Wall clock time and date at job start Mon Mar 30 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48500 * 109.47236 * 270.00767 * 3 2 1 5 5 H 1.48504 * 109.46834 * 30.00701 * 3 2 1 6 6 H 1.48498 * 109.47182 * 150.00210 * 3 2 1 7 7 C 1.37879 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00096 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99879 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47213 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47121 * 179.97438 * 11 10 9 13 13 N 1.30110 * 124.95422 * 304.97979 * 12 11 10 14 14 C 1.35787 * 109.64483 * 180.02562 * 13 12 11 15 15 C 1.39735 * 133.60090 * 179.97438 * 14 13 12 16 16 C 1.36603 * 119.88474 * 179.72469 * 15 14 13 17 17 C 1.38783 * 120.66827 * 0.28758 * 16 15 14 18 18 C 1.37847 * 120.45027 * 359.96769 * 17 16 15 19 19 C 1.38834 * 119.69200 * 0.03175 * 18 17 16 20 20 N 1.36051 * 124.94724 * 125.59800 * 12 11 10 21 21 H 0.97004 * 126.34652 * 359.39556 * 20 12 11 22 22 H 0.96999 * 120.00432 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.47235 * 59.99569 * 9 7 2 24 24 H 1.08999 * 109.47133 * 300.00039 * 9 7 2 25 25 H 1.08996 * 109.46814 * 60.00038 * 10 9 7 26 26 H 1.08999 * 109.47319 * 300.00190 * 10 9 7 27 27 H 1.09003 * 109.46475 * 60.00111 * 11 10 9 28 28 H 1.08999 * 109.47127 * 300.00368 * 11 10 9 29 29 H 1.08002 * 120.06112 * 0.02562 * 15 14 13 30 30 H 1.07994 * 119.66831 * 180.30197 * 16 15 14 31 31 H 1.08003 * 119.77014 * 180.02562 * 17 16 15 32 32 H 1.08002 * 120.15251 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0539 -4.0573 -0.0015 13 7 5.7267 -4.9632 0.8733 14 6 6.3572 -6.1295 0.5803 15 6 6.3671 -7.3949 1.1730 16 6 7.1190 -8.3963 0.6271 17 6 7.8811 -8.1697 -0.5104 18 6 7.8908 -6.9279 -1.1088 19 6 7.1328 -5.8981 -0.5682 20 7 6.9249 -4.5764 -0.9085 21 1 7.3185 -4.1077 -1.6611 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6803 0.8889 24 1 3.8745 -0.6800 -0.8911 25 1 3.6579 -3.1505 -0.8907 26 1 3.6585 -3.1502 0.8892 27 1 5.9155 -2.1223 0.8873 28 1 5.9142 -2.1230 -0.8927 29 1 5.7775 -7.5823 2.0582 30 1 7.1202 -9.3743 1.0852 31 1 8.4699 -8.9720 -0.9300 32 1 8.4859 -6.7568 -1.9937 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044550793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:35 Heat of formation + Delta-G solvation = 49.735116 kcal Electronic energy + Delta-G solvation = -14691.557675 eV Core-core repulsion = 12230.883581 eV Total energy + Delta-G solvation = -2460.674095 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.06709 -37.46887 -34.71873 -33.09489 -32.29474 -30.04633 -29.72539 -27.52548 -23.93803 -22.38564 -21.96569 -20.72152 -19.98393 -17.84027 -17.15396 -16.67113 -15.43099 -15.24037 -14.40499 -14.22768 -14.18529 -13.91099 -13.18285 -12.65826 -12.31507 -12.18435 -11.78815 -11.61601 -11.54380 -11.02895 -10.83001 -10.64285 -9.96847 -9.88718 -9.70515 -9.67396 -9.18083 -8.52306 -8.38124 -8.07437 -6.02022 -4.00126 0.95153 1.49193 2.85219 2.91923 3.30806 3.38663 3.41519 3.87882 4.23851 4.46190 4.60010 4.93281 5.04267 5.20795 5.31642 5.35462 5.42079 5.56651 5.67310 5.74527 5.96784 6.05236 6.34520 6.45046 6.51159 6.53298 6.61407 6.84285 6.90348 7.30472 7.37815 7.42574 7.80548 8.02190 8.56761 9.04014 9.59875 11.11631 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.060248 B = 0.004477 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.631045 B = 6252.296190 C = 6503.958803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.093 4.093 11 C -0.049 4.049 12 C 0.305 3.695 13 N -0.490 5.490 14 C 0.051 3.949 15 C -0.066 4.066 16 C -0.132 4.132 17 C -0.111 4.111 18 C -0.111 4.111 19 C 0.038 3.962 20 N -0.603 5.603 21 H 0.421 0.579 22 H 0.263 0.737 23 H 0.018 0.982 24 H 0.011 0.989 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.113 -12.289 -2.243 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.088 4.088 12 C 0.039 3.961 13 N -0.210 5.210 14 C -0.067 4.067 15 C -0.085 4.085 16 C -0.152 4.152 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.072 4.072 20 N -0.214 5.214 21 H 0.259 0.741 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.396 -12.103 -1.497 21.245 hybrid contribution 1.076 1.030 -1.174 1.896 sum 18.472 -11.073 -2.671 21.702 Atomic orbital electron populations 1.69916 1.06326 1.26844 1.51222 1.25043 0.94732 0.99156 0.94639 0.86770 0.80406 0.83653 0.78382 1.20396 1.21405 1.18950 1.21136 0.89453 0.94539 1.50638 0.90970 1.19597 0.97362 0.91862 0.96291 1.21431 0.88989 1.00232 1.02479 1.20532 0.99622 0.85037 1.03594 1.24084 0.88846 0.97592 0.85624 1.70501 1.25535 0.98859 1.26109 1.19214 0.98127 0.94278 0.95129 1.20051 0.99062 0.89659 0.99766 1.20605 0.98517 0.98970 0.97154 1.20818 0.99992 0.95877 0.96360 1.19922 1.00804 0.91494 1.01005 1.18923 1.03016 0.85758 0.99466 1.43225 1.40785 1.09467 1.27898 0.74062 0.92759 0.96326 0.97106 0.92749 0.91065 0.88736 0.90331 0.85382 0.85573 0.85567 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.84 5.09 -26.73 -0.14 -1.98 16 11 C -0.05 -0.75 5.84 -27.88 -0.16 -0.91 16 12 C 0.31 4.79 7.37 -154.81 -1.14 3.65 16 13 N -0.49 -8.80 11.21 -8.23 -0.09 -8.89 16 14 C 0.05 0.82 7.23 -84.70 -0.61 0.21 16 15 C -0.07 -0.87 10.05 -39.61 -0.40 -1.27 16 16 C -0.13 -1.38 9.96 -39.97 -0.40 -1.78 16 17 C -0.11 -1.09 10.03 -39.52 -0.40 -1.48 16 18 C -0.11 -1.22 10.07 -39.50 -0.40 -1.61 16 19 C 0.04 0.53 7.30 -83.99 -0.61 -0.08 16 20 N -0.60 -7.73 6.23 -8.00 -0.05 -7.78 16 21 H 0.42 3.85 8.96 -40.82 -0.37 3.48 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.43 7.20 -51.92 -0.37 0.06 16 24 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -33.56 276.58 -8.77 -42.33 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.10 Total: -0.19 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -4.80 Total: -19.15 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.63 Total: -44.06 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.56 -8.77 -42.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044550793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.066 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds