Wall clock time and date at job start Mon Mar 30 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39684 * 120.11172 * 260.27863 * 3 2 1 5 5 C 1.37975 * 119.99243 * 179.75057 * 4 3 2 6 6 C 1.38251 * 120.23529 * 0.54566 * 5 4 3 7 7 C 1.38990 * 120.22703 * 359.70927 * 6 5 4 8 8 N 1.39707 * 119.99598 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00252 * 359.97025 * 8 7 6 10 10 C 1.53005 * 109.47367 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46895 * 179.97438 * 10 9 8 12 12 C 1.50704 * 109.46472 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00248 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99249 * 180.02562 * 12 11 10 15 15 N 1.31505 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99323 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47339 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46999 * 120.00492 * 16 14 12 19 19 H 1.48508 * 109.47010 * 239.99843 * 16 14 12 20 20 C 1.38659 * 120.00299 * 0.02562 * 7 6 5 21 21 H 1.08001 * 120.00210 * 0.02562 * 4 3 2 22 22 H 1.07999 * 119.88045 * 180.25511 * 5 4 3 23 23 H 1.07998 * 119.88594 * 179.72474 * 6 5 4 24 24 H 0.97004 * 119.99915 * 179.97438 * 8 7 6 25 25 H 1.08999 * 109.46968 * 300.00428 * 9 8 7 26 26 H 1.09004 * 109.47007 * 60.00311 * 9 8 7 27 27 H 1.09002 * 109.46912 * 300.00441 * 10 9 8 28 28 H 1.09000 * 109.46625 * 60.00202 * 10 9 8 29 29 H 1.08999 * 109.47329 * 300.00046 * 11 10 9 30 30 H 1.08996 * 109.46697 * 60.00695 * 11 10 9 31 31 H 0.97004 * 119.99861 * 179.97438 * 15 14 12 32 32 H 1.08006 * 120.11350 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.2050 1.1910 5 6 4.6484 0.2000 1.1890 6 6 5.3422 0.0044 0.0093 7 6 4.6546 -0.1945 -1.1821 8 7 5.3606 -0.3922 -2.3713 9 6 6.8255 -0.3891 -2.3628 10 6 7.3444 -0.6249 -3.7827 11 6 8.8744 -0.6210 -3.7737 12 6 9.3854 -0.8538 -5.1723 13 1 8.6887 -0.9904 -5.9860 14 6 10.7425 -0.8924 -5.4127 15 7 11.5909 -0.7266 -4.4217 16 14 11.3759 -1.1803 -7.1463 17 1 10.2267 -1.3352 -8.0739 18 1 12.2012 -0.0209 -7.5707 19 1 12.2037 -2.4130 -7.1726 20 6 3.2680 -0.1968 -1.1903 21 1 2.7304 0.3625 2.1140 22 1 5.1883 0.3541 2.1116 23 1 6.4222 0.0060 0.0136 24 1 4.8807 -0.5314 -3.2028 25 1 7.1847 0.5740 -2.0003 26 1 7.1867 -1.1817 -1.7073 27 1 6.9852 -1.5879 -4.1456 28 1 6.9833 0.1680 -4.4377 29 1 9.2332 0.3422 -3.4110 30 1 9.2358 -1.4136 -3.1186 31 1 12.5457 -0.7541 -4.5909 32 1 2.7319 -0.3517 -2.1151 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221298.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:48 Heat of formation + Delta-G solvation = 19.792426 kcal Electronic energy + Delta-G solvation = -14192.251999 eV Core-core repulsion = 11730.279492 eV Total energy + Delta-G solvation = -2461.972507 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51126 -37.98039 -36.98093 -35.38338 -33.35179 -32.15137 -30.30773 -27.82964 -25.44399 -24.13822 -22.99194 -21.93962 -19.57917 -18.49492 -17.16228 -17.09379 -16.57473 -16.25534 -16.17890 -15.12407 -15.06675 -14.64692 -14.29534 -14.12675 -14.10226 -13.72879 -13.62493 -13.16627 -12.75057 -12.66446 -12.35549 -12.33330 -12.00876 -11.71267 -11.42870 -11.14637 -10.91084 -10.54117 -9.85690 -8.33274 -8.19296 -6.29367 -0.09031 0.67347 1.41232 1.42447 1.54579 1.60590 2.03488 2.40252 2.52261 2.98032 3.05329 3.14907 4.03547 4.21384 4.28940 4.30657 4.33435 4.54514 4.63442 4.73498 4.96885 5.03263 5.11234 5.20547 5.32083 5.47080 5.53388 5.60231 5.76207 5.83070 5.87139 6.24318 6.40170 6.45016 6.86676 6.90058 7.40045 8.92551 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063631 B = 0.003668 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.933637 B = 7631.488357 C = 8045.671725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.284 3.716 3 C 0.004 3.996 4 C -0.129 4.129 5 C -0.066 4.066 6 C -0.178 4.178 7 C 0.207 3.793 8 N -0.742 5.742 9 C 0.136 3.864 10 C -0.106 4.106 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.060 0.940 14 C 0.000 4.000 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.279 1.279 20 C -0.154 4.154 21 H 0.147 0.853 22 H 0.158 0.842 23 H 0.129 0.871 24 H 0.405 0.595 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H -0.003 1.003 30 H -0.003 1.003 31 H 0.263 0.737 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 1.558 9.443 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.031 4.031 3 C 0.000 4.000 4 C -0.151 4.151 5 C -0.085 4.085 6 C -0.202 4.202 7 C 0.102 3.898 8 N -0.371 5.371 9 C 0.011 3.989 10 C -0.144 4.144 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.180 4.180 21 H 0.165 0.835 22 H 0.175 0.825 23 H 0.147 0.853 24 H 0.241 0.759 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.086 1.566 9.480 17.051 hybrid contribution 0.984 -0.209 -1.258 1.611 sum -13.102 1.356 8.222 15.528 Atomic orbital electron populations 1.81249 1.13324 1.10675 1.09119 1.25954 0.92809 0.92199 0.92120 1.15720 0.82912 1.05970 0.95433 1.21128 0.94449 1.02925 0.96636 1.21107 0.93309 0.95883 0.98193 1.21195 1.00855 1.06278 0.91873 1.17804 0.90648 0.93998 0.87339 1.44822 1.05382 1.79284 1.07567 1.21275 0.79244 1.00712 0.97629 1.21577 0.96569 1.01124 0.95144 1.18927 0.91332 0.95371 0.95549 1.21731 0.92115 1.48793 0.95432 0.92220 1.25926 0.97535 0.95046 1.01235 1.70080 1.02588 1.51234 1.33272 0.85457 0.78439 0.77754 0.79741 1.18666 1.20528 1.20516 1.20567 0.91934 1.07531 0.97922 0.83527 0.82461 0.85282 0.75904 0.92443 0.92434 0.92369 0.92375 0.98464 0.98468 0.92781 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.30 18.54 19.00 0.35 -11.95 16 2 C 0.28 6.16 15.33 88.33 1.35 7.52 16 3 C 0.00 0.07 5.73 -21.38 -0.12 -0.05 16 4 C -0.13 -1.95 9.75 22.56 0.22 -1.73 16 5 C -0.07 -1.00 10.02 22.21 0.22 -0.77 16 6 C -0.18 -3.51 9.31 22.45 0.21 -3.30 16 7 C 0.21 4.43 6.65 38.17 0.25 4.69 16 8 N -0.74 -17.41 5.73 -339.52 -1.95 -19.36 16 9 C 0.14 3.89 4.91 86.38 0.42 4.32 16 10 C -0.11 -3.82 5.27 30.60 0.16 -3.66 16 11 C 0.03 1.26 4.97 29.85 0.15 1.41 16 12 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 14 C 0.00 0.03 5.46 84.66 0.46 0.49 16 15 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 16 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 C -0.15 -2.98 9.60 22.67 0.22 -2.76 16 21 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 22 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 23 H 0.13 2.57 6.71 -2.91 -0.02 2.55 16 24 H 0.41 8.51 8.48 -92.71 -0.79 7.73 16 25 H 0.06 1.66 7.94 -2.39 -0.02 1.65 16 26 H 0.06 1.67 7.94 -2.38 -0.02 1.65 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -62.99 288.39 4.84 -58.15 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.34 Total: 5.94 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.78 Total: -23.18 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -1.31 Total: -85.93 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -62.99 4.84 -58.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221298.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.943 kcal (2) G-P(sol) polarization free energy of solvation -62.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds