12.63664 -12.47444 -12.34271 -11.73439 -11.66182 -11.42881 -11.07908 -10.92099 -10.57958 -9.29490 -9.03568 -8.23689 -6.34276 0.04982 0.61193 1.39295 1.40645 1.48902 1.72733 1.87984 2.38924 2.95250 3.10254 3.38142 3.69645 3.76450 4.09858 4.14075 4.23011 4.39014 4.47693 4.53542 4.56400 4.78141 4.83417 4.94947 5.06344 5.27032 5.44965 5.52679 5.60504 5.60610 5.67657 5.78998 5.99784 6.16906 6.26078 6.80757 6.90221 7.35134 8.87248 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038691 B = 0.005144 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.517150 B = 5442.173954 C = 5736.047099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.106 4.106 11 C 0.118 3.882 12 N -0.488 5.488 13 C 0.260 3.740 14 N -0.535 5.535 15 C 0.011 3.989 16 C -0.084 4.084 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.125 4.125 20 C 0.023 3.977 21 H 0.265 0.735 22 H 0.006 0.994 23 H 0.000 1.000 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.115 0.885 28 H 0.245 0.755 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -14.098 3.804 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.144 4.144 11 C -0.003 4.003 12 N -0.177 5.177 13 C -0.025 4.025 14 N -0.255 5.255 15 C -0.107 4.107 16 C -0.104 4.104 17 C -0.143 4.143 18 C -0.122 4.122 19 C -0.146 4.146 20 C -0.086 4.086 21 H 0.074 0.926 22 H 0.025 0.975 23 H 0.019 0.981 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.133 0.867 28 H 0.261 0.739 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.555 -14.440 3.265 15.813 hybrid contribution -0.337 1.754 0.256 1.804 sum 5.218 -12.687 3.521 14.163 Atomic orbital electron populations 1.70051 1.07514 1.27932 1.51270 1.25856 0.95729 1.02976 0.94612 0.85592 0.78406 0.78586 0.79048 1.19374 1.20588 1.19502 1.21584 0.93291 0.92545 1.51123 0.92895 1.18905 0.94055 0.91929 0.95894 1.21746 0.98599 0.93266 1.00819 1.22000 0.89922 0.82829 1.05530 1.45775 1.37321 1.28711 1.05874 1.26044 0.92741 0.88926 0.94835 1.70417 1.20314 1.23341 1.11396 1.19567 1.01433 0.98822 0.90863 1.20308 0.98569 0.99175 0.92322 1.21017 0.99992 0.98689 0.94617 1.21286 0.95567 0.94935 1.00447 1.20323 1.02955 1.02216 0.89073 1.19320 1.00132 0.98486 0.90670 0.92626 0.97526 0.98123 0.93880 0.92750 0.89297 0.86654 0.73881 0.84423 0.82081 0.82478 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.23 9.11 25.60 0.23 -30.00 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.03 1.46 4.97 29.85 0.15 1.61 16 10 C -0.11 -4.07 5.48 30.59 0.17 -3.90 16 11 C 0.12 3.56 6.16 86.38 0.53 4.09 16 12 N -0.49 -14.87 2.81 -520.28 -1.46 -16.33 16 13 C 0.26 7.31 12.49 180.06 2.25 9.56 16 14 N -0.53 -17.47 11.27 -192.03 -2.16 -19.63 16 15 C 0.01 0.36 7.23 39.45 0.29 0.65 16 16 C -0.08 -2.18 10.05 22.25 0.22 -1.96 16 17 C -0.12 -2.55 9.96 22.01 0.22 -2.34 16 18 C -0.10 -2.27 10.03 22.31 0.22 -2.04 16 19 C -0.12 -3.50 10.05 22.32 0.22 -3.27 16 20 C 0.02 0.74 6.87 38.86 0.27 1.01 16 21 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 22 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 23 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.12 2.96 8.13 -2.39 -0.02 2.94 16 28 H 0.25 4.62 8.06 -2.91 -0.02 4.60 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -67.49 281.27 5.02 -62.47 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.09 Total: 7.96 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 5.24 Total: -25.75 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -3.34 Total: -90.03 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.49 5.02 -62.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042214058.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.613 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds