Wall clock time and date at job start Mon Mar 30 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30112 * 124.95288 * 2 1 4 4 C 1.35789 * 109.64303 * 180.02562 * 3 2 1 5 5 C 1.39740 * 133.59921 * 179.97438 * 4 3 2 6 6 C 1.36597 * 119.88637 * 179.97438 * 5 4 3 7 7 C 1.38774 * 120.66915 * 0.02562 * 6 5 4 8 8 C 1.37850 * 120.45483 * 359.97438 * 7 6 5 9 9 C 1.38838 * 119.68656 * 0.02562 * 8 7 6 10 10 N 1.36038 * 124.94978 * 180.02562 * 2 1 3 11 11 C 1.46502 * 126.34850 * 0.02562 * 10 2 1 12 12 H 1.08999 * 109.47293 * 4.49145 * 11 10 2 13 13 C 1.52993 * 109.47234 * 244.48694 * 11 10 2 14 14 C 1.50702 * 109.47175 * 124.48522 * 11 10 2 15 15 H 1.08003 * 119.99967 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99917 * 180.02562 * 14 11 10 17 17 N 1.31507 * 120.00297 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99758 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47161 * 90.00110 * 18 16 14 20 20 H 1.48501 * 109.46618 * 209.99896 * 18 16 14 21 21 H 1.48503 * 109.47089 * 329.99826 * 18 16 14 22 22 H 1.09003 * 109.46747 * 264.68811 * 1 2 3 23 23 H 1.08998 * 109.46766 * 24.68611 * 1 2 3 24 24 H 1.08996 * 109.47098 * 144.69245 * 1 2 3 25 25 H 1.08001 * 120.05401 * 359.97438 * 5 4 3 26 26 H 1.08004 * 119.66412 * 179.72611 * 6 5 4 27 27 H 1.08005 * 119.77287 * 179.97438 * 7 6 5 28 28 H 1.07996 * 120.16119 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.47150 * 173.91083 * 13 11 10 30 30 H 1.08995 * 109.47410 * 293.90754 * 13 11 10 31 31 H 1.09003 * 109.47017 * 53.90964 * 13 11 10 32 32 H 0.96996 * 120.00408 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0664 0.0000 4 6 3.5621 0.7079 -0.0006 5 6 4.7588 1.4295 -0.0013 6 6 5.9532 0.7668 -0.0012 7 6 5.9931 -0.6204 -0.0010 8 6 4.8254 -1.3529 -0.0003 9 6 3.6019 -0.6966 -0.0004 10 7 2.2863 -1.1150 -0.0005 11 6 1.8166 -2.5027 -0.0016 12 1 0.7297 -2.5183 -0.0825 13 6 2.2411 -3.1859 1.2998 14 6 2.4179 -3.2357 -1.1731 15 1 3.0838 -2.7195 -1.8489 16 6 2.1180 -4.5651 -1.3821 17 7 1.3069 -5.1935 -0.5595 18 14 2.8640 -5.4738 -2.8338 19 1 4.1538 -6.0857 -2.4249 20 1 1.9315 -6.5385 -3.2834 21 1 3.0996 -4.5196 -3.9470 22 1 -0.3633 -0.0951 1.0233 23 1 -0.3633 0.9337 -0.4292 24 1 -0.3633 -0.8386 -0.5939 25 1 4.7393 2.5093 -0.0019 26 1 6.8760 1.3281 -0.0062 27 1 6.9456 -1.1295 -0.0014 28 1 4.8619 -2.4323 0.0003 29 1 1.8009 -4.1820 1.3476 30 1 3.3276 -3.2671 1.3300 31 1 1.8971 -2.5955 2.1490 32 1 1.0956 -6.1286 -0.7067 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246947.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:40 Heat of formation + Delta-G solvation = 44.427144 kcal Electronic energy + Delta-G solvation = -15900.645387 eV Core-core repulsion = 13439.741121 eV Total energy + Delta-G solvation = -2460.904265 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.94829 -38.27374 -36.73578 -34.13281 -32.20731 -31.56193 -30.14792 -28.32073 -27.44714 -24.11573 -22.91768 -22.47943 -20.70394 -18.79038 -18.02490 -17.55200 -16.40844 -16.33220 -16.10892 -15.13288 -14.94379 -14.42130 -13.99371 -13.91117 -13.80104 -13.55023 -13.18153 -13.13479 -12.88343 -12.68333 -12.47906 -12.36290 -12.16011 -11.94320 -11.52071 -10.97844 -10.79124 -10.64939 -9.05698 -8.86827 -8.30254 -6.45976 0.15226 0.77757 1.35875 1.38428 1.47557 1.92990 2.06998 2.35187 2.99054 3.06159 3.35612 3.75977 4.22259 4.26110 4.34844 4.50399 4.60281 4.63797 4.67309 4.72715 4.75246 4.87876 4.97266 5.02636 5.21125 5.39638 5.51395 5.65871 5.69214 5.76461 5.78769 6.03649 6.13651 6.40156 6.66856 7.07065 7.25219 8.74145 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.010122 C = 0.008159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.548379 B = 2765.689401 C = 3430.963775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.256 3.744 3 N -0.535 5.535 4 C 0.005 3.995 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.115 4.115 8 C -0.115 4.115 9 C 0.034 3.966 10 N -0.468 5.468 11 C 0.262 3.738 12 H 0.052 0.948 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.046 0.954 16 C 0.034 3.966 17 N -0.904 5.904 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.278 1.278 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.164 0.836 27 H 0.155 0.845 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 6.365 1.578 7.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.009 4.009 3 N -0.257 5.257 4 C -0.114 4.114 5 C -0.106 4.106 6 C -0.143 4.143 7 C -0.134 4.134 8 C -0.135 4.135 9 C -0.077 4.077 10 N -0.154 5.154 11 C 0.162 3.838 12 H 0.070 0.930 13 C -0.191 4.191 14 C -0.584 4.584 15 H 0.064 0.936 16 C -0.168 4.168 17 N -0.541 5.541 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.203 1.203 22 H 0.117 0.883 23 H 0.126 0.874 24 H 0.098 0.902 25 H 0.157 0.843 26 H 0.182 0.818 27 H 0.172 0.828 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.641 6.833 1.618 7.910 hybrid contribution 0.322 -1.668 -0.701 1.837 sum 3.963 5.165 0.917 6.574 Atomic orbital electron populations 1.20440 0.82475 1.05109 1.04743 1.24308 0.97352 0.81084 0.98197 1.70308 1.01245 1.28121 1.26041 1.19656 0.93033 0.91069 1.07655 1.20218 0.88994 1.00076 1.01324 1.20944 0.97889 0.94063 1.01394 1.21223 0.97175 0.94528 1.00503 1.20348 0.90001 0.99752 1.03421 1.19250 0.86742 0.95034 1.06643 1.46146 1.04562 1.08813 1.55916 1.19093 0.95698 0.73601 0.95397 0.93019 1.21928 0.99937 1.02146 0.95097 1.21261 1.30092 0.96176 1.10849 0.93597 1.25487 0.94941 0.97511 0.98826 1.69921 1.34922 1.11703 1.37591 0.85538 0.78655 0.78152 0.79266 1.19641 1.20003 1.20296 0.88314 0.87428 0.90212 0.84293 0.81811 0.82759 0.87067 0.89788 0.94845 0.95402 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.19 9.93 71.24 0.71 -1.48 16 2 C 0.26 10.76 7.85 137.92 1.08 11.85 16 3 N -0.53 -23.23 11.27 -179.96 -2.03 -25.26 16 4 C 0.01 0.22 7.23 39.45 0.29 0.51 16 5 C -0.09 -2.94 10.05 22.25 0.22 -2.71 16 6 C -0.12 -3.48 9.96 22.01 0.22 -3.27 16 7 C -0.11 -3.59 10.03 22.31 0.22 -3.37 16 8 C -0.11 -4.65 9.26 22.32 0.21 -4.44 16 9 C 0.03 1.55 6.14 38.86 0.24 1.79 16 10 N -0.47 -21.63 2.65 -487.17 -1.29 -22.92 16 11 C 0.26 12.75 2.90 44.24 0.13 12.88 16 12 H 0.05 2.58 6.71 -2.39 -0.02 2.56 16 13 C -0.13 -6.18 8.97 71.98 0.65 -5.53 16 14 C -0.55 -28.77 7.91 25.60 0.20 -28.56 16 15 H 0.05 2.56 7.56 -2.91 -0.02 2.54 16 16 C 0.03 1.76 5.30 84.66 0.45 2.21 16 17 N -0.90 -47.29 11.39 21.45 0.24 -47.04 16 18 Si 0.96 41.54 29.54 68.60 2.03 43.56 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 23 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 24 H 0.08 2.55 7.21 -2.39 -0.02 2.53 16 25 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 26 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.11 4.77 7.13 -2.91 -0.02 4.75 16 29 H 0.08 4.14 6.26 -2.38 -0.01 4.12 16 30 H 0.03 1.55 7.07 -2.39 -0.02 1.53 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -61.38 270.54 4.68 -56.70 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.11 Total: 15.09 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.61 Total: -20.13 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -3.07 Total: -95.22 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -61.38 4.68 -56.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246947.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.123 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds